PDB Chemical Component DT

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DT

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OP3 P 1.620 1.618
OP3 HOP3 0.950 0.981
P OP1 1.480 1.501
P OP2 1.480 1.616
P O5' 1.615 1.619
OP2 HOP2 0.950 0.981
O5' C5' 1.417 1.418
C5' C4' 1.533 1.523
C5' H5' 1.100 1.092
C5' H5'' 1.100 1.093
C4' O4' 1.420 1.441
C4' C3' 1.534 1.522
C4' H4' 1.100 1.094
O4' C1' 1.414 1.434
C3' O3' 1.418 1.426
C3' C2' 1.527 1.511
C3' H3' 1.100 1.094
O3' HO3' 0.950 0.973
C2' C1' 1.526 1.520
C2' H2' 1.100 1.097
C2' H2'' 1.100 1.095
C1' N1 1.479 1.434
C1' H1' 1.100 1.095
N1 C2 1.395 1.411
N1 C6 1.366 1.389
C2 O2 1.230 1.232
C2 N3 1.386 1.399
N3 C4 1.387 1.387
N3 H3 1.000 1.016
C4 O4 1.229 1.228
C4 C5 1.456 1.487
C5 C7 1.512 1.495
C5 C6 1.356 1.339
C7 H71 1.100 1.089
C7 H72 1.100 1.090
C7 H73 1.100 1.090
C6 H6 1.080 1.086

Bond Angles for DT

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
P OP3 HOP3 109.5 118.9
OP3 P OP1 107.8 115.3
OP3 P OP2 108.5 103.3
OP3 P O5' 103.8 103.7
OP1 P OP2 119.7 115.0
OP1 P O5' 107.9 115.0
OP2 P O5' 108.0 102.9
P OP2 HOP2 109.5 118.9
P O5' C5' 121.5 118.5
O5' C5' C4' 111.2 108.9
O5' C5' H5' 108.9 109.0
O5' C5' H5'' 108.5 108.9
C4' C5' H5' 108.9 110.3
C4' C5' H5'' 108.6 110.3
C5' C4' O4' 108.1 107.9
C5' C4' C3' 111.6 112.9
C5' C4' H4' 108.4 109.5
H5' C5' H5'' 110.8 109.3
O4' C4' C3' 107.8 106.2
O4' C4' H4' 112.2 107.9
C4' O4' C1' 108.2 109.3
C3' C4' H4' 108.8 112.2
C4' C3' O3' 109.0 109.9
C4' C3' C2' 102.2 103.1
C4' C3' H3' 115.6 113.5
O4' C1' C2' 102.6 107.4
O4' C1' N1 109.4 109.3
O4' C1' H1' 114.8 108.0
O3' C3' C2' 112.9 109.7
O3' C3' H3' 105.4 107.4
C3' O3' HO3' 109.5 107.3
C2' C3' H3' 111.9 113.2
C3' C2' C1' 103.2 102.5
C3' C2' H2' 111.6 109.7
C3' C2' H2'' 113.0 114.1
C1' C2' H2' 111.6 110.6
C1' C2' H2'' 112.9 111.7
C2' C1' N1 112.2 112.8
C2' C1' H1' 112.2 111.5
H2' C2' H2'' 104.8 108.3
N1 C1' H1' 105.7 107.8
C1' N1 C2 119.5 121.2
C1' N1 C6 119.1 118.4
C2 N1 C6 121.4 120.4
N1 C2 O2 123.7 123.8
N1 C2 N3 116.1 115.1
N1 C6 C5 121.7 124.5
N1 C6 H6 119.2 114.9
O2 C2 N3 120.2 121.1
C2 N3 C4 125.9 127.0
C2 N3 H3 117.0 116.4
C4 N3 H3 117.0 116.6
N3 C4 O4 119.4 123.6
N3 C4 C5 114.2 114.8
O4 C4 C5 126.4 121.6
C4 C5 C7 120.6 118.1
C4 C5 C6 120.6 118.3
C7 C5 C6 118.8 123.6
C5 C7 H71 109.5 109.7
C5 C7 H72 109.5 109.8
C5 C7 H73 109.4 109.7
C5 C6 H6 119.2 120.7
H71 C7 H72 109.5 109.4
H71 C7 H73 109.5 109.4
H72 C7 H73 109.5 108.9

Torsion Angles for DT

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP3 OP2 131.0 126.3
OP1 P OP3 O5' 245.7 233.4
OP2 P OP3 O5' 114.7 107.1
OP3 P OP2 HOP2 178.8 78.5
OP3 P O5' C5' 303.5 53.2
HOP3 OP3 P OP1 134.5 48.8
HOP3 OP3 P OP2 3.4 282.5
HOP3 OP3 P O5' 248.7 175.4
OP1 P OP3 HOP3 134.5 48.8
OP3 P OP1 OP2 235.4 239.9
OP3 P OP1 O5' 111.6 120.6
OP2 P OP1 O5' 236.1 240.7
OP1 P OP2 HOP2 54.5 312.0
OP1 P O5' C5' 57.7 179.9
OP2 P OP3 HOP3 3.4 282.5
OP3 P OP2 OP1 124.3 126.5
OP3 P OP2 O5' 248.0 252.3
OP1 P OP2 O5' 123.8 125.8
OP2 P O5' C5' 188.4 305.8
O5' P OP3 HOP3 248.7 175.4
OP3 P O5' OP1 245.7 233.2
OP3 P O5' OP2 115.1 107.4
OP1 P O5' OP2 229.3 234.2
O5' P OP2 HOP2 290.7 186.2
P O5' C5' C4' 175.9 180.0
P O5' C5' H5' 295.9 300.4
P O5' C5' H5'' 56.6 59.6
HOP2 OP2 P O5' 290.7 186.2
C4' C5' O5' H5' 240.0 239.6
C4' C5' O5' H5'' 119.3 120.4
O5' C5' C4' O4' 293.5 62.4
O5' C5' C4' C3' 51.8 179.5
O5' C5' C4' H4' 171.6 305.3
H5' C5' O5' H5'' 239.3 240.8
O5' C5' C4' H5' 120.0 119.6
O5' C5' C4' H5'' 240.7 240.5
H5' C5' C4' H5'' 120.7 120.9
O4' C4' C5' C3' 241.6 242.9
O4' C4' C5' H4' 121.8 117.1
C5' C4' O4' C1' 142.4 108.6
C3' C4' C5' H4' 240.2 234.2
C5' C4' C3' O3' 125.7 154.2
C5' C4' C3' C2' 245.4 271.2
C5' C4' C3' H3' 7.2 34.0
O5' C5' H5' C4' 238.6 240.5
O5' C5' H5' H5'' 119.3 119.0
C4' C5' H5' H5'' 240.7 238.5
H5' C5' C4' O4' 173.4 302.9
H5' C5' C4' C3' 291.8 60.0
H5' C5' C4' H4' 51.6 185.7
O5' C5' H5'' C4' 120.9 119.4
O5' C5' H5'' H5' 240.5 241.0
C4' C5' H5'' H5' 119.5 121.5
H5'' C5' C4' O4' 52.8 181.9
H5'' C5' C4' C3' 171.1 299.0
H5'' C5' C4' H4' 290.9 64.8
O4' C4' C5' H5' 173.4 302.9
O4' C4' C5' H5'' 52.8 181.9
C5' C4' O4' C3' 120.8 121.4
C5' C4' O4' H4' 240.5 241.8
C3' C4' O4' H4' 119.7 120.5
O4' C4' C3' O3' 244.2 272.3
O4' C4' C3' C2' 3.9 29.2
O4' C4' C3' H3' 125.7 152.1
C4' O4' C1' C2' 322.1 351.0
C4' O4' C1' N1 202.8 228.3
C4' O4' C1' H1' 84.1 111.3
C3' C4' C5' H5' 291.8 60.0
C3' C4' C5' H5'' 171.1 299.0
C5' C4' C3' O4' 241.4 241.9
C5' C4' C3' H4' 119.6 124.3
O4' C4' C3' H4' 238.2 242.4
C3' C4' O4' C1' 21.6 347.3
O3' C3' C4' C2' 240.3 243.1
O3' C3' C4' H3' 118.5 120.2
C4' C3' O3' HO3' 89.9 232.0
C2' C3' C4' H3' 238.2 237.2
C4' C3' C2' C1' 334.4 326.6
C4' C3' C2' H2' 94.4 84.1
C4' C3' C2' H2'' 212.1 205.7
H4' C4' C5' H5' 51.6 185.7
H4' C4' C5' H5'' 290.9 64.8
C5' C4' H4' O4' 119.3 117.1
C5' C4' H4' C3' 238.5 233.8
O4' C4' H4' C3' 119.1 116.7
H4' C4' O4' C1' 261.9 226.8
H4' C4' C3' O3' 6.1 29.9
H4' C4' C3' C2' 125.8 146.9
H4' C4' C3' H3' 247.6 269.7
C1' O4' C4' C3' 21.6 347.3
C1' O4' C4' H4' 261.9 226.8
C3' C2' C1' O4' 39.1 26.9
O4' C1' C2' H2' 279.1 270.0
O4' C1' C2' H2'' 161.4 149.4
C2' C1' O4' N1 119.4 122.7
C2' C1' O4' H1' 238.0 239.7
N1 C1' O4' H1' 118.7 117.0
O4' C1' N1 C2 234.0 212.8
O4' C1' N1 C6 52.3 32.9
O3' C3' C4' H4' 6.1 29.9
C4' C3' O3' C2' 112.8 112.7
C4' C3' O3' H3' 235.3 236.1
C2' C3' O3' H3' 122.5 123.4
O3' C3' C2' C1' 91.3 83.6
O3' C3' C2' H2' 211.3 201.1
O3' C3' C2' H2'' 329.1 322.8
C2' C3' C4' H4' 125.8 146.9
C4' C3' C2' O3' 243.1 242.9
C4' C3' C2' H3' 124.3 123.0
O4' C1' C2' C3' 39.1 26.9
O3' C3' C2' H3' 241.3 240.1
C2' C3' O3' HO3' 337.1 119.3
C1' C2' C3' H2' 240.0 242.5
C1' C2' C3' H2'' 122.3 120.8
C3' C2' C1' N1 156.5 147.4
C3' C2' C1' H1' 275.3 268.8
H2' C2' C3' H2'' 242.3 238.3
H3' C3' C4' H4' 247.6 269.7
C4' C3' H3' O3' 120.5 121.7
C4' C3' H3' C2' 243.6 242.9
O3' C3' H3' C2' 123.1 121.3
H3' C3' O3' HO3' 214.6 355.9
H3' C3' C2' C1' 210.1 203.6
H3' C3' C2' H2' 330.1 321.1
H3' C3' C2' H2'' 87.8 82.7
HO3' O3' C3' C2' 337.1 119.3
HO3' O3' C3' H3' 214.6 355.9
O4' C1' C2' N1 242.6 239.5
O4' C1' C2' H1' 123.8 118.1
C1' C2' C3' H3' 210.1 203.6
C3' C2' C1' H2' 120.0 116.9
C3' C2' C1' H2'' 237.7 237.5
H2' C2' C1' H2'' 117.7 120.7
N1 C1' C2' H1' 241.2 238.6
C2' C1' N1 C2 120.8 93.5
C2' C1' N1 C6 299.1 273.5
H2' C2' C3' H3' 330.1 321.1
C3' C2' H2' C1' 245.1 247.7
C3' C2' H2' H2'' 122.6 125.1
C1' C2' H2' H2'' 237.5 237.3
H2' C2' C1' N1 36.5 30.6
H2' C2' C1' H1' 155.3 151.9
H2'' C2' C3' H3' 87.8 82.7
C3' C2' H2'' C1' 116.7 115.6
C3' C2' H2'' H2' 238.3 237.5
C1' C2' H2'' H2' 121.6 122.0
H2'' C2' C1' N1 278.8 269.9
H2'' C2' C1' H1' 37.6 31.3
O4' C1' N1 C2' 113.2 119.4
O4' C1' N1 H1' 235.8 242.9
N1 C1' C2' H2' 36.5 30.6
N1 C1' C2' H2'' 278.8 269.9
C2' C1' N1 H1' 122.6 123.5
C2 N1 C1' C6 181.7 180.0
C1' N1 C2 O2 354.3 0.0
C1' N1 C2 N3 174.3 180.0
C1' N1 C6 C5 184.8 180.0
C1' N1 C6 H6 4.8 360.0
O4' C1' H1' C2' 243.3 242.3
O4' C1' H1' N1 120.7 118.0
H1' C1' C2' H2' 155.3 151.9
H1' C1' C2' H2'' 37.6 31.3
C2' C1' H1' N1 237.4 235.7
H1' C1' N1 C2 358.2 330.0
H1' C1' N1 C6 176.5 150.0
C2 N1 C1' H1' 358.2 330.0
C1' N1 C2 C6 178.3 180.0
C2 N1 C6 C5 3.1 0.0
C2 N1 C6 H6 183.1 180.0
O2 C2 N1 N3 180.0 180.0
N1 C2 N3 C4 2.1 360.0
N1 C2 N3 H3 182.1 180.0
C6 N1 C1' H1' 176.5 150.0
C1' N1 C6 C2 181.7 180.0
C6 N1 C2 O2 176.1 180.0
C6 N1 C2 N3 356.0 360.0
C4 C5 C6 N1 359.9 0.0
C7 C5 C6 N1 178.6 180.0
C5 C6 N1 H6 180.0 180.0
O2 C2 N1 C6 176.1 180.0
N1 C2 O2 N3 180.0 180.0
O2 C2 N3 C4 182.1 179.9
O2 C2 N3 H3 2.0 0.0
N3 C2 N1 C6 356.0 360.0
N1 C2 N3 O2 180.0 180.0
C4 N3 C2 H3 180.0 179.9
C2 N3 C4 O4 180.7 180.1
C2 N3 C4 C5 0.6 0.1
C2 N3 C4 H3 180.0 180.1
O4 C4 N3 C5 180.1 180.0
N3 C4 C5 C7 179.7 180.0
N3 C4 C5 C6 358.3 359.9
C2 N3 H3 C4 180.0 179.9
H3 N3 C4 O4 0.7 0.0
H3 N3 C4 C5 180.6 180.0
O4 C4 N3 H3 0.7 0.0
N3 C4 O4 C5 179.9 180.0
O4 C4 C5 C7 359.6 360.0
O4 C4 C5 C6 178.2 179.9
N1 C6 C5 C4 359.9 0.0
C5 C4 N3 H3 180.6 180.0
N3 C4 C5 O4 180.1 180.0
C7 C5 C4 C6 181.4 180.0
C4 C5 C7 H71 176.6 299.6
C4 C5 C7 H72 296.6 179.4
C4 C5 C7 H73 56.6 59.8
C4 C5 C6 H6 179.9 180.0
N1 C6 C5 C7 178.6 180.0
C4 C5 C7 C6 178.7 180.0
C7 C5 C6 H6 358.6 360.0
H71 C7 C5 H72 240.0 120.2
H71 C7 C5 H73 120.0 239.8
H72 C7 C5 H73 240.0 119.6
N1 C6 C5 H6 180.0 180.0
C4 C5 C6 C7 181.3 180.0
C6 C5 C7 H71 357.9 119.7
C6 C5 C7 H72 117.9 359.5
C6 C5 C7 H73 237.9 239.8
H71 C7 C5 C6 357.9 119.7
C5 C7 H71 H72 120.0 239.6
C5 C7 H71 H73 240.0 120.4
H72 C7 H71 H73 120.0 240.8
H72 C7 C5 C6 117.9 359.5
C5 C7 H72 H71 240.0 120.4
C5 C7 H72 H73 120.0 239.9
H71 C7 H72 H73 240.0 119.5
H73 C7 C5 C6 237.9 239.8
C5 C7 H73 H71 120.0 239.6
C5 C7 H73 H72 240.0 120.2
H71 C7 H73 H72 120.0 240.5
N1 C6 H6 C5 180.0 180.0