PDB Chemical Component DTY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DTY
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N |
CA |
1.468 |
1.442 |
N |
H |
1.021 |
1.005 |
N |
H2 |
1.020 |
1.006 |
CA |
C |
1.531 |
1.522 |
CA |
CB |
1.511 |
1.534 |
CA |
HA |
1.116 |
1.096 |
C |
O |
1.225 |
1.227 |
C |
OXT |
|
1.354 |
CB |
CG |
1.524 |
1.510 |
CB |
HB2 |
1.115 |
1.097 |
CB |
HB3 |
1.115 |
1.098 |
CG |
CD1 |
1.393 |
1.385 |
CG |
CD2 |
1.390 |
1.385 |
CD1 |
CE1 |
1.379 |
1.395 |
CD1 |
HD1 |
1.104 |
1.087 |
CD2 |
CE2 |
1.392 |
1.396 |
CD2 |
HD2 |
1.102 |
1.087 |
CE1 |
CZ |
1.387 |
1.395 |
CE1 |
HE1 |
1.103 |
1.087 |
CE2 |
CZ |
1.372 |
1.394 |
CE2 |
HE2 |
1.102 |
1.086 |
CZ |
OH |
1.375 |
1.361 |
OH |
HH |
0.949 |
0.971 |
OXT |
HXT |
|
0.981 |
Bond Angles for DTY
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
CA |
N |
H |
106.2 |
119.0 |
CA |
N |
H2 |
113.5 |
119.0 |
N |
CA |
C |
106.2 |
111.0 |
N |
CA |
CB |
112.5 |
111.4 |
N |
CA |
HA |
109.8 |
106.1 |
H |
N |
H2 |
113.3 |
120.6 |
C |
CA |
CB |
110.2 |
110.0 |
C |
CA |
HA |
112.3 |
106.9 |
CA |
C |
O |
123.6 |
123.0 |
CA |
C |
OXT |
|
114.8 |
CB |
CA |
HA |
105.9 |
111.4 |
CA |
CB |
CG |
110.0 |
112.9 |
CA |
CB |
HB2 |
112.0 |
110.4 |
CA |
CB |
HB3 |
112.0 |
110.1 |
O |
C |
OXT |
|
122.2 |
C |
OXT |
HXT |
|
114.9 |
CG |
CB |
HB2 |
112.0 |
108.0 |
CG |
CB |
HB3 |
112.0 |
109.7 |
CB |
CG |
CD1 |
119.2 |
119.3 |
CB |
CG |
CD2 |
121.0 |
119.3 |
HB2 |
CB |
HB3 |
98.4 |
105.3 |
CD1 |
CG |
CD2 |
119.7 |
121.3 |
CG |
CD1 |
CE1 |
122.1 |
119.3 |
CG |
CD1 |
HD1 |
119.5 |
121.2 |
CG |
CD2 |
CE2 |
117.6 |
119.3 |
CG |
CD2 |
HD2 |
121.1 |
121.2 |
CE1 |
CD1 |
HD1 |
118.4 |
119.5 |
CD1 |
CE1 |
CZ |
118.0 |
120.0 |
CD1 |
CE1 |
HE1 |
120.7 |
119.6 |
CE2 |
CD2 |
HD2 |
121.3 |
119.5 |
CD2 |
CE2 |
CZ |
122.3 |
120.0 |
CD2 |
CE2 |
HE2 |
119.6 |
119.6 |
CZ |
CE1 |
HE1 |
121.3 |
120.4 |
CE1 |
CZ |
CE2 |
120.2 |
120.0 |
CE1 |
CZ |
OH |
117.5 |
120.0 |
CZ |
CE2 |
HE2 |
118.1 |
120.4 |
CE2 |
CZ |
OH |
122.3 |
120.0 |
CZ |
OH |
HH |
117.5 |
110.2 |
Torsion Angles for DTY
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
H |
N |
CA |
H2 |
125.2 |
166.5 |
C |
CA |
N |
CB |
239.4 |
237.1 |
C |
CA |
N |
HA |
121.6 |
115.8 |
N |
CA |
C |
O |
93.1 |
34.8 |
N |
CA |
C |
OXT |
|
214.3 |
CB |
CA |
N |
HA |
242.3 |
238.7 |
N |
CA |
CB |
CG |
167.6 |
158.2 |
N |
CA |
CB |
HB2 |
292.9 |
279.3 |
N |
CA |
CB |
HB3 |
42.4 |
35.1 |
CA |
N |
H |
H2 |
234.7 |
193.7 |
H |
N |
CA |
C |
180.0 |
201.8 |
H |
N |
CA |
CB |
300.6 |
324.7 |
H |
N |
CA |
HA |
58.3 |
86.1 |
CA |
N |
H2 |
H |
121.3 |
166.3 |
H2 |
N |
CA |
C |
54.8 |
35.3 |
H2 |
N |
CA |
CB |
175.4 |
158.2 |
H2 |
N |
CA |
HA |
293.1 |
279.6 |
C |
CA |
N |
H |
180.0 |
201.8 |
C |
CA |
N |
H2 |
54.8 |
35.3 |
N |
CA |
C |
CB |
122.1 |
123.7 |
N |
CA |
C |
HA |
239.9 |
244.8 |
CB |
CA |
C |
HA |
117.8 |
121.1 |
C |
CA |
CB |
CG |
285.9 |
281.7 |
C |
CA |
CB |
HB2 |
51.2 |
42.8 |
C |
CA |
CB |
HB3 |
160.7 |
158.6 |
O |
C |
CA |
OXT |
|
180.5 |
CA |
C |
OXT |
HXT |
|
180.4 |
CB |
CA |
N |
H |
300.6 |
324.7 |
CB |
CA |
N |
H2 |
175.4 |
158.2 |
N |
CA |
CB |
C |
241.6 |
236.5 |
N |
CA |
CB |
HA |
120.0 |
118.2 |
C |
CA |
CB |
HA |
238.4 |
241.6 |
CB |
CA |
C |
O |
330.9 |
271.1 |
CB |
CA |
C |
OXT |
|
90.7 |
CG |
CB |
CA |
HB2 |
234.7 |
238.9 |
CG |
CB |
CA |
HB3 |
125.2 |
123.1 |
CA |
CB |
CG |
CD1 |
287.9 |
270.0 |
CA |
CB |
CG |
CD2 |
107.4 |
90.0 |
HB2 |
CB |
CA |
HB3 |
250.5 |
244.2 |
HA |
CA |
N |
H |
58.3 |
86.1 |
HA |
CA |
N |
H2 |
293.1 |
279.6 |
N |
CA |
HA |
C |
118.0 |
118.5 |
N |
CA |
HA |
CB |
238.2 |
238.7 |
C |
CA |
HA |
CB |
120.3 |
120.2 |
HA |
CA |
C |
O |
213.2 |
150.0 |
HA |
CA |
C |
OXT |
|
329.6 |
HA |
CA |
CB |
CG |
47.6 |
40.0 |
HA |
CA |
CB |
HB2 |
172.9 |
161.1 |
HA |
CA |
CB |
HB3 |
282.3 |
277.0 |
O |
C |
CA |
CB |
330.9 |
271.1 |
O |
C |
CA |
HA |
213.2 |
150.0 |
CA |
C |
O |
OXT |
|
179.5 |
O |
C |
OXT |
HXT |
|
359.9 |
OXT |
C |
CA |
CB |
|
90.7 |
OXT |
C |
CA |
HA |
|
329.6 |
CA |
C |
OXT |
O |
|
180.5 |
CG |
CB |
CA |
HA |
47.6 |
40.0 |
CA |
CB |
CG |
HB2 |
125.2 |
122.4 |
CA |
CB |
CG |
HB3 |
234.8 |
236.7 |
HB2 |
CB |
CG |
HB3 |
109.5 |
114.3 |
CD1 |
CG |
CB |
CD2 |
180.5 |
180.0 |
CB |
CG |
CD1 |
CE1 |
180.2 |
180.0 |
CB |
CG |
CD1 |
HD1 |
0.2 |
0.1 |
CB |
CG |
CD2 |
CE2 |
180.2 |
179.9 |
CB |
CG |
CD2 |
HD2 |
0.2 |
360.0 |
HB2 |
CB |
CA |
HA |
172.9 |
161.1 |
CA |
CB |
HB2 |
CG |
235.8 |
236.0 |
CA |
CB |
HB2 |
HB3 |
117.9 |
118.8 |
CG |
CB |
HB2 |
HB3 |
242.0 |
242.8 |
HB2 |
CB |
CG |
CD1 |
162.7 |
147.5 |
HB2 |
CB |
CG |
CD2 |
342.2 |
327.6 |
HB3 |
CB |
CA |
HA |
282.3 |
277.0 |
CA |
CB |
HB3 |
CG |
124.2 |
124.9 |
CA |
CB |
HB3 |
HB2 |
242.1 |
241.0 |
CG |
CB |
HB3 |
HB2 |
118.0 |
116.0 |
HB3 |
CB |
CG |
CD1 |
53.1 |
33.2 |
HB3 |
CB |
CG |
CD2 |
232.6 |
213.3 |
CD1 |
CG |
CB |
HB2 |
162.7 |
147.5 |
CD1 |
CG |
CB |
HB3 |
53.1 |
33.2 |
CB |
CG |
CD1 |
CD2 |
179.5 |
180.0 |
CD1 |
CG |
CD2 |
CE2 |
359.7 |
360.0 |
CD1 |
CG |
CD2 |
HD2 |
179.7 |
180.0 |
CE1 |
CD1 |
CG |
HD1 |
180.0 |
180.0 |
CG |
CD1 |
CE1 |
CZ |
359.6 |
0.0 |
CG |
CD1 |
CE1 |
HE1 |
179.7 |
180.0 |
CD2 |
CG |
CB |
HB2 |
342.2 |
327.6 |
CD2 |
CG |
CB |
HB3 |
232.6 |
213.3 |
CB |
CG |
CD2 |
CD1 |
180.5 |
180.0 |
CD2 |
CG |
CD1 |
CE1 |
0.7 |
0.0 |
CD2 |
CG |
CD1 |
HD1 |
180.7 |
180.0 |
CE2 |
CD2 |
CG |
HD2 |
180.0 |
179.9 |
CG |
CD2 |
CE2 |
CZ |
359.7 |
0.1 |
CG |
CD2 |
CE2 |
HE2 |
179.7 |
180.0 |
CE1 |
CD1 |
CG |
CD2 |
0.7 |
0.0 |
CG |
CD1 |
CE1 |
HD1 |
180.0 |
180.0 |
CZ |
CE1 |
CD1 |
HE1 |
180.0 |
180.0 |
CD1 |
CE1 |
CZ |
CE2 |
359.8 |
0.0 |
CD1 |
CE1 |
CZ |
OH |
180.3 |
179.9 |
HD1 |
CD1 |
CG |
CD2 |
180.7 |
180.0 |
CG |
CD1 |
HD1 |
CE1 |
180.0 |
180.0 |
HD1 |
CD1 |
CE1 |
CZ |
179.6 |
180.0 |
HD1 |
CD1 |
CE1 |
HE1 |
359.7 |
359.9 |
CG |
CD2 |
CE2 |
HD2 |
180.0 |
180.1 |
CE1 |
CZ |
CE2 |
CD2 |
0.6 |
359.9 |
CZ |
CE2 |
CD2 |
HE2 |
180.0 |
180.0 |
CD2 |
CE2 |
CZ |
OH |
180.0 |
180.1 |
CG |
CD2 |
HD2 |
CE2 |
180.0 |
179.9 |
HD2 |
CD2 |
CE2 |
CZ |
179.7 |
180.0 |
HD2 |
CD2 |
CE2 |
HE2 |
359.7 |
360.0 |
CZ |
CE1 |
CD1 |
HD1 |
179.6 |
180.0 |
CD1 |
CE1 |
CZ |
HE1 |
180.0 |
180.0 |
CD2 |
CE2 |
CZ |
CE1 |
0.6 |
359.9 |
CE1 |
CZ |
CE2 |
HE2 |
180.6 |
180.0 |
CE2 |
CZ |
CE1 |
OH |
179.5 |
180.1 |
CE1 |
CZ |
OH |
HH |
180.0 |
71.3 |
HE1 |
CE1 |
CD1 |
HD1 |
359.7 |
359.9 |
CD1 |
CE1 |
HE1 |
CZ |
180.0 |
180.0 |
HE1 |
CE1 |
CZ |
CE2 |
179.7 |
180.1 |
HE1 |
CE1 |
CZ |
OH |
0.3 |
359.9 |
CZ |
CE2 |
CD2 |
HD2 |
179.7 |
180.0 |
CD2 |
CE2 |
CZ |
HE2 |
180.0 |
180.0 |
CE2 |
CZ |
CE1 |
HE1 |
179.7 |
180.1 |
CE1 |
CZ |
CE2 |
OH |
180.6 |
179.9 |
CE2 |
CZ |
OH |
HH |
0.5 |
251.2 |
HE2 |
CE2 |
CD2 |
HD2 |
359.7 |
360.0 |
CD2 |
CE2 |
HE2 |
CZ |
180.0 |
180.0 |
HE2 |
CE2 |
CZ |
OH |
0.1 |
0.1 |
OH |
CZ |
CE1 |
HE1 |
0.3 |
359.9 |
CE1 |
CZ |
OH |
CE2 |
179.4 |
180.1 |
OH |
CZ |
CE2 |
HE2 |
0.1 |
0.1 |