PDB Chemical Component DTR
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DTR
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N |
CA |
1.451 |
1.441 |
N |
H |
1.001 |
1.006 |
N |
H2 |
1.000 |
1.006 |
CA |
CB |
1.543 |
1.547 |
CA |
C |
1.544 |
1.522 |
CA |
HA |
1.100 |
1.096 |
CB |
CG |
1.518 |
1.476 |
CB |
HB2 |
1.100 |
1.110 |
CB |
HB3 |
1.100 |
1.110 |
CG |
CD1 |
1.341 |
1.376 |
CG |
CD2 |
1.436 |
1.424 |
CD1 |
NE1 |
1.380 |
1.369 |
CD1 |
HD1 |
1.080 |
1.081 |
NE1 |
CE2 |
1.368 |
1.377 |
NE1 |
HE1 |
1.000 |
1.011 |
CE2 |
CZ2 |
1.401 |
1.399 |
CE2 |
CD2 |
1.402 |
1.396 |
CZ2 |
CH2 |
1.381 |
1.397 |
CZ2 |
HZ2 |
1.080 |
1.086 |
CH2 |
CZ3 |
1.377 |
1.394 |
CH2 |
HH2 |
1.080 |
1.087 |
CZ3 |
CE3 |
1.405 |
1.399 |
CZ3 |
HZ3 |
1.080 |
1.086 |
CE3 |
CD2 |
1.400 |
1.409 |
CE3 |
HE3 |
1.080 |
1.086 |
C |
O |
1.232 |
1.227 |
C |
OXT |
|
1.354 |
OXT |
HXT |
|
0.980 |
Bond Angles for DTR
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
CA |
N |
H |
109.5 |
119.0 |
CA |
N |
H2 |
109.5 |
119.0 |
N |
CA |
CB |
111.3 |
110.9 |
N |
CA |
C |
109.4 |
111.0 |
N |
CA |
HA |
108.5 |
106.0 |
H |
N |
H2 |
109.5 |
120.6 |
CB |
CA |
C |
109.9 |
111.1 |
CB |
CA |
HA |
107.9 |
110.7 |
CA |
CB |
CG |
112.9 |
114.1 |
CA |
CB |
HB2 |
107.5 |
108.8 |
CA |
CB |
HB3 |
108.4 |
108.6 |
C |
CA |
HA |
109.9 |
106.9 |
CA |
C |
O |
120.5 |
122.9 |
CA |
C |
OXT |
|
114.9 |
CG |
CB |
HB2 |
107.6 |
109.7 |
CG |
CB |
HB3 |
108.3 |
111.4 |
CB |
CG |
CD1 |
126.7 |
125.8 |
CB |
CG |
CD2 |
126.7 |
126.5 |
HB2 |
CB |
HB3 |
112.2 |
103.7 |
CD1 |
CG |
CD2 |
106.6 |
107.7 |
CG |
CD1 |
NE1 |
110.5 |
108.0 |
CG |
CD1 |
HD1 |
124.7 |
131.6 |
CG |
CD2 |
CE2 |
107.0 |
107.1 |
CG |
CD2 |
CE3 |
133.8 |
134.1 |
NE1 |
CD1 |
HD1 |
124.8 |
120.4 |
CD1 |
NE1 |
CE2 |
108.3 |
110.2 |
CD1 |
NE1 |
HE1 |
125.8 |
125.0 |
CE2 |
NE1 |
HE1 |
125.8 |
124.8 |
NE1 |
CE2 |
CZ2 |
129.8 |
130.3 |
NE1 |
CE2 |
CD2 |
107.6 |
107.1 |
CZ2 |
CE2 |
CD2 |
122.6 |
122.6 |
CE2 |
CZ2 |
CH2 |
116.8 |
117.6 |
CE2 |
CZ2 |
HZ2 |
121.6 |
121.4 |
CE2 |
CD2 |
CE3 |
119.2 |
118.8 |
CH2 |
CZ2 |
HZ2 |
121.6 |
121.0 |
CZ2 |
CH2 |
CZ3 |
122.1 |
121.0 |
CZ2 |
CH2 |
HH2 |
119.0 |
119.4 |
CZ3 |
CH2 |
HH2 |
119.0 |
119.5 |
CH2 |
CZ3 |
CE3 |
121.3 |
120.8 |
CH2 |
CZ3 |
HZ3 |
119.4 |
119.7 |
CE3 |
CZ3 |
HZ3 |
119.3 |
119.5 |
CZ3 |
CE3 |
CD2 |
118.0 |
119.2 |
CZ3 |
CE3 |
HE3 |
121.0 |
120.0 |
CD2 |
CE3 |
HE3 |
121.0 |
120.9 |
O |
C |
OXT |
|
122.2 |
C |
OXT |
HXT |
|
114.8 |
Torsion Angles for DTR
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
H |
N |
CA |
H2 |
120.0 |
166.6 |
CB |
CA |
N |
C |
121.6 |
124.0 |
CB |
CA |
N |
HA |
241.5 |
239.8 |
N |
CA |
CB |
CG |
297.6 |
157.5 |
N |
CA |
CB |
HB2 |
179.1 |
280.3 |
N |
CA |
CB |
HB3 |
57.6 |
32.6 |
C |
CA |
N |
HA |
119.8 |
115.8 |
N |
CA |
C |
O |
215.1 |
34.7 |
N |
CA |
C |
OXT |
|
214.4 |
CA |
N |
H |
H2 |
240.0 |
193.7 |
H |
N |
CA |
CB |
89.5 |
71.0 |
H |
N |
CA |
C |
327.9 |
307.0 |
H |
N |
CA |
HA |
208.1 |
191.2 |
CA |
N |
H2 |
H |
120.0 |
166.4 |
H2 |
N |
CA |
CB |
329.5 |
264.5 |
H2 |
N |
CA |
C |
207.9 |
140.4 |
H2 |
N |
CA |
HA |
88.1 |
24.7 |
CB |
CA |
N |
H |
89.5 |
71.0 |
CB |
CA |
N |
H2 |
329.5 |
264.5 |
N |
CA |
CB |
C |
238.7 |
236.0 |
N |
CA |
CB |
HA |
118.9 |
117.4 |
C |
CA |
CB |
HA |
240.2 |
241.4 |
CB |
CA |
C |
O |
92.7 |
270.8 |
CB |
CA |
C |
OXT |
|
90.4 |
CG |
CB |
CA |
HB2 |
118.5 |
237.1 |
CG |
CB |
CA |
HB3 |
240.0 |
124.9 |
CA |
CB |
CG |
CD1 |
87.6 |
90.0 |
CA |
CB |
CG |
CD2 |
270.9 |
270.0 |
HB2 |
CB |
CA |
HB3 |
121.5 |
247.7 |
C |
CA |
N |
H |
327.9 |
307.0 |
C |
CA |
N |
H2 |
207.9 |
140.4 |
N |
CA |
C |
CB |
122.5 |
123.9 |
N |
CA |
C |
HA |
241.1 |
244.8 |
CB |
CA |
C |
HA |
118.6 |
120.8 |
C |
CA |
CB |
CG |
59.0 |
281.5 |
C |
CA |
CB |
HB2 |
300.4 |
44.3 |
C |
CA |
CB |
HB3 |
178.9 |
156.6 |
O |
C |
CA |
OXT |
|
180.3 |
CA |
C |
OXT |
HXT |
|
180.4 |
HA |
CA |
N |
H |
208.1 |
191.2 |
HA |
CA |
N |
H2 |
88.1 |
24.7 |
N |
CA |
HA |
CB |
239.3 |
239.6 |
N |
CA |
HA |
C |
119.5 |
118.5 |
CB |
CA |
HA |
C |
240.2 |
238.9 |
HA |
CA |
CB |
CG |
178.8 |
40.0 |
HA |
CA |
CB |
HB2 |
60.2 |
162.9 |
HA |
CA |
CB |
HB3 |
298.7 |
275.2 |
HA |
CA |
C |
O |
334.1 |
150.0 |
HA |
CA |
C |
OXT |
|
329.6 |
CG |
CB |
CA |
C |
59.0 |
281.5 |
CG |
CB |
CA |
HA |
178.8 |
40.0 |
CA |
CB |
CG |
HB2 |
241.5 |
122.4 |
CA |
CB |
CG |
HB3 |
120.0 |
236.6 |
HB2 |
CB |
CG |
HB3 |
238.5 |
114.2 |
CD1 |
CG |
CB |
CD2 |
176.7 |
180.0 |
CB |
CG |
CD1 |
NE1 |
183.1 |
180.0 |
CB |
CG |
CD1 |
HD1 |
3.1 |
360.0 |
CB |
CG |
CD2 |
CE2 |
176.9 |
180.0 |
CB |
CG |
CD2 |
CE3 |
356.7 |
360.0 |
HB2 |
CB |
CA |
C |
300.4 |
44.3 |
HB2 |
CB |
CA |
HA |
60.2 |
162.9 |
CA |
CB |
HB2 |
CG |
121.9 |
234.5 |
CA |
CB |
HB2 |
HB3 |
240.9 |
115.4 |
CG |
CB |
HB2 |
HB3 |
119.0 |
240.9 |
HB2 |
CB |
CG |
CD1 |
206.1 |
327.6 |
HB2 |
CB |
CG |
CD2 |
29.4 |
147.5 |
HB3 |
CB |
CA |
C |
178.9 |
156.6 |
HB3 |
CB |
CA |
HA |
298.7 |
275.2 |
CA |
CB |
HB3 |
CG |
237.2 |
126.5 |
CA |
CB |
HB3 |
HB2 |
118.6 |
244.4 |
CG |
CB |
HB3 |
HB2 |
241.4 |
117.9 |
HB3 |
CB |
CG |
CD1 |
327.6 |
213.3 |
HB3 |
CB |
CG |
CD2 |
150.9 |
33.3 |
CD1 |
CG |
CB |
HB2 |
206.1 |
327.6 |
CD1 |
CG |
CB |
HB3 |
327.6 |
213.3 |
CB |
CG |
CD1 |
CD2 |
182.7 |
180.0 |
CD1 |
CG |
CD2 |
CE2 |
359.7 |
360.0 |
CD1 |
CG |
CD2 |
CE3 |
179.4 |
180.0 |
NE1 |
CD1 |
CG |
HD1 |
180.0 |
180.0 |
CG |
CD1 |
NE1 |
CE2 |
359.7 |
0.0 |
CG |
CD1 |
NE1 |
HE1 |
179.7 |
180.0 |
CD2 |
CG |
CB |
HB2 |
29.4 |
147.5 |
CD2 |
CG |
CB |
HB3 |
150.9 |
33.3 |
CB |
CG |
CD2 |
CD1 |
177.3 |
180.0 |
CD2 |
CG |
CD1 |
NE1 |
0.4 |
360.0 |
CD2 |
CG |
CD1 |
HD1 |
180.4 |
180.0 |
NE1 |
CE2 |
CD2 |
CG |
0.2 |
0.1 |
CZ2 |
CE2 |
CD2 |
CG |
180.4 |
179.9 |
CE2 |
CD2 |
CG |
CE3 |
180.2 |
180.0 |
CZ3 |
CE3 |
CD2 |
CG |
180.0 |
180.0 |
CG |
CD2 |
CE3 |
HE3 |
0.0 |
0.0 |
NE1 |
CD1 |
CG |
CD2 |
0.4 |
360.0 |
CG |
CD1 |
NE1 |
HD1 |
180.0 |
180.0 |
CE2 |
NE1 |
CD1 |
HE1 |
180.0 |
180.1 |
CD1 |
NE1 |
CE2 |
CZ2 |
179.8 |
180.1 |
CD1 |
NE1 |
CE2 |
CD2 |
0.0 |
359.9 |
HD1 |
CD1 |
CG |
CD2 |
180.4 |
180.0 |
CG |
CD1 |
HD1 |
NE1 |
180.0 |
180.0 |
HD1 |
CD1 |
NE1 |
CE2 |
179.7 |
180.0 |
HD1 |
CD1 |
NE1 |
HE1 |
359.7 |
360.0 |
CG |
CD2 |
CE2 |
NE1 |
0.2 |
0.1 |
CE2 |
NE1 |
CD1 |
HD1 |
179.7 |
180.0 |
CD1 |
NE1 |
CE2 |
HE1 |
180.0 |
179.9 |
CZ2 |
CE2 |
NE1 |
CD2 |
179.8 |
180.1 |
NE1 |
CE2 |
CZ2 |
CH2 |
179.8 |
179.9 |
NE1 |
CE2 |
CZ2 |
HZ2 |
359.8 |
360.0 |
NE1 |
CE2 |
CD2 |
CE3 |
180.4 |
180.0 |
HE1 |
NE1 |
CD1 |
HD1 |
359.7 |
360.0 |
CD1 |
NE1 |
HE1 |
CE2 |
180.0 |
180.1 |
HE1 |
NE1 |
CE2 |
CZ2 |
359.8 |
0.1 |
HE1 |
NE1 |
CE2 |
CD2 |
180.0 |
180.0 |
CG |
CD2 |
CE2 |
CZ2 |
180.4 |
179.9 |
CZ2 |
CE2 |
NE1 |
HE1 |
359.8 |
0.1 |
NE1 |
CE2 |
CZ2 |
CD2 |
180.2 |
179.9 |
CZ2 |
CE2 |
CD2 |
CE3 |
0.6 |
359.9 |
CH2 |
CZ2 |
CE2 |
HZ2 |
180.0 |
180.0 |
CE2 |
CZ2 |
CH2 |
CZ3 |
359.9 |
359.9 |
CE2 |
CZ2 |
CH2 |
HH2 |
179.9 |
180.0 |
CG |
CD2 |
CE2 |
CE3 |
179.8 |
180.0 |
CD2 |
CE2 |
NE1 |
HE1 |
180.0 |
180.0 |
NE1 |
CE2 |
CD2 |
CZ2 |
179.8 |
180.1 |
CD2 |
CE2 |
CZ2 |
CH2 |
359.6 |
0.1 |
CD2 |
CE2 |
CZ2 |
HZ2 |
179.6 |
180.1 |
CZ3 |
CE3 |
CD2 |
CE2 |
359.8 |
0.1 |
CE2 |
CD2 |
CE3 |
HE3 |
179.8 |
180.0 |
CH2 |
CZ2 |
CE2 |
CD2 |
359.6 |
0.1 |
CE2 |
CZ2 |
CH2 |
HZ2 |
180.0 |
180.0 |
CZ3 |
CH2 |
CZ2 |
HH2 |
180.0 |
179.9 |
CZ2 |
CH2 |
CZ3 |
CE3 |
0.4 |
0.1 |
CZ2 |
CH2 |
CZ3 |
HZ3 |
180.4 |
180.0 |
HZ2 |
CZ2 |
CE2 |
CD2 |
179.6 |
180.1 |
CE2 |
CZ2 |
HZ2 |
CH2 |
180.0 |
180.0 |
HZ2 |
CZ2 |
CH2 |
CZ3 |
180.0 |
179.9 |
HZ2 |
CZ2 |
CH2 |
HH2 |
359.9 |
360.0 |
CZ3 |
CH2 |
CZ2 |
HZ2 |
180.0 |
179.9 |
CZ2 |
CH2 |
CZ3 |
HH2 |
180.0 |
180.1 |
CE3 |
CZ3 |
CH2 |
HZ3 |
180.0 |
180.0 |
CH2 |
CZ3 |
CE3 |
CD2 |
359.8 |
359.9 |
CH2 |
CZ3 |
CE3 |
HE3 |
179.8 |
180.0 |
HH2 |
CH2 |
CZ2 |
HZ2 |
359.9 |
360.0 |
CZ2 |
CH2 |
HH2 |
CZ3 |
180.0 |
179.9 |
HH2 |
CH2 |
CZ3 |
CE3 |
180.4 |
180.0 |
HH2 |
CH2 |
CZ3 |
HZ3 |
0.4 |
360.0 |
CG |
CD2 |
CE3 |
CZ3 |
180.0 |
180.0 |
CE2 |
CD2 |
CE3 |
CZ3 |
359.8 |
0.1 |
CE3 |
CZ3 |
CH2 |
HH2 |
180.4 |
180.0 |
CH2 |
CZ3 |
CE3 |
HZ3 |
180.0 |
180.0 |
CD2 |
CE3 |
CZ3 |
HE3 |
180.0 |
180.0 |
HZ3 |
CZ3 |
CH2 |
HH2 |
0.4 |
360.0 |
CH2 |
CZ3 |
HZ3 |
CE3 |
180.0 |
180.0 |
HZ3 |
CZ3 |
CE3 |
CD2 |
179.8 |
180.0 |
HZ3 |
CZ3 |
CE3 |
HE3 |
359.7 |
0.0 |
CG |
CD2 |
CE3 |
CE2 |
180.2 |
180.0 |
CD2 |
CE3 |
CZ3 |
HZ3 |
179.8 |
180.0 |
CZ3 |
CE3 |
CD2 |
HE3 |
180.0 |
180.0 |
HE3 |
CE3 |
CZ3 |
HZ3 |
359.7 |
0.0 |
CZ3 |
CE3 |
HE3 |
CD2 |
180.0 |
180.0 |
O |
C |
CA |
HA |
334.1 |
150.0 |
CA |
C |
O |
OXT |
|
179.7 |
O |
C |
OXT |
HXT |
|
0.1 |
OXT |
C |
CA |
HA |
|
329.6 |
CA |
C |
OXT |
O |
|
180.3 |