PDB Chemical Component DTR

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DTR

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CA 1.451 1.441
N H 1.001 1.006
N H2 1.000 1.006
CA CB 1.543 1.547
CA C 1.544 1.522
CA HA 1.100 1.096
CB CG 1.518 1.476
CB HB2 1.100 1.110
CB HB3 1.100 1.110
CG CD1 1.341 1.376
CG CD2 1.436 1.424
CD1 NE1 1.380 1.369
CD1 HD1 1.080 1.081
NE1 CE2 1.368 1.377
NE1 HE1 1.000 1.011
CE2 CZ2 1.401 1.399
CE2 CD2 1.402 1.396
CZ2 CH2 1.381 1.397
CZ2 HZ2 1.080 1.086
CH2 CZ3 1.377 1.394
CH2 HH2 1.080 1.087
CZ3 CE3 1.405 1.399
CZ3 HZ3 1.080 1.086
CE3 CD2 1.400 1.409
CE3 HE3 1.080 1.086
C O 1.232 1.227
C OXT   1.354
OXT HXT   0.980

Bond Angles for DTR

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA N H 109.5 119.0
CA N H2 109.5 119.0
N CA CB 111.3 110.9
N CA C 109.4 111.0
N CA HA 108.5 106.0
H N H2 109.5 120.6
CB CA C 109.9 111.1
CB CA HA 107.9 110.7
CA CB CG 112.9 114.1
CA CB HB2 107.5 108.8
CA CB HB3 108.4 108.6
C CA HA 109.9 106.9
CA C O 120.5 122.9
CA C OXT   114.9
CG CB HB2 107.6 109.7
CG CB HB3 108.3 111.4
CB CG CD1 126.7 125.8
CB CG CD2 126.7 126.5
HB2 CB HB3 112.2 103.7
CD1 CG CD2 106.6 107.7
CG CD1 NE1 110.5 108.0
CG CD1 HD1 124.7 131.6
CG CD2 CE2 107.0 107.1
CG CD2 CE3 133.8 134.1
NE1 CD1 HD1 124.8 120.4
CD1 NE1 CE2 108.3 110.2
CD1 NE1 HE1 125.8 125.0
CE2 NE1 HE1 125.8 124.8
NE1 CE2 CZ2 129.8 130.3
NE1 CE2 CD2 107.6 107.1
CZ2 CE2 CD2 122.6 122.6
CE2 CZ2 CH2 116.8 117.6
CE2 CZ2 HZ2 121.6 121.4
CE2 CD2 CE3 119.2 118.8
CH2 CZ2 HZ2 121.6 121.0
CZ2 CH2 CZ3 122.1 121.0
CZ2 CH2 HH2 119.0 119.4
CZ3 CH2 HH2 119.0 119.5
CH2 CZ3 CE3 121.3 120.8
CH2 CZ3 HZ3 119.4 119.7
CE3 CZ3 HZ3 119.3 119.5
CZ3 CE3 CD2 118.0 119.2
CZ3 CE3 HE3 121.0 120.0
CD2 CE3 HE3 121.0 120.9
O C OXT   122.2
C OXT HXT   114.8

Torsion Angles for DTR

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H N CA H2 120.0 166.6
CB CA N C 121.6 124.0
CB CA N HA 241.5 239.8
N CA CB CG 297.6 157.5
N CA CB HB2 179.1 280.3
N CA CB HB3 57.6 32.6
C CA N HA 119.8 115.8
N CA C O 215.1 34.7
N CA C OXT   214.4
CA N H H2 240.0 193.7
H N CA CB 89.5 71.0
H N CA C 327.9 307.0
H N CA HA 208.1 191.2
CA N H2 H 120.0 166.4
H2 N CA CB 329.5 264.5
H2 N CA C 207.9 140.4
H2 N CA HA 88.1 24.7
CB CA N H 89.5 71.0
CB CA N H2 329.5 264.5
N CA CB C 238.7 236.0
N CA CB HA 118.9 117.4
C CA CB HA 240.2 241.4
CB CA C O 92.7 270.8
CB CA C OXT   90.4
CG CB CA HB2 118.5 237.1
CG CB CA HB3 240.0 124.9
CA CB CG CD1 87.6 90.0
CA CB CG CD2 270.9 270.0
HB2 CB CA HB3 121.5 247.7
C CA N H 327.9 307.0
C CA N H2 207.9 140.4
N CA C CB 122.5 123.9
N CA C HA 241.1 244.8
CB CA C HA 118.6 120.8
C CA CB CG 59.0 281.5
C CA CB HB2 300.4 44.3
C CA CB HB3 178.9 156.6
O C CA OXT   180.3
CA C OXT HXT   180.4
HA CA N H 208.1 191.2
HA CA N H2 88.1 24.7
N CA HA CB 239.3 239.6
N CA HA C 119.5 118.5
CB CA HA C 240.2 238.9
HA CA CB CG 178.8 40.0
HA CA CB HB2 60.2 162.9
HA CA CB HB3 298.7 275.2
HA CA C O 334.1 150.0
HA CA C OXT   329.6
CG CB CA C 59.0 281.5
CG CB CA HA 178.8 40.0
CA CB CG HB2 241.5 122.4
CA CB CG HB3 120.0 236.6
HB2 CB CG HB3 238.5 114.2
CD1 CG CB CD2 176.7 180.0
CB CG CD1 NE1 183.1 180.0
CB CG CD1 HD1 3.1 360.0
CB CG CD2 CE2 176.9 180.0
CB CG CD2 CE3 356.7 360.0
HB2 CB CA C 300.4 44.3
HB2 CB CA HA 60.2 162.9
CA CB HB2 CG 121.9 234.5
CA CB HB2 HB3 240.9 115.4
CG CB HB2 HB3 119.0 240.9
HB2 CB CG CD1 206.1 327.6
HB2 CB CG CD2 29.4 147.5
HB3 CB CA C 178.9 156.6
HB3 CB CA HA 298.7 275.2
CA CB HB3 CG 237.2 126.5
CA CB HB3 HB2 118.6 244.4
CG CB HB3 HB2 241.4 117.9
HB3 CB CG CD1 327.6 213.3
HB3 CB CG CD2 150.9 33.3
CD1 CG CB HB2 206.1 327.6
CD1 CG CB HB3 327.6 213.3
CB CG CD1 CD2 182.7 180.0
CD1 CG CD2 CE2 359.7 360.0
CD1 CG CD2 CE3 179.4 180.0
NE1 CD1 CG HD1 180.0 180.0
CG CD1 NE1 CE2 359.7 0.0
CG CD1 NE1 HE1 179.7 180.0
CD2 CG CB HB2 29.4 147.5
CD2 CG CB HB3 150.9 33.3
CB CG CD2 CD1 177.3 180.0
CD2 CG CD1 NE1 0.4 360.0
CD2 CG CD1 HD1 180.4 180.0
NE1 CE2 CD2 CG 0.2 0.1
CZ2 CE2 CD2 CG 180.4 179.9
CE2 CD2 CG CE3 180.2 180.0
CZ3 CE3 CD2 CG 180.0 180.0
CG CD2 CE3 HE3 0.0 0.0
NE1 CD1 CG CD2 0.4 360.0
CG CD1 NE1 HD1 180.0 180.0
CE2 NE1 CD1 HE1 180.0 180.1
CD1 NE1 CE2 CZ2 179.8 180.1
CD1 NE1 CE2 CD2 0.0 359.9
HD1 CD1 CG CD2 180.4 180.0
CG CD1 HD1 NE1 180.0 180.0
HD1 CD1 NE1 CE2 179.7 180.0
HD1 CD1 NE1 HE1 359.7 360.0
CG CD2 CE2 NE1 0.2 0.1
CE2 NE1 CD1 HD1 179.7 180.0
CD1 NE1 CE2 HE1 180.0 179.9
CZ2 CE2 NE1 CD2 179.8 180.1
NE1 CE2 CZ2 CH2 179.8 179.9
NE1 CE2 CZ2 HZ2 359.8 360.0
NE1 CE2 CD2 CE3 180.4 180.0
HE1 NE1 CD1 HD1 359.7 360.0
CD1 NE1 HE1 CE2 180.0 180.1
HE1 NE1 CE2 CZ2 359.8 0.1
HE1 NE1 CE2 CD2 180.0 180.0
CG CD2 CE2 CZ2 180.4 179.9
CZ2 CE2 NE1 HE1 359.8 0.1
NE1 CE2 CZ2 CD2 180.2 179.9
CZ2 CE2 CD2 CE3 0.6 359.9
CH2 CZ2 CE2 HZ2 180.0 180.0
CE2 CZ2 CH2 CZ3 359.9 359.9
CE2 CZ2 CH2 HH2 179.9 180.0
CG CD2 CE2 CE3 179.8 180.0
CD2 CE2 NE1 HE1 180.0 180.0
NE1 CE2 CD2 CZ2 179.8 180.1
CD2 CE2 CZ2 CH2 359.6 0.1
CD2 CE2 CZ2 HZ2 179.6 180.1
CZ3 CE3 CD2 CE2 359.8 0.1
CE2 CD2 CE3 HE3 179.8 180.0
CH2 CZ2 CE2 CD2 359.6 0.1
CE2 CZ2 CH2 HZ2 180.0 180.0
CZ3 CH2 CZ2 HH2 180.0 179.9
CZ2 CH2 CZ3 CE3 0.4 0.1
CZ2 CH2 CZ3 HZ3 180.4 180.0
HZ2 CZ2 CE2 CD2 179.6 180.1
CE2 CZ2 HZ2 CH2 180.0 180.0
HZ2 CZ2 CH2 CZ3 180.0 179.9
HZ2 CZ2 CH2 HH2 359.9 360.0
CZ3 CH2 CZ2 HZ2 180.0 179.9
CZ2 CH2 CZ3 HH2 180.0 180.1
CE3 CZ3 CH2 HZ3 180.0 180.0
CH2 CZ3 CE3 CD2 359.8 359.9
CH2 CZ3 CE3 HE3 179.8 180.0
HH2 CH2 CZ2 HZ2 359.9 360.0
CZ2 CH2 HH2 CZ3 180.0 179.9
HH2 CH2 CZ3 CE3 180.4 180.0
HH2 CH2 CZ3 HZ3 0.4 360.0
CG CD2 CE3 CZ3 180.0 180.0
CE2 CD2 CE3 CZ3 359.8 0.1
CE3 CZ3 CH2 HH2 180.4 180.0
CH2 CZ3 CE3 HZ3 180.0 180.0
CD2 CE3 CZ3 HE3 180.0 180.0
HZ3 CZ3 CH2 HH2 0.4 360.0
CH2 CZ3 HZ3 CE3 180.0 180.0
HZ3 CZ3 CE3 CD2 179.8 180.0
HZ3 CZ3 CE3 HE3 359.7 0.0
CG CD2 CE3 CE2 180.2 180.0
CD2 CE3 CZ3 HZ3 179.8 180.0
CZ3 CE3 CD2 HE3 180.0 180.0
HE3 CE3 CZ3 HZ3 359.7 0.0
CZ3 CE3 HE3 CD2 180.0 180.0
O C CA HA 334.1 150.0
CA C O OXT   179.7
O C OXT HXT   0.1
OXT C CA HA   329.6
CA C OXT O   180.3