PDB Chemical Component DT1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DT1

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O3 S1 1.472 1.421
S1 O2 1.460 1.422
S1 N6 1.605 1.656
S1 C16 1.717 1.762
N6 H6N1 1.020 0.970
N6 H6N2 1.020 0.970
C16 C15 1.389 1.383
C16 C17 1.400 1.382
C15 C14 1.402 1.381
C15 H15 1.104 1.080
C17 C18 1.392 1.381
C17 H17 1.104 1.081
C18 C13 1.412 1.390
C18 H18 1.103 1.079
C14 C13 1.405 1.390
C14 H14 1.104 1.080
C13 N5 1.372 1.397
N5 C9 1.375 1.379
N5 H5 1.020 0.970
C9 N2 1.362 1.367
C9 C8 1.402 1.368
N2 C10 1.343 1.367
N2 N3 1.321 1.401
C10 N1 1.343 1.337
C10 N4 1.347 1.328
N1 C7 1.377 1.322
N4 C11 1.357 1.328
C11 N3 1.348 1.310
C11 H11 1.103 1.080
C8 C7 1.399 1.400
C8 H8 1.103 1.080
C7 O1 1.364 1.355
C20 O1 1.430 1.428
C20 C1 1.538 1.530
C20 H201 1.115 1.090
C20 H202 1.115 1.090
C1 C2 1.534 1.530
C1 C6 1.531 1.530
C1 H1 1.115 1.091
C2 C3 1.534 1.529
C2 H2C1 1.115 1.090
C2 H2C2 1.115 1.090
C3 C4 1.535 1.530
C3 H3C1 1.115 1.090
C3 H3C2 1.115 1.090
C4 C5 1.530 1.530
C4 H4C1 1.115 1.091
C4 H4C2 1.115 1.090
C5 C6 1.528 1.530
C5 H5C1 1.115 1.089
C5 H5C2 1.115 1.089
C6 H6C1 1.115 1.089
C6 H6C2 1.115 1.090

Bond Angles for DT1

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O3 S1 O2 107.0 125.4
O3 S1 N6 108.9 105.7
O3 S1 C16 110.6 105.8
O2 S1 N6 114.1 105.7
O2 S1 C16 105.2 105.8
N6 S1 C16 110.9 107.4
S1 N6 H6N1 108.9 120.0
S1 N6 H6N2 114.1 120.0
S1 C16 C15 119.7 119.9
S1 C16 C17 116.7 120.0
H6N1 N6 H6N2 107.0 120.0
C15 C16 C17 123.6 120.1
C16 C15 C14 119.5 120.1
C16 C15 H15 120.2 120.0
C16 C17 C18 116.2 120.1
C16 C17 H17 121.9 119.9
C14 C15 H15 120.2 120.0
C15 C14 C13 118.5 120.0
C15 C14 H14 120.8 120.1
C18 C17 H17 121.9 119.9
C17 C18 C13 121.8 119.9
C17 C18 H18 119.1 120.1
C13 C18 H18 119.1 120.0
C18 C13 C14 120.3 119.8
C18 C13 N5 121.1 120.1
C13 C14 H14 120.8 120.0
C14 C13 N5 118.5 120.1
C13 N5 C9 125.5 120.0
C13 N5 H5 117.3 120.1
C9 N5 H5 117.2 120.0
N5 C9 N2 120.9 120.6
N5 C9 C8 122.0 120.5
N2 C9 C8 117.1 118.9
C9 N2 C10 123.4 120.3
C9 N2 N3 128.4 133.2
C9 C8 C7 118.3 119.1
C9 C8 H8 120.9 120.4
C10 N2 N3 108.2 106.4
N2 C10 N1 121.4 120.4
N2 C10 N4 109.9 107.2
N2 N3 C11 107.3 107.0
N1 C10 N4 128.7 132.5
C10 N1 C7 117.8 121.0
C10 N4 C11 104.7 109.7
N1 C7 C8 121.9 120.3
N1 C7 O1 118.8 119.9
N4 C11 N3 109.9 109.6
N4 C11 H11 125.0 125.2
N3 C11 H11 125.1 125.2
C7 C8 H8 120.8 120.5
C8 C7 O1 119.2 119.8
C7 O1 C20 109.9 106.8
O1 C20 C1 108.7 109.5
O1 C20 H201 112.5 109.5
O1 C20 H202 112.5 109.5
C1 C20 H201 112.5 109.5
C1 C20 H202 112.5 109.4
C20 C1 C2 114.5 109.5
C20 C1 C6 109.8 109.5
C20 C1 H1 107.5 109.5
H201 C20 H202 97.9 109.5
C2 C1 C6 109.9 109.5
C2 C1 H1 107.5 109.4
C1 C2 C3 109.4 109.5
C1 C2 H2C1 112.3 109.4
C1 C2 H2C2 112.2 109.4
C6 C1 H1 107.5 109.5
C1 C6 C5 109.2 109.5
C1 C6 H6C1 112.3 109.4
C1 C6 H6C2 112.3 109.4
C3 C2 H2C1 112.3 109.5
C3 C2 H2C2 112.2 109.5
C2 C3 C4 110.0 109.5
C2 C3 H3C1 112.0 109.5
C2 C3 H3C2 112.0 109.5
H2C1 C2 H2C2 98.2 109.5
C4 C3 H3C1 112.0 109.5
C4 C3 H3C2 112.0 109.5
C3 C4 C5 109.8 109.5
C3 C4 H4C1 112.1 109.4
C3 C4 H4C2 112.1 109.5
H3C1 C3 H3C2 98.4 109.4
C5 C4 H4C1 112.1 109.5
C5 C4 H4C2 112.1 109.5
C4 C5 C6 108.8 109.4
C4 C5 H5C1 112.4 109.5
C4 C5 H5C2 112.4 109.5
H4C1 C4 H4C2 98.3 109.5
C6 C5 H5C1 112.5 109.5
C6 C5 H5C2 112.4 109.4
C5 C6 H6C1 112.3 109.5
C5 C6 H6C2 112.3 109.5
H5C1 C5 H5C2 98.0 109.5
H6C1 C6 H6C2 98.1 109.6

Torsion Angles for DT1

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2 S1 O3 N6 236.2 236.9
O2 S1 O3 C16 114.1 123.2
N6 S1 O3 C16 237.9 246.3
O3 S1 N6 H6N1 180.0 352.6
O3 S1 N6 H6N2 60.5 172.3
O3 S1 C16 C15 110.1 337.4
O3 S1 C16 C17 288.6 157.1
O3 S1 O2 N6 120.6 123.1
O3 S1 O2 C16 242.3 236.8
N6 S1 O2 C16 121.8 113.7
O2 S1 N6 H6N1 299.5 127.4
O2 S1 N6 H6N2 180.0 307.1
O2 S1 C16 C15 354.9 202.6
O2 S1 C16 C17 173.3 22.3
O3 S1 N6 O2 240.5 225.2
O3 S1 N6 C16 122.0 112.6
O2 S1 N6 C16 241.4 247.4
N6 S1 C16 C15 231.1 90.0
N6 S1 C16 C17 49.5 269.7
H6N1 N6 S1 H6N2 119.4 180.3
O3 S1 C16 O2 115.2 134.9
O3 S1 C16 N6 239.0 247.4
O2 S1 C16 N6 123.8 112.5
C16 S1 N6 H6N1 58.0 240.0
C16 S1 N6 H6N2 298.6 59.7
C15 C16 S1 C17 181.6 180.3
S1 C16 C15 C14 180.2 180.0
S1 C16 C15 H15 0.2 360.0
S1 C16 C17 C18 179.5 179.8
S1 C16 C17 H17 359.5 0.2
H6N1 N6 S1 C16 58.0 240.0
S1 N6 H6N1 H6N2 236.2 179.7
H6N2 N6 S1 C16 298.6 59.7
S1 N6 H6N2 H6N1 120.5 180.3
S1 C16 C15 C17 178.3 179.7
C15 C16 C17 C18 357.9 359.5
C15 C16 C17 H17 177.9 179.9
C14 C15 C16 H15 180.0 180.0
C16 C15 C14 C13 359.1 0.0
C16 C15 C14 H14 179.0 179.9
S1 C16 C17 C15 181.6 180.3
C17 C16 C15 C14 1.8 0.3
C17 C16 C15 H15 181.8 180.3
C18 C17 C16 H17 180.0 179.5
C16 C17 C18 C13 1.6 0.5
C16 C17 C18 H18 181.6 180.3
C14 C15 C16 C17 1.8 0.3
C16 C15 C14 H15 180.0 180.0
C18 C13 C14 C15 0.5 360.0
C13 C14 C15 H14 180.0 180.1
C15 C14 C13 N5 179.5 180.0
H15 C15 C16 C17 181.8 180.3
C16 C15 H15 C14 180.0 180.0
H15 C15 C14 C13 179.1 180.0
H15 C15 C14 H14 359.0 359.9
C16 C17 C18 H17 180.0 180.5
C13 C18 C17 H18 180.0 180.2
C17 C18 C13 C14 359.2 359.8
C17 C18 C13 N5 180.1 179.7
C16 C17 H17 C18 180.0 179.5
H17 C17 C18 C13 181.6 180.0
H17 C17 C18 H18 1.6 359.8
C15 C14 C13 C18 0.5 360.0
C13 C18 C17 H17 181.6 180.0
C17 C18 C13 H18 180.0 179.8
C18 C13 C14 H14 180.5 180.0
C14 C13 C18 N5 179.0 180.1
C18 C13 N5 C9 332.4 173.0
C18 C13 N5 H5 152.5 353.0
H18 C18 C17 H17 1.6 359.8
C17 C18 H18 C13 180.0 180.2
H18 C18 C13 C14 179.2 180.0
H18 C18 C13 N5 0.1 360.0
C13 C14 C15 H15 179.1 180.0
C15 C14 C13 H14 180.0 179.9
C14 C13 C18 H18 179.2 180.0
C18 C13 C14 N5 180.9 179.9
C14 C13 N5 C9 153.4 352.9
C14 C13 N5 H5 333.4 172.9
H14 C14 C15 H15 359.0 359.9
C15 C14 H14 C13 180.0 180.1
H14 C14 C13 N5 359.5 0.1
N5 C13 C18 H18 0.1 360.0
C18 C13 N5 C14 179.1 180.1
N5 C13 C14 H14 359.5 0.1
C9 N5 C13 H5 180.0 180.0
C13 N5 C9 N2 157.8 301.7
C13 N5 C9 C8 333.8 122.0
C13 N5 C9 H5 180.0 180.0
N2 C9 N5 C8 184.0 179.7
N5 C9 N2 C10 179.6 179.7
N5 C9 N2 N3 357.7 0.8
N5 C9 C8 C7 179.9 180.0
N5 C9 C8 H8 359.9 359.9
C13 N5 H5 C9 180.0 180.0
H5 N5 C9 N2 337.8 121.7
H5 N5 C9 C8 153.7 302.0
N2 C9 N5 H5 337.8 121.7
N5 C9 N2 C8 176.2 180.3
N2 C9 C8 C7 356.0 0.3
N2 C9 C8 H8 176.0 180.3
C10 N2 C9 N3 181.9 178.9
C9 N2 C10 N1 359.1 0.6
C9 N2 C10 N4 177.5 180.4
C9 N2 N3 C11 183.1 179.4
C8 C9 N5 H5 153.7 302.0
N5 C9 C8 N2 183.9 179.7
C8 C9 N2 C10 3.5 359.4
C8 C9 N2 N3 181.6 180.5
N1 C7 C8 C9 2.3 360.0
C7 C8 C9 H8 180.0 180.1
C9 C8 C7 O1 181.1 180.0
C10 N2 C9 C8 3.5 359.4
C9 N2 C10 N3 178.5 180.8
C10 N2 N3 C11 1.5 0.4
N1 C10 N2 N4 181.6 180.2
N2 C10 N1 C7 358.9 359.7
N2 C10 N4 C11 360.0 0.3
N3 N2 C9 C8 181.6 180.5
C9 N2 N3 C10 181.6 179.0
N3 N2 C10 N1 180.6 179.8
N3 N2 C10 N4 359.1 359.6
N4 C11 N3 N2 358.5 359.8
N2 N3 C11 H11 178.5 179.7
N1 C10 N2 N3 180.6 179.8
N2 C10 N1 N4 178.1 179.7
N1 C10 N4 C11 178.3 180.0
C10 N1 C7 C8 0.3 0.0
C10 N1 C7 O1 181.4 180.0
N4 C10 N2 N3 359.1 359.6
N2 C10 N4 N1 181.7 180.3
N4 C10 N1 C7 180.8 180.0
C10 N4 C11 N3 0.9 360.0
C10 N4 C11 H11 180.9 180.0
C9 C8 C7 N1 2.3 360.0
C7 N1 C10 N4 180.8 180.0
N1 C7 C8 H8 182.3 180.1
C8 C7 N1 O1 178.9 180.0
N1 C7 O1 C20 285.7 360.0
N2 N3 C11 N4 358.5 359.8
N3 C11 N4 H11 180.0 180.0
N4 C11 N3 H11 180.0 180.0
N4 C11 H11 N3 180.0 180.0
C9 C8 C7 H8 180.0 179.9
N1 C7 C8 O1 181.1 180.0
C8 C7 O1 C20 106.8 180.0
C9 C8 H8 C7 180.0 180.1
H8 C8 C7 O1 1.2 0.0
N1 C7 O1 C8 178.9 180.0
O1 C7 C8 H8 1.2 0.0
C7 O1 C20 C1 201.1 180.0
C7 O1 C20 H201 75.8 300.0
C7 O1 C20 H202 326.3 60.1
C1 C20 O1 H201 125.3 240.0
C1 C20 O1 H202 234.7 119.9
O1 C20 C1 C2 322.4 175.0
O1 C20 C1 C6 198.3 295.0
O1 C20 C1 H1 81.7 55.0
H201 C20 O1 H202 109.5 240.0
O1 C20 C1 H201 234.7 120.0
O1 C20 C1 H202 125.3 240.0
H201 C20 C1 H202 250.5 120.0
C2 C1 C20 C6 124.1 240.0
C2 C1 C20 H1 240.7 120.0
C20 C1 C2 C3 176.9 180.0
C20 C1 C2 H2C1 51.6 300.0
C20 C1 C2 H2C2 302.2 60.0
C6 C1 C20 H1 116.6 240.0
C20 C1 C6 C5 187.8 180.0
C20 C1 C6 H6C1 62.5 300.0
C20 C1 C6 H6C2 313.1 60.0
O1 C20 H201 C1 123.1 240.0
O1 C20 H201 H202 241.6 120.1
C1 C20 H201 H202 118.4 240.1
H201 C20 C1 C2 87.7 54.9
H201 C20 C1 C6 323.5 175.0
H201 C20 C1 H1 206.9 295.0
O1 C20 H202 C1 236.9 120.0
O1 C20 H202 H201 118.4 239.9
C1 C20 H202 H201 241.6 120.0
H202 C20 C1 C2 197.2 295.0
H202 C20 C1 C6 73.0 55.0
H202 C20 C1 H1 316.4 175.0
C2 C1 C20 H201 87.7 54.9
C2 C1 C20 H202 197.2 295.0
C20 C1 C2 C6 235.9 120.0
C20 C1 C2 H1 119.3 240.0
C6 C1 C2 H1 243.3 120.0
C2 C1 C6 C5 61.0 300.0
C2 C1 C6 H6C1 295.8 60.0
C2 C1 C6 H6C2 186.3 180.1
C3 C2 C1 H2C1 125.3 240.0
C3 C2 C1 H2C2 234.8 120.0
C1 C2 C3 C4 58.0 300.0
C1 C2 C3 H3C1 292.7 60.1
C1 C2 C3 H3C2 183.2 180.0
H2C1 C2 C1 H2C2 109.5 240.0
C6 C1 C20 H201 323.5 175.0
C6 C1 C20 H202 73.0 55.0
C20 C1 C6 C2 126.8 240.0
C20 C1 C6 H1 243.4 120.0
C2 C1 C6 H1 116.7 240.0
C6 C1 C2 C3 301.0 60.0
C6 C1 C2 H2C1 175.7 180.0
C6 C1 C2 H2C2 66.2 300.0
C4 C5 C6 C1 298.6 60.0
C1 C6 C5 H5C1 173.4 300.0
C1 C6 C5 H5C2 63.9 180.0
C5 C6 C1 H6C1 125.2 240.0
C5 C6 C1 H6C2 234.7 119.9
H6C1 C6 C1 H6C2 109.5 239.9
H1 C1 C20 H201 206.9 295.0
H1 C1 C20 H202 316.4 175.0
C20 C1 H1 C2 236.3 120.0
C20 C1 H1 C6 118.1 240.0
C2 C1 H1 C6 241.8 120.0
H1 C1 C2 C3 57.6 300.0
H1 C1 C2 H2C1 292.3 60.0
H1 C1 C2 H2C2 182.9 180.0
H1 C1 C6 C5 304.4 60.0
H1 C1 C6 H6C1 179.1 180.0
H1 C1 C6 H6C2 69.7 300.0
C3 C2 C1 C6 301.0 60.0
C3 C2 C1 H1 57.6 300.0
C1 C2 C3 H2C1 234.7 120.0
C1 C2 C3 H2C2 125.2 240.1
H2C1 C2 C3 H2C2 250.5 120.1
C4 C3 C2 H3C1 125.3 240.0
C4 C3 C2 H3C2 234.8 120.0
C2 C3 C4 C5 300.8 60.0
C2 C3 C4 H4C1 175.5 180.0
C2 C3 C4 H4C2 66.0 300.0
H3C1 C3 C2 H3C2 109.5 240.1
H2C1 C2 C1 C6 175.7 180.0
H2C1 C2 C1 H1 292.3 60.0
C1 C2 H2C1 C3 123.7 240.0
C1 C2 H2C1 H2C2 241.8 119.9
C3 C2 H2C1 H2C2 118.2 239.9
H2C1 C2 C3 C4 183.3 180.0
H2C1 C2 C3 H3C1 58.0 300.1
H2C1 C2 C3 H3C2 308.5 60.0
H2C2 C2 C1 C6 66.2 300.0
H2C2 C2 C1 H1 182.9 180.0
C1 C2 H2C2 C3 236.4 120.0
C1 C2 H2C2 H2C1 118.2 240.1
C3 C2 H2C2 H2C1 241.8 120.1
H2C2 C2 C3 C4 292.7 60.0
H2C2 C2 C3 H3C1 167.5 180.0
H2C2 C2 C3 H3C2 58.0 299.9
C4 C3 C2 H2C1 183.3 180.0
C4 C3 C2 H2C2 292.7 60.0
C2 C3 C4 H3C1 234.7 120.1
C2 C3 C4 H3C2 125.2 240.0
H3C1 C3 C4 H3C2 250.5 119.9
C5 C4 C3 H4C1 125.3 240.0
C5 C4 C3 H4C2 234.7 120.0
C3 C4 C5 C6 60.6 300.0
C3 C4 C5 H5C1 185.9 60.0
C3 C4 C5 H5C2 295.4 180.0
H4C1 C4 C3 H4C2 109.5 240.0
H3C1 C3 C2 H2C1 58.0 300.1
H3C1 C3 C2 H2C2 167.5 180.0
C2 C3 H3C1 C4 124.2 240.0
C2 C3 H3C1 H3C2 242.1 120.0
C4 C3 H3C1 H3C2 117.9 240.0
H3C1 C3 C4 C5 66.0 300.0
H3C1 C3 C4 H4C1 300.8 60.0
H3C1 C3 C4 H4C2 191.3 179.9
H3C2 C3 C2 H2C1 308.5 60.0
H3C2 C3 C2 H2C2 58.0 299.9
C2 C3 H3C2 C4 235.8 120.0
C2 C3 H3C2 H3C1 117.9 240.0
C4 C3 H3C2 H3C1 242.1 120.0
H3C2 C3 C4 C5 175.5 180.0
H3C2 C3 C4 H4C1 50.3 300.0
H3C2 C3 C4 H4C2 300.8 60.0
C1 C6 C5 C4 298.6 60.0
C5 C4 C3 H3C1 66.0 300.0
C5 C4 C3 H3C2 175.5 180.0
C3 C4 C5 H4C1 234.7 120.0
C3 C4 C5 H4C2 125.3 240.0
H4C1 C4 C5 H4C2 250.5 120.0
C6 C5 C4 H5C1 234.7 240.0
C6 C5 C4 H5C2 125.3 119.9
C4 C5 C6 H6C1 63.9 300.0
C4 C5 C6 H6C2 173.3 179.9
H5C1 C5 C4 H5C2 250.5 239.9
H4C1 C4 C3 H3C1 300.8 60.0
H4C1 C4 C3 H3C2 50.3 300.0
C3 C4 H4C1 C5 124.0 240.0
C3 C4 H4C1 H4C2 242.0 120.0
C5 C4 H4C1 H4C2 118.0 240.0
H4C1 C4 C5 C6 185.9 180.0
H4C1 C4 C5 H5C1 311.1 300.0
H4C1 C4 C5 H5C2 60.6 60.1
H4C2 C4 C3 H3C1 191.3 179.9
H4C2 C4 C3 H3C2 300.8 60.0
C3 C4 H4C2 C5 236.0 120.0
C3 C4 H4C2 H4C1 118.0 240.0
C5 C4 H4C2 H4C1 242.0 120.0
H4C2 C4 C5 C6 295.3 60.0
H4C2 C4 C5 H5C1 60.6 180.0
H4C2 C4 C5 H5C2 170.1 300.1
C5 C6 C1 H1 304.4 60.0
C1 C6 C5 H6C1 234.8 120.0
C1 C6 C5 H6C2 125.3 240.1
C6 C5 C4 H4C1 185.9 180.0
C6 C5 C4 H4C2 295.3 60.0
C4 C5 C6 H5C1 125.3 120.0
C4 C5 C6 H5C2 234.8 240.0
H5C1 C5 C6 H5C2 109.5 120.0
H6C1 C6 C5 H6C2 250.5 120.1
H5C1 C5 C4 H4C1 311.1 300.0
H5C1 C5 C4 H4C2 60.6 180.0
C4 C5 H5C1 C6 236.7 240.0
C4 C5 H5C1 H5C2 118.3 120.0
C6 C5 H5C1 H5C2 241.6 240.0
H5C1 C5 C6 H6C1 298.6 180.0
H5C1 C5 C6 H6C2 48.1 59.9
H5C2 C5 C4 H4C1 60.6 60.1
H5C2 C5 C4 H4C2 170.1 300.1
C4 C5 H5C2 C6 123.2 119.9
C4 C5 H5C2 H5C1 241.7 240.0
C6 C5 H5C2 H5C1 118.4 120.0
H5C2 C5 C6 H6C1 189.1 60.0
H5C2 C5 C6 H6C2 298.6 299.9
H6C1 C6 C1 H1 179.1 180.0
C1 C6 H6C1 C5 123.5 240.0
C1 C6 H6C1 H6C2 241.8 120.0
H6C1 C6 C5 H5C1 298.6 180.0
H6C1 C6 C5 H5C2 189.1 60.0
C5 C6 H6C1 H6C2 118.3 239.9
H6C2 C6 C1 H1 69.7 300.0
C1 C6 H6C2 C5 236.5 120.0
C1 C6 H6C2 H6C1 118.2 240.0
H6C2 C6 C5 H5C1 48.1 59.9
H6C2 C6 C5 H5C2 298.6 299.9
C5 C6 H6C2 H6C1 241.8 120.1