PDB Chemical Component DTP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DTP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
PG O1G 1.483 1.479
PG O2G 1.393 1.610
PG O3G 1.555 1.609
PG O3B 1.699 1.611
O2G HOG2 0.951 0.966
O3G HOG3 0.951 0.967
PB O1B 1.513 1.480
PB O2B 1.406 1.609
PB O3B 1.627 1.610
PB O3A 1.621 1.611
O2B HOB2 0.950 0.967
PA O1A 1.471 1.479
PA O2A 1.439 1.610
PA O3A 1.623 1.609
PA O5' 1.488 1.609
O2A HOA2 0.950 0.966
O5' C5' 1.461 1.427
C5' C4' 1.547 1.530
C5' H5'1 1.115 1.090
C5' H5'2 1.116 1.091
C4' O4' 1.445 1.445
C4' C3' 1.518 1.550
C4' H4' 1.115 1.090
O4' C1' 1.408 1.438
C3' O3' 1.415 1.429
C3' C2' 1.521 1.548
C3' H3' 1.115 1.090
O3' HO3' 0.949 0.967
C2' C1' 1.514 1.541
C2' H2'1 1.115 1.089
C2' H2'2 1.114 1.090
C1' N9 1.456 1.464
C1' H1' 1.114 1.090
N9 C8 1.348 1.363
N9 C4 1.372 1.373
C8 N7 1.305 1.301
C8 H8 1.103 1.080
N7 C5 1.366 1.355
C5 C6 1.422 1.405
C5 C4 1.365 1.405
C6 N6 1.324 1.383
C6 N1 1.350 1.328
N6 HN61 1.020 0.971
N6 HN62 1.019 0.970
N1 C2 1.338 1.320
C2 N3 1.336 1.316
C2 H2 1.102 1.080
N3 C4 1.343 1.328

Bond Angles for DTP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1G PG O2G 105.2 109.5
O1G PG O3G 112.8 109.5
O1G PG O3B 114.7 109.5
O2G PG O3G 112.0 109.4
O2G PG O3B 102.7 109.5
PG O2G HOG2 105.2 106.8
O3G PG O3B 109.1 109.5
PG O3G HOG3 112.7 106.9
PG O3B PB 136.1 106.8
O1B PB O2B 119.4 109.5
O1B PB O3B 112.0 109.4
O1B PB O3A 104.9 109.4
O2B PB O3B 107.2 109.5
O2B PB O3A 108.4 109.5
PB O2B HOB2 119.5 106.8
O3B PB O3A 103.7 109.5
PB O3A PA 127.4 106.8
O1A PA O2A 115.7 109.5
O1A PA O3A 100.5 109.5
O1A PA O5' 109.4 109.5
O2A PA O3A 118.1 109.4
O2A PA O5' 107.8 109.4
PA O2A HOA2 115.7 106.8
O3A PA O5' 104.5 109.5
PA O5' C5' 120.7 106.9
O5' C5' C4' 117.8 109.5
O5' C5' H5'1 109.2 109.6
O5' C5' H5'2 109.2 109.4
C4' C5' H5'1 109.3 109.4
C4' C5' H5'2 109.3 109.4
C5' C4' O4' 112.4 110.8
C5' C4' C3' 116.3 110.6
C5' C4' H4' 101.3 110.5
H5'1 C5' H5'2 100.9 109.4
O4' C4' C3' 105.9 103.6
O4' C4' H4' 112.6 110.6
C4' O4' C1' 112.0 106.8
C3' C4' H4' 108.5 110.6
C4' C3' O3' 110.3 110.9
C4' C3' C2' 105.8 102.1
C4' C3' H3' 112.4 110.9
O4' C1' C2' 108.1 107.4
O4' C1' N9 106.9 109.9
O4' C1' H1' 113.6 109.9
O3' C3' C2' 112.5 110.9
O3' C3' H3' 105.7 110.8
C3' O3' HO3' 110.3 106.8
C2' C3' H3' 110.2 110.9
C3' C2' C1' 105.5 104.2
C3' C2' H2'1 113.7 110.5
C3' C2' H2'2 113.7 110.5
C1' C2' H2'1 113.7 110.5
C1' C2' H2'2 113.7 110.5
C2' C1' N9 113.7 109.8
C2' C1' H1' 106.8 109.9
H2'1 C2' H2'2 96.8 110.5
N9 C1' H1' 108.0 109.9
C1' N9 C8 137.2 126.3
C1' N9 C4 117.3 126.3
C8 N9 C4 105.4 107.4
N9 C8 N7 113.9 109.9
N9 C8 H8 124.5 125.0
N9 C4 C5 105.9 106.0
N9 C4 N3 127.4 135.0
N7 C8 H8 121.6 125.1
C8 N7 C5 104.0 109.5
N7 C5 C6 132.4 134.7
N7 C5 C4 110.7 107.1
C6 C5 C4 116.9 118.2
C5 C6 N6 123.9 120.8
C5 C6 N1 117.8 118.5
C5 C4 N3 126.7 119.0
N6 C6 N1 118.3 120.8
C6 N6 HN61 123.9 120.0
C6 N6 HN62 107.1 120.1
C6 N1 C2 118.5 121.2
HN61 N6 HN62 107.1 119.9
N1 C2 N3 128.5 122.4
N1 C2 H2 115.8 118.8
N3 C2 H2 115.7 118.8
C2 N3 C4 111.5 120.7

Torsion Angles for DTP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2G PG O1G O3G 122.3 120.0
O2G PG O1G O3B 248.0 240.0
O1G PG O2G HOG2 180.0 300.0
O3G PG O1G O3B 125.7 120.0
O1G PG O3G HOG3 180.0 180.0
O1G PG O3B PB 7.9 60.0
O1G PG O2G O3G 237.2 240.0
O1G PG O2G O3B 120.3 120.0
O3G PG O2G O3B 243.1 240.0
O2G PG O3G HOG3 61.6 60.0
O2G PG O3B PB 121.4 180.0
O1G PG O3G O2G 118.4 120.0
O1G PG O3G O3B 231.4 240.0
O2G PG O3G O3B 113.0 120.0
O3G PG O2G HOG2 302.8 60.1
O3G PG O3B PB 240.3 300.0
O1G PG O3B O2G 246.5 240.0
O1G PG O3B O3G 127.6 120.0
O2G PG O3B O3G 241.0 240.0
O3B PG O2G HOG2 59.7 180.0
O3B PG O3G HOG3 308.6 300.0
O1B PB O3B PG 6.9 60.1
O2B PB O3B PG 234.1 300.0
PG O3B PB O3A 119.6 180.0
HOG2 O2G PG O3G 302.8 60.1
HOG2 O2G PG O3B 59.7 180.0
HOG3 O3G PG O3B 308.6 300.0
PG O3B PB O1B 6.9 60.1
O2B PB O1B O3B 126.4 120.1
O2B PB O1B O3A 238.4 240.0
O1B PB O2B HOB2 180.0 180.1
O3B PB O1B O3A 111.9 119.9
O1B PB O3A PA 5.9 299.9
PG O3B PB O2B 234.1 300.0
O1B PB O2B O3B 231.3 240.0
O1B PB O2B O3A 119.9 120.0
O3B PB O2B O3A 248.6 240.0
O2B PB O3A PA 134.5 59.9
O1B PB O3B O2B 132.8 120.1
O1B PB O3B O3A 247.3 240.1
O2B PB O3B O3A 114.5 120.0
O3B PB O2B HOB2 308.7 300.1
O3B PB O3A PA 248.1 180.0
O1B PB O3A O2B 231.4 240.0
O1B PB O3A O3B 117.7 119.9
O2B PB O3A O3B 246.3 239.9
O3A PB O2B HOB2 60.1 60.1
O1A PA O3A PB 294.3 300.1
O2A PA O3A PB 61.1 60.1
PB O3A PA O5' 180.8 180.0
HOB2 O2B PB O3B 308.7 300.1
HOB2 O2B PB O3A 60.1 60.1
PB O3A PA O1A 294.3 300.1
O2A PA O1A O3A 231.6 240.0
O2A PA O1A O5' 122.0 120.0
O1A PA O2A HOA2 179.9 180.1
O3A PA O1A O5' 250.4 239.9
O1A PA O5' C5' 175.1 60.0
PB O3A PA O2A 61.1 60.1
O1A PA O2A O3A 119.1 120.0
O1A PA O2A O5' 237.1 240.0
O3A PA O2A O5' 118.0 120.0
O2A PA O5' C5' 48.5 300.0
O1A PA O3A O2A 233.2 240.0
O1A PA O3A O5' 113.4 120.1
O2A PA O3A O5' 240.2 240.1
O3A PA O2A HOA2 60.8 60.0
O3A PA O5' C5' 282.0 180.1
O1A PA O5' O2A 126.6 120.0
O1A PA O5' O3A 253.1 239.9
O2A PA O5' O3A 126.5 119.9
O5' PA O2A HOA2 302.8 300.0
PA O5' C5' C4' 203.9 180.1
PA O5' C5' H5'1 329.2 60.0
PA O5' C5' H5'2 78.6 300.0
HOA2 O2A PA O3A 60.8 60.0
HOA2 O2A PA O5' 302.8 300.0
C4' C5' O5' H5'1 234.7 120.1
C4' C5' O5' H5'2 125.3 240.1
O5' C5' C4' O4' 287.7 65.7
O5' C5' C4' C3' 49.9 180.0
O5' C5' C4' H4' 167.2 302.8
H5'1 C5' O5' H5'2 250.6 120.0
O5' C5' C4' H5'1 125.3 239.9
O5' C5' C4' H5'2 234.7 120.0
H5'1 C5' C4' H5'2 109.5 240.1
O4' C4' C5' C3' 237.7 245.7
O4' C4' C5' H4' 120.4 122.9
C5' C4' O4' C1' 114.0 158.6
C3' C4' C5' H4' 242.7 237.2
C5' C4' C3' O3' 129.4 86.1
C5' C4' C3' C2' 251.4 204.3
C5' C4' C3' H3' 11.7 322.5
O5' C5' H5'1 C4' 229.9 120.1
O5' C5' H5'1 H5'2 114.9 240.0
C4' C5' H5'1 H5'2 245.0 119.9
H5'1 C5' C4' O4' 162.4 185.8
H5'1 C5' C4' C3' 284.6 300.1
H5'1 C5' C4' H4' 42.0 63.0
O5' C5' H5'2 C4' 130.1 240.0
O5' C5' H5'2 H5'1 245.1 120.1
C4' C5' H5'2 H5'1 115.0 240.1
H5'2 C5' C4' O4' 52.9 305.7
H5'2 C5' C4' C3' 175.2 60.0
H5'2 C5' C4' H4' 292.5 182.9
O4' C4' C5' H5'1 162.4 185.8
O4' C4' C5' H5'2 52.9 305.7
C5' C4' O4' C3' 127.9 118.7
C5' C4' O4' H4' 246.3 237.2
C3' C4' O4' H4' 118.4 118.5
O4' C4' C3' O3' 255.0 204.8
O4' C4' C3' C2' 17.0 323.0
O4' C4' C3' H3' 137.3 81.2
C4' O4' C1' C2' 4.9 333.6
C4' O4' C1' N9 242.2 214.2
C4' O4' C1' H1' 123.3 93.2
C3' C4' C5' H5'1 284.6 300.1
C3' C4' C5' H5'2 175.2 60.0
C5' C4' C3' O4' 234.4 241.3
C5' C4' C3' H4' 113.3 122.8
O4' C4' C3' H4' 238.9 241.5
C3' C4' O4' C1' 346.1 39.9
O3' C3' C4' C2' 238.0 241.8
O3' C3' C4' H3' 117.7 123.6
C4' C3' O3' HO3' 180.0 174.2
C2' C3' C4' H3' 239.7 241.8
C4' C3' C2' C1' 345.9 20.9
C4' C3' C2' H2'1 111.2 262.2
C4' C3' C2' H2'2 220.7 139.6
H4' C4' C5' H5'1 42.0 63.0
H4' C4' C5' H5'2 292.5 182.9
C5' C4' H4' O4' 120.3 123.0
C5' C4' H4' C3' 237.2 237.1
O4' C4' H4' C3' 116.9 114.2
H4' C4' O4' C1' 227.7 281.4
H4' C4' C3' O3' 16.1 323.3
H4' C4' C3' C2' 138.1 81.5
H4' C4' C3' H3' 258.4 199.7
C1' O4' C4' C3' 346.1 39.9
C1' O4' C4' H4' 227.7 281.4
C3' C2' C1' O4' 6.1 2.0
O4' C1' C2' H2'1 240.8 120.7
O4' C1' C2' H2'2 131.4 243.3
C2' C1' O4' N9 122.7 119.4
C2' C1' O4' H1' 241.7 240.5
N9 C1' O4' H1' 119.0 121.0
O4' C1' N9 C8 76.6 28.2
O4' C1' N9 C4 255.1 208.3
O3' C3' C4' H4' 16.1 323.3
C4' C3' O3' C2' 117.9 112.7
C4' C3' O3' H3' 238.2 236.3
C2' C3' O3' H3' 120.4 123.6
O3' C3' C2' C1' 106.5 139.1
O3' C3' C2' H2'1 231.7 20.4
O3' C3' C2' H2'2 341.2 257.8
C2' C3' C4' H4' 138.1 81.5
C4' C3' C2' O3' 239.5 241.8
C4' C3' C2' H3' 121.8 118.2
O4' C1' C2' C3' 6.1 2.0
O3' C3' C2' H3' 242.3 236.4
C2' C3' O3' HO3' 62.1 61.5
C1' C2' C3' H2'1 234.8 118.7
C1' C2' C3' H2'2 125.3 241.3
C3' C2' C1' N9 124.5 121.4
C3' C2' C1' H1' 243.5 242.5
H2'1 C2' C3' H2'2 250.5 122.6
H3' C3' C4' H4' 258.4 199.7
C4' C3' H3' O3' 120.4 123.7
C4' C3' H3' C2' 242.3 247.3
O3' C3' H3' C2' 121.9 123.6
H3' C3' O3' HO3' 301.8 297.8
H3' C3' C2' C1' 224.2 262.7
H3' C3' C2' H2'1 349.4 144.0
H3' C3' C2' H2'2 98.9 21.4
HO3' O3' C3' C2' 62.1 61.5
HO3' O3' C3' H3' 301.8 297.8
O4' C1' C2' N9 241.5 240.5
O4' C1' C2' H1' 122.6 119.5
C1' C2' C3' H3' 224.2 262.7
C3' C2' C1' H2'1 125.2 241.3
C3' C2' C1' H2'2 234.7 118.7
H2'1 C2' C1' H2'2 109.5 237.4
N9 C1' C2' H1' 241.0 239.0
C2' C1' N9 C8 317.4 270.2
C2' C1' N9 C4 136.0 90.3
H2'1 C2' C3' H3' 349.4 144.0
C3' C2' H2'1 C1' 239.3 114.8
C3' C2' H2'1 H2'2 119.7 237.4
C1' C2' H2'1 H2'2 240.4 122.6
H2'1 C2' C1' N9 359.3 240.1
H2'1 C2' C1' H1' 118.3 1.1
H2'2 C2' C3' H3' 98.9 21.4
C3' C2' H2'2 C1' 120.8 245.2
C3' C2' H2'2 H2'1 240.4 122.6
C1' C2' H2'2 H2'1 119.6 237.4
H2'2 C2' C1' N9 249.8 2.7
H2'2 C2' C1' H1' 8.8 123.7
O4' C1' N9 C2' 119.2 118.0
O4' C1' N9 H1' 237.4 239.0
N9 C1' C2' H2'1 359.3 240.1
N9 C1' C2' H2'2 249.8 2.7
C2' C1' N9 H1' 118.3 121.0
C8 N9 C1' C4 181.4 179.9
C1' N9 C8 N7 179.4 180.1
C1' N9 C8 H8 359.4 0.1
C1' N9 C4 C5 179.9 180.2
C1' N9 C4 N3 1.6 360.0
O4' C1' H1' C2' 240.9 242.0
O4' C1' H1' N9 118.3 121.0
H1' C1' C2' H2'1 118.3 1.1
H1' C1' C2' H2'2 8.8 123.7
C2' C1' H1' N9 237.4 239.0
H1' C1' N9 C8 199.1 149.2
H1' C1' N9 C4 17.7 329.3
C8 N9 C1' H1' 199.1 149.2
C1' N9 C8 C4 178.7 180.1
C8 N9 C4 C5 358.9 0.3
C8 N9 C4 N3 180.5 180.1
N7 C8 N9 H8 180.1 180.0
N9 C8 N7 C5 359.9 359.8
C4 N9 C1' H1' 17.7 329.3
C1' N9 C4 C8 181.0 179.9
C4 N9 C8 N7 0.8 359.9
C4 N9 C8 H8 180.7 180.0
N7 C5 C4 N9 1.2 359.6
C6 C5 C4 N9 180.3 180.3
C5 C4 N9 N3 178.3 180.2
C2 N3 C4 N9 179.4 180.0
N7 C8 N9 C4 0.8 359.9
N9 C8 N7 H8 179.9 180.0
C8 N7 C5 C6 180.4 179.5
C8 N7 C5 C4 359.3 0.4
H8 C8 N9 C4 180.7 180.0
N9 C8 H8 N7 180.1 180.0
H8 C8 N7 C5 180.0 179.8
N9 C4 C5 N7 1.2 359.6
C5 N7 C8 H8 180.0 179.8
C6 C5 N7 C4 181.1 179.1
N7 C5 C6 N6 359.4 0.7
N7 C5 C6 N1 179.5 180.4
N7 C5 C4 N3 179.5 179.7
N9 C4 C5 C6 180.3 180.3
N7 C5 C6 C4 178.9 181.0
C6 C5 C4 N3 358.6 0.5
N6 C6 C5 N1 179.8 180.2
C5 C6 N6 HN61 180.0 179.7
C5 C6 N6 HN62 54.7 359.5
C5 C6 N1 C2 359.8 0.3
N9 C4 C5 N3 181.7 179.9
N7 C5 C4 C6 180.9 179.3
C4 C5 C6 N6 180.5 179.7
C4 C5 C6 N1 0.7 359.5
C2 N3 C4 C5 1.4 359.8
N6 C6 C5 C4 180.5 179.7
C5 C6 N6 N1 180.2 179.7
N6 C6 N1 C2 180.0 180.0
HN61 N6 C6 HN62 125.3 180.2
N1 C6 C5 C4 0.7 359.5
C5 C6 N1 N6 179.9 180.2
N1 C6 N6 HN61 359.9 360.0
N1 C6 N6 HN62 234.6 179.8
C6 N1 C2 N3 0.3 0.0
C6 N1 C2 H2 180.3 180.0
HN61 N6 C6 N1 359.9 360.0
C6 N6 HN61 HN62 234.7 179.8
HN62 N6 C6 N1 234.6 179.8
C6 N6 HN62 HN61 134.9 180.2
N3 C2 N1 H2 180.0 180.0
N1 C2 N3 C4 359.2 359.9
N9 C4 N3 C2 179.4 180.0
C5 C4 N3 C2 1.4 359.8
N1 C2 N3 H2 180.0 180.0
N1 C2 H2 N3 180.0 180.0
H2 C2 N3 C4 179.2 179.9
N9 C4 N3 C5 178.0 180.2
C4 N3 C2 H2 179.2 179.9