PDB Chemical Component DT5

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DT5

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N6 S1 1.467 1.656
N6 H6 1.020 0.971
N6 H7 1.020 0.970
S1 O2 1.459 1.421
S1 O3 1.583 1.421
S1 C16 1.729 1.761
C16 C15 1.383 1.383
C16 C17 1.402 1.383
C15 C14 1.392 1.382
C15 H15 1.103 1.080
C17 C18 1.389 1.381
C17 H17 1.103 1.080
C18 C13 1.397 1.389
C18 H18 1.103 1.080
C14 C13 1.410 1.388
C14 H14 1.103 1.080
C13 N5 1.366 1.398
N5 C9 1.405 1.379
N5 H5 1.020 0.970
C9 N2 1.338 1.367
C9 C8 1.434 1.369
N2 C10 1.322 1.366
N2 N3 1.317 1.401
C10 N1 1.336 1.338
C10 N4 1.331 1.329
N1 C7 1.357 1.322
N4 C11 1.363 1.329
C11 N3 1.359 1.311
C11 H11 1.103 1.080
C8 C7 1.419 1.400
C8 H8 1.103 1.080
C7 O1 1.382 1.355
O1 C1 1.371 1.430
C1 C2 1.534 1.530
C1 C6 1.539 1.529
C1 H1 1.115 1.090
C2 C3 1.537 1.530
C2 H2C1 1.115 1.090
C2 H2C2 1.115 1.089
C3 C4 1.531 1.529
C3 H3C1 1.115 1.090
C3 H3C2 1.115 1.090
C4 C5 1.529 1.530
C4 H4C1 1.115 1.090
C4 H4C2 1.115 1.091
C5 C6 1.532 1.530
C5 H5C1 1.115 1.090
C5 H5C2 1.115 1.089
C6 H6C1 1.115 1.090
C6 H6C2 1.115 1.090

Bond Angles for DT5

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
S1 N6 H6 112.1 120.0
S1 N6 H7 109.7 120.0
N6 S1 O2 109.7 105.7
N6 S1 O3 109.6 105.8
N6 S1 C16 108.3 107.4
H6 N6 H7 112.1 120.0
O2 S1 O3 109.8 125.4
O2 S1 C16 109.4 105.8
O3 S1 C16 110.0 105.8
S1 C16 C15 120.2 119.9
S1 C16 C17 119.5 119.9
C15 C16 C17 120.3 120.2
C16 C15 C14 119.8 120.1
C16 C15 H15 120.1 120.0
C16 C17 C18 120.2 120.1
C16 C17 H17 119.9 120.0
C14 C15 H15 120.1 120.0
C15 C14 C13 120.3 119.9
C15 C14 H14 119.9 120.0
C18 C17 H17 119.9 120.0
C17 C18 C13 119.8 119.9
C17 C18 H18 120.1 120.0
C13 C18 H18 120.1 120.0
C18 C13 C14 119.4 119.9
C18 C13 N5 121.2 120.1
C13 C14 H14 119.8 120.1
C14 C13 N5 118.9 120.1
C13 N5 C9 125.0 120.0
C13 N5 H5 117.5 120.0
C9 N5 H5 117.5 120.0
N5 C9 N2 118.4 120.6
N5 C9 C8 123.1 120.5
N2 C9 C8 118.4 118.9
C9 N2 C10 122.1 120.3
C9 N2 N3 128.6 133.3
C9 C8 C7 117.6 119.1
C9 C8 H8 121.2 120.4
C10 N2 N3 109.3 106.4
N2 C10 N1 122.2 120.4
N2 C10 N4 109.1 107.2
N2 N3 C11 107.4 107.1
N1 C10 N4 128.6 132.4
C10 N1 C7 120.5 121.0
C10 N4 C11 106.7 109.7
N1 C7 C8 119.0 120.3
N1 C7 O1 117.9 119.8
N4 C11 N3 107.4 109.6
N4 C11 H11 126.3 125.2
N3 C11 H11 126.3 125.3
C7 C8 H8 121.2 120.5
C8 C7 O1 123.0 119.8
C7 O1 C1 114.6 106.8
O1 C1 C2 108.2 109.4
O1 C1 C6 107.1 109.4
O1 C1 H1 110.8 109.5
C2 C1 C6 109.0 109.5
C2 C1 H1 110.8 109.5
C1 C2 C3 110.5 109.4
C1 C2 H2C1 111.9 109.4
C1 C2 H2C2 111.8 109.5
C6 C1 H1 110.8 109.5
C1 C6 C5 111.0 109.5
C1 C6 H6C1 111.7 109.5
C1 C6 H6C2 111.6 109.5
C3 C2 H2C1 111.8 109.5
C3 C2 H2C2 111.9 109.5
C2 C3 C4 109.7 109.5
C2 C3 H3C1 112.1 109.4
C2 C3 H3C2 112.1 109.5
H2C1 C2 H2C2 98.5 109.5
C4 C3 H3C1 112.1 109.5
C4 C3 H3C2 112.1 109.5
C3 C4 C5 109.1 109.5
C3 C4 H4C1 112.4 109.5
C3 C4 H4C2 112.3 109.4
H3C1 C3 H3C2 98.3 109.4
C5 C4 H4C1 112.3 109.5
C5 C4 H4C2 112.3 109.4
C4 C5 C6 109.6 109.5
C4 C5 H5C1 112.2 109.4
C4 C5 H5C2 112.1 109.5
H4C1 C4 H4C2 98.1 109.4
C6 C5 H5C1 112.2 109.5
C6 C5 H5C2 112.2 109.5
C5 C6 H6C1 111.6 109.4
C5 C6 H6C2 111.6 109.4
H5C1 C5 H5C2 98.3 109.5
H6C1 C6 H6C2 98.8 109.5

Torsion Angles for DT5

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H6 N6 S1 H7 234.7 180.2
O2 S1 N6 O3 239.3 134.7
O2 S1 N6 C16 119.4 247.4
O3 S1 N6 C16 240.0 112.6
N6 S1 C16 C15 235.3 90.1
N6 S1 C16 C17 54.5 269.7
S1 N6 H6 H7 123.9 179.8
H6 N6 S1 O2 54.8 247.3
H6 N6 S1 O3 175.4 112.6
H6 N6 S1 C16 295.4 359.9
S1 N6 H7 H6 234.8 180.2
H7 N6 S1 O2 180.0 67.2
H7 N6 S1 O3 300.7 292.4
H7 N6 S1 C16 60.6 179.8
O2 S1 N6 H6 54.8 247.3
O2 S1 N6 H7 180.0 67.2
N6 S1 O2 O3 120.5 236.9
N6 S1 O2 C16 241.3 113.7
O3 S1 O2 C16 120.8 236.8
O2 S1 C16 C15 115.7 202.6
O2 S1 C16 C17 295.0 22.3
O3 S1 N6 H6 175.4 112.6
O3 S1 N6 H7 300.7 292.4
N6 S1 O3 O2 239.4 123.0
N6 S1 O3 C16 118.9 246.2
O2 S1 O3 C16 239.5 123.2
O3 S1 C16 C15 355.0 337.5
O3 S1 C16 C17 174.3 157.1
C16 S1 N6 H6 295.4 359.9
C16 S1 N6 H7 60.6 179.8
N6 S1 C16 O2 119.6 247.4
N6 S1 C16 O3 240.3 112.6
O2 S1 C16 O3 120.7 225.2
C15 C16 S1 C17 180.7 180.3
S1 C16 C15 C14 180.3 180.0
S1 C16 C15 H15 0.2 359.9
S1 C16 C17 C18 180.6 179.8
S1 C16 C17 H17 0.6 0.3
S1 C16 C15 C17 179.2 179.7
C15 C16 C17 C18 359.9 359.5
C15 C16 C17 H17 179.9 179.9
C14 C15 C16 H15 180.0 180.1
C16 C15 C14 C13 357.1 359.9
C16 C15 C14 H14 177.1 180.0
S1 C16 C17 C15 180.7 180.3
C17 C16 C15 C14 1.0 0.4
C17 C16 C15 H15 181.0 180.2
C18 C17 C16 H17 180.0 179.5
C16 C17 C18 C13 1.2 0.5
C16 C17 C18 H18 181.2 180.3
C14 C15 C16 C17 1.0 0.4
C16 C15 C14 H15 180.0 179.9
C18 C13 C14 C15 4.0 0.0
C13 C14 C15 H14 180.0 179.9
C15 C14 C13 N5 176.2 180.1
H15 C15 C16 C17 181.0 180.2
C16 C15 H15 C14 180.0 180.1
H15 C15 C14 C13 177.1 180.0
H15 C15 C14 H14 357.1 0.1
C16 C17 C18 H17 180.0 180.5
C13 C18 C17 H18 180.0 180.1
C17 C18 C13 C14 356.9 359.8
C17 C18 C13 N5 184.9 179.8
C16 C17 H17 C18 180.0 179.5
H17 C17 C18 C13 181.2 180.0
H17 C17 C18 H18 1.2 359.8
C15 C14 C13 C18 4.0 0.0
C13 C18 C17 H17 181.2 180.0
C17 C18 C13 H18 180.0 179.9
C18 C13 C14 H14 183.9 180.0
C14 C13 C18 N5 172.1 180.0
C18 C13 N5 C9 322.6 173.0
C18 C13 N5 H5 142.7 353.0
H18 C18 C17 H17 1.2 359.8
C17 C18 H18 C13 180.0 180.1
H18 C18 C13 C14 176.9 179.9
H18 C18 C13 N5 4.9 359.9
C13 C14 C15 H15 177.1 180.0
C15 C14 C13 H14 180.0 180.1
C14 C13 C18 H18 176.9 179.9
C18 C13 C14 N5 187.8 180.0
C14 C13 N5 C9 150.5 353.0
C14 C13 N5 H5 330.6 173.0
H14 C14 C15 H15 357.1 0.1
C15 C14 H14 C13 180.0 179.9
H14 C14 C13 N5 356.2 360.0
N5 C13 C18 H18 4.9 359.9
C18 C13 N5 C14 172.1 180.0
N5 C13 C14 H14 356.2 360.0
C9 N5 C13 H5 180.0 180.0
C13 N5 C9 N2 164.5 301.7
C13 N5 C9 C8 340.3 122.0
C13 N5 C9 H5 180.0 180.0
N2 C9 N5 C8 184.2 179.7
N5 C9 N2 C10 178.6 179.7
N5 C9 N2 N3 357.3 0.7
N5 C9 C8 C7 180.2 180.0
N5 C9 C8 H8 0.2 360.0
C13 N5 H5 C9 180.0 180.0
H5 N5 C9 N2 344.5 121.7
H5 N5 C9 C8 160.3 302.0
N2 C9 N5 H5 344.5 121.7
N5 C9 N2 C8 176.0 180.3
N2 C9 C8 C7 356.0 0.3
N2 C9 C8 H8 176.0 180.2
C10 N2 C9 N3 181.3 179.0
C9 N2 C10 N1 0.8 0.5
C9 N2 C10 N4 176.7 180.3
C9 N2 N3 C11 183.7 179.5
C8 C9 N5 H5 160.3 302.0
N5 C9 C8 N2 184.2 179.7
C8 C9 N2 C10 2.6 359.5
C8 C9 N2 N3 181.2 180.4
N1 C7 C8 C9 2.2 359.9
C7 C8 C9 H8 180.0 180.1
C9 C8 C7 O1 179.0 180.0
C10 N2 C9 C8 2.6 359.5
C9 N2 C10 N3 178.9 180.7
C10 N2 N3 C11 2.5 0.4
N1 C10 N2 N4 184.1 180.2
N2 C10 N1 C7 357.3 359.7
N2 C10 N4 C11 1.0 0.3
N3 N2 C9 C8 181.2 180.4
C9 N2 N3 C10 181.2 179.1
N3 N2 C10 N1 181.9 179.8
N3 N2 C10 N4 357.8 359.6
N4 C11 N3 N2 358.1 359.8
N2 N3 C11 H11 178.1 179.8
N1 C10 N2 N3 181.9 179.8
N2 C10 N1 N4 175.0 179.7
N1 C10 N4 C11 176.5 180.0
C10 N1 C7 C8 1.1 0.1
C10 N1 C7 O1 184.1 180.0
N4 C10 N2 N3 357.8 359.6
N2 C10 N4 N1 184.5 180.2
N4 C10 N1 C7 182.3 180.0
C10 N4 C11 N3 0.5 360.0
C10 N4 C11 H11 180.5 180.0
C9 C8 C7 N1 2.2 359.9
C7 N1 C10 N4 182.3 180.0
N1 C7 C8 H8 182.2 180.0
C8 C7 N1 O1 177.0 180.1
N1 C7 O1 C1 189.2 0.1
N2 N3 C11 N4 358.1 359.8
N3 C11 N4 H11 180.0 180.0
N4 C11 N3 H11 180.0 180.0
N4 C11 H11 N3 180.0 180.0
C9 C8 C7 H8 180.0 179.9
N1 C7 C8 O1 183.2 179.9
C8 C7 O1 C1 12.4 180.0
C9 C8 H8 C7 180.0 180.1
H8 C8 C7 O1 359.0 0.1
N1 C7 O1 C8 176.8 180.1
O1 C7 C8 H8 359.0 0.1
C7 O1 C1 C2 258.7 150.0
C7 O1 C1 C6 141.3 270.0
C7 O1 C1 H1 20.3 30.0
C2 C1 O1 C6 117.4 240.0
C2 C1 O1 H1 238.4 120.0
O1 C1 C2 C3 186.2 180.0
O1 C1 C2 H2C1 60.9 299.9
O1 C1 C2 H2C2 311.5 60.0
C6 C1 O1 H1 121.0 240.0
O1 C1 C6 C5 174.5 180.0
O1 C1 C6 H6C1 49.2 300.0
O1 C1 C6 H6C2 299.7 60.1
O1 C1 C2 C6 243.8 119.9
O1 C1 C2 H1 121.6 240.0
C6 C1 C2 H1 237.8 120.1
C2 C1 C6 C5 57.7 300.0
C2 C1 C6 H6C1 292.4 59.9
C2 C1 C6 H6C2 182.9 180.0
C3 C2 C1 H2C1 125.3 240.0
C3 C2 C1 H2C2 234.7 120.0
C1 C2 C3 C4 59.8 300.0
C1 C2 C3 H3C1 294.6 60.1
C1 C2 C3 H3C2 185.1 180.0
H2C1 C2 C1 H2C2 109.5 240.0
O1 C1 C6 C2 116.9 240.1
O1 C1 C6 H1 239.0 120.0
C2 C1 C6 H1 122.2 239.9
C6 C1 C2 C3 302.4 60.0
C6 C1 C2 H2C1 177.1 180.0
C6 C1 C2 H2C2 67.6 300.0
C4 C5 C6 C1 300.7 60.0
C1 C6 C5 H5C1 175.4 300.1
C1 C6 C5 H5C2 65.9 180.0
C5 C6 C1 H6C1 125.3 240.0
C5 C6 C1 H6C2 234.8 119.9
H6C1 C6 C1 H6C2 109.5 239.9
O1 C1 H1 C2 239.9 119.9
O1 C1 H1 C6 118.8 240.0
C2 C1 H1 C6 238.9 120.1
H1 C1 C2 C3 64.5 299.9
H1 C1 C2 H2C1 299.3 59.9
H1 C1 C2 H2C2 189.8 180.0
H1 C1 C6 C5 295.5 60.0
H1 C1 C6 H6C1 170.2 180.0
H1 C1 C6 H6C2 60.7 300.1
C3 C2 C1 C6 302.4 60.0
C3 C2 C1 H1 64.5 299.9
C1 C2 C3 H2C1 234.7 120.0
C1 C2 C3 H2C2 125.3 240.0
H2C1 C2 C3 H2C2 250.6 120.1
C4 C3 C2 H3C1 125.3 240.0
C4 C3 C2 H3C2 234.7 120.1
C2 C3 C4 C5 299.6 60.0
C2 C3 C4 H4C1 174.4 180.1
C2 C3 C4 H4C2 64.9 300.0
H3C1 C3 C2 H3C2 109.5 240.1
H2C1 C2 C1 C6 177.1 180.0
H2C1 C2 C1 H1 299.3 59.9
C1 C2 H2C1 C3 124.5 240.1
C1 C2 H2C1 H2C2 242.3 120.0
C3 C2 H2C1 H2C2 117.7 240.0
H2C1 C2 C3 C4 185.1 180.1
H2C1 C2 C3 H3C1 59.9 300.1
H2C1 C2 C3 H3C2 310.4 60.0
H2C2 C2 C1 C6 67.6 300.0
H2C2 C2 C1 H1 189.8 180.0
C1 C2 H2C2 C3 235.5 119.9
C1 C2 H2C2 H2C1 117.8 240.0
C3 C2 H2C2 H2C1 242.3 120.0
H2C2 C2 C3 C4 294.6 60.0
H2C2 C2 C3 H3C1 169.3 180.0
H2C2 C2 C3 H3C2 59.9 299.9
C4 C3 C2 H2C1 185.1 180.1
C4 C3 C2 H2C2 294.6 60.0
C2 C3 C4 H3C1 234.7 120.0
C2 C3 C4 H3C2 125.3 239.9
H3C1 C3 C4 H3C2 250.5 119.9
C5 C4 C3 H4C1 125.3 239.9
C5 C4 C3 H4C2 234.7 120.0
C3 C4 C5 C6 60.0 300.1
C3 C4 C5 H5C1 185.2 60.0
C3 C4 C5 H5C2 294.7 180.0
H4C1 C4 C3 H4C2 109.5 240.1
H3C1 C3 C2 H2C1 59.9 300.1
H3C1 C3 C2 H2C2 169.3 180.0
C2 C3 H3C1 C4 124.0 240.0
C2 C3 H3C1 H3C2 242.0 119.9
C4 C3 H3C1 H3C2 118.1 240.0
H3C1 C3 C4 C5 64.9 300.0
H3C1 C3 C4 H4C1 299.6 60.1
H3C1 C3 C4 H4C2 190.2 180.0
H3C2 C3 C2 H2C1 310.4 60.0
H3C2 C3 C2 H2C2 59.9 299.9
C2 C3 H3C2 C4 236.0 120.1
C2 C3 H3C2 H3C1 118.0 240.1
C4 C3 H3C2 H3C1 242.0 120.0
H3C2 C3 C4 C5 174.4 180.0
H3C2 C3 C4 H4C1 49.1 300.1
H3C2 C3 C4 H4C2 299.7 60.0
C1 C6 C5 C4 300.7 60.0
C5 C4 C3 H3C1 64.9 300.0
C5 C4 C3 H3C2 174.4 180.0
C3 C4 C5 H4C1 234.7 120.1
C3 C4 C5 H4C2 125.3 240.0
H4C1 C4 C5 H4C2 250.5 120.0
C6 C5 C4 H5C1 234.8 240.0
C6 C5 C4 H5C2 125.3 120.0
C4 C5 C6 H6C1 66.0 300.0
C4 C5 C6 H6C2 175.4 180.0
H5C1 C5 C4 H5C2 250.5 240.0
H4C1 C4 C3 H3C1 299.6 60.1
H4C1 C4 C3 H3C2 49.1 300.1
C3 C4 H4C1 C5 123.5 239.9
C3 C4 H4C1 H4C2 241.8 119.9
C5 C4 H4C1 H4C2 118.3 240.0
H4C1 C4 C5 C6 185.2 180.0
H4C1 C4 C5 H5C1 310.5 300.0
H4C1 C4 C5 H5C2 60.0 59.9
H4C2 C4 C3 H3C1 190.2 180.0
H4C2 C4 C3 H3C2 299.7 60.0
C3 C4 H4C2 C5 236.5 120.0
C3 C4 H4C2 H4C1 118.3 240.0
C5 C4 H4C2 H4C1 241.8 120.0
H4C2 C4 C5 C6 294.7 60.0
H4C2 C4 C5 H5C1 59.9 180.0
H4C2 C4 C5 H5C2 169.4 300.0
C5 C6 C1 H1 295.5 60.0
C1 C6 C5 H6C1 234.7 120.0
C1 C6 C5 H6C2 125.2 240.0
C6 C5 C4 H4C1 185.2 180.0
C6 C5 C4 H4C2 294.7 60.0
C4 C5 C6 H5C1 125.3 119.9
C4 C5 C6 H5C2 234.8 240.0
H5C1 C5 C6 H5C2 109.5 120.1
H6C1 C6 C5 H6C2 250.5 120.0
H5C1 C5 C4 H4C1 310.5 300.0
H5C1 C5 C4 H4C2 59.9 180.0
C4 C5 H5C1 C6 236.2 240.0
C4 C5 H5C1 H5C2 118.1 120.0
C6 C5 H5C1 H5C2 241.9 239.9
H5C1 C5 C6 H6C1 300.7 180.0
H5C1 C5 C6 H6C2 50.2 60.1
H5C2 C5 C4 H4C1 60.0 59.9
H5C2 C5 C4 H4C2 169.4 300.0
C4 C5 H5C2 C6 123.8 120.0
C4 C5 H5C2 H5C1 241.9 240.1
C6 C5 H5C2 H5C1 118.1 120.1
H5C2 C5 C6 H6C1 191.2 60.0
H5C2 C5 C6 H6C2 300.7 300.0
H6C1 C6 C1 H1 170.2 180.0
C1 C6 H6C1 C5 124.9 240.0
C1 C6 H6C1 H6C2 242.5 120.1
H6C1 C6 C5 H5C1 300.7 180.0
H6C1 C6 C5 H5C2 191.2 60.0
C5 C6 H6C1 H6C2 117.5 240.1
H6C2 C6 C1 H1 60.7 300.1
C1 C6 H6C2 C5 235.1 120.0
C1 C6 H6C2 H6C1 117.6 239.9
H6C2 C6 C5 H5C1 50.2 60.1
H6C2 C6 C5 H5C2 300.7 300.0
C5 C6 H6C2 H6C1 242.5 119.9