PDB Chemical Component DSB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DSB
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
O2 |
1.263 |
1.223 |
C1 |
C2 |
1.513 |
1.513 |
C1 |
O1 |
1.271 |
1.360 |
C2 |
C3 |
1.523 |
1.524 |
C2 |
H21 |
1.100 |
1.096 |
C2 |
H22 |
1.100 |
1.097 |
C3 |
C4 |
1.498 |
1.518 |
C3 |
H31 |
1.100 |
1.094 |
C3 |
H32 |
1.100 |
1.098 |
C5 |
C6 |
1.520 |
1.523 |
C5 |
C4 |
1.520 |
1.516 |
C5 |
H51 |
1.100 |
1.095 |
C5 |
H52 |
1.101 |
1.096 |
O1 |
H11 |
0.950 |
0.981 |
C6 |
C7 |
1.554 |
1.524 |
C6 |
H61 |
1.100 |
1.094 |
C6 |
H62 |
1.100 |
1.096 |
C8 |
C9 |
1.516 |
1.527 |
C8 |
C7 |
1.514 |
1.524 |
C8 |
H81 |
1.100 |
1.096 |
C8 |
H82 |
1.100 |
1.095 |
C9 |
C10 |
1.516 |
1.510 |
C9 |
H91 |
1.100 |
1.095 |
C9 |
H92 |
1.100 |
1.096 |
C10 |
O11 |
1.258 |
1.358 |
C10 |
O12 |
1.257 |
1.222 |
O11 |
H111 |
0.950 |
0.981 |
C7 |
O7 |
|
1.230 |
C4 |
O4 |
|
1.232 |
Bond Angles for DSB
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O2 |
C1 |
C2 |
115.1 |
125.9 |
O2 |
C1 |
O1 |
126.5 |
122.8 |
C2 |
C1 |
O1 |
118.4 |
111.3 |
C1 |
C2 |
C3 |
111.1 |
113.3 |
C1 |
C2 |
H21 |
108.6 |
108.7 |
C1 |
C2 |
H22 |
108.9 |
106.5 |
C1 |
O1 |
H11 |
109.5 |
115.0 |
C3 |
C2 |
H21 |
108.5 |
110.9 |
C3 |
C2 |
H22 |
108.9 |
108.4 |
C2 |
C3 |
C4 |
111.3 |
111.6 |
C2 |
C3 |
H31 |
108.4 |
113.5 |
C2 |
C3 |
H32 |
108.9 |
109.2 |
H21 |
C2 |
H22 |
110.8 |
108.8 |
C4 |
C3 |
H31 |
108.4 |
109.7 |
C4 |
C3 |
H32 |
108.9 |
106.2 |
C3 |
C4 |
C5 |
114.5 |
118.0 |
C3 |
C4 |
O4 |
|
120.9 |
H31 |
C3 |
H32 |
110.9 |
106.2 |
C6 |
C5 |
C4 |
114.0 |
111.4 |
C6 |
C5 |
H51 |
107.0 |
109.5 |
C6 |
C5 |
H52 |
108.0 |
112.8 |
C5 |
C6 |
C7 |
114.2 |
113.6 |
C5 |
C6 |
H61 |
106.9 |
111.2 |
C5 |
C6 |
H62 |
107.9 |
108.7 |
C4 |
C5 |
H51 |
107.0 |
108.3 |
C4 |
C5 |
H52 |
108.0 |
108.4 |
C5 |
C4 |
O4 |
|
121.1 |
H51 |
C5 |
H52 |
113.0 |
106.3 |
C7 |
C6 |
H61 |
106.9 |
108.1 |
C7 |
C6 |
H62 |
108.0 |
106.6 |
C6 |
C7 |
C8 |
125.8 |
115.3 |
C6 |
C7 |
O7 |
|
122.5 |
H61 |
C6 |
H62 |
113.2 |
108.5 |
C9 |
C8 |
C7 |
112.5 |
113.4 |
C9 |
C8 |
H81 |
107.8 |
108.6 |
C9 |
C8 |
H82 |
108.5 |
111.0 |
C8 |
C9 |
C10 |
109.5 |
112.6 |
C8 |
C9 |
H91 |
109.4 |
111.2 |
C8 |
C9 |
H92 |
109.5 |
108.3 |
C7 |
C8 |
H81 |
107.8 |
106.8 |
C7 |
C8 |
H82 |
108.4 |
108.4 |
C8 |
C7 |
O7 |
|
122.3 |
H81 |
C8 |
H82 |
111.9 |
108.4 |
C10 |
C9 |
H91 |
109.4 |
108.8 |
C10 |
C9 |
H92 |
109.5 |
107.1 |
C9 |
C10 |
O11 |
117.8 |
110.0 |
C9 |
C10 |
O12 |
116.6 |
126.3 |
H91 |
C9 |
H92 |
109.5 |
108.7 |
O11 |
C10 |
O12 |
125.5 |
123.7 |
C10 |
O11 |
H111 |
109.5 |
111.9 |
Torsion Angles for DSB
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
O2 |
O1 |
180.1 |
179.7 |
O2 |
C1 |
C2 |
C3 |
197.8 |
356.2 |
O2 |
C1 |
C2 |
H21 |
78.5 |
120.0 |
O2 |
C1 |
C2 |
H22 |
317.8 |
237.0 |
O2 |
C1 |
O1 |
H11 |
0.0 |
0.0 |
O2 |
C1 |
C2 |
O1 |
179.9 |
180.3 |
C2 |
C1 |
O1 |
H11 |
179.9 |
180.3 |
C3 |
C2 |
C1 |
H21 |
119.3 |
236.2 |
C3 |
C2 |
C1 |
H22 |
240.0 |
119.1 |
C1 |
C2 |
C3 |
C4 |
163.4 |
182.6 |
C1 |
C2 |
C3 |
H31 |
44.2 |
58.0 |
C1 |
C2 |
C3 |
H32 |
283.4 |
299.7 |
H21 |
C2 |
C1 |
H22 |
120.7 |
242.9 |
O2 |
C1 |
O1 |
C2 |
180.1 |
179.8 |
O1 |
C1 |
C2 |
C3 |
17.9 |
175.9 |
O1 |
C1 |
C2 |
H21 |
258.6 |
299.7 |
O1 |
C1 |
C2 |
H22 |
137.9 |
56.8 |
C3 |
C2 |
C1 |
O1 |
17.9 |
175.9 |
C1 |
C2 |
C3 |
H21 |
240.7 |
122.6 |
C1 |
C2 |
C3 |
H22 |
120.0 |
242.0 |
H21 |
C2 |
C3 |
H22 |
239.3 |
119.4 |
C4 |
C3 |
C2 |
H31 |
119.2 |
124.6 |
C4 |
C3 |
C2 |
H32 |
240.0 |
242.9 |
C2 |
C3 |
C4 |
C5 |
80.6 |
173.3 |
C2 |
C3 |
C4 |
O4 |
|
351.1 |
H31 |
C3 |
C2 |
H32 |
120.8 |
118.3 |
H21 |
C2 |
C1 |
O1 |
258.6 |
299.7 |
C1 |
C2 |
H21 |
C3 |
120.9 |
234.8 |
C1 |
C2 |
H21 |
H22 |
240.5 |
115.6 |
C3 |
C2 |
H21 |
H22 |
119.5 |
240.9 |
H21 |
C2 |
C3 |
C4 |
282.7 |
60.0 |
H21 |
C2 |
C3 |
H31 |
163.5 |
295.3 |
H21 |
C2 |
C3 |
H32 |
42.8 |
177.1 |
H22 |
C2 |
C1 |
O1 |
137.9 |
56.8 |
C1 |
C2 |
H22 |
C3 |
238.6 |
122.3 |
C1 |
C2 |
H22 |
H21 |
119.3 |
242.9 |
C3 |
C2 |
H22 |
H21 |
240.7 |
120.7 |
H22 |
C2 |
C3 |
C4 |
43.4 |
300.6 |
H22 |
C2 |
C3 |
H31 |
284.2 |
176.0 |
H22 |
C2 |
C3 |
H32 |
163.4 |
57.7 |
C4 |
C3 |
C2 |
H21 |
282.7 |
60.0 |
C4 |
C3 |
C2 |
H22 |
43.4 |
300.6 |
C2 |
C3 |
C4 |
H31 |
240.8 |
233.3 |
C2 |
C3 |
C4 |
H32 |
120.0 |
118.9 |
H31 |
C3 |
C4 |
H32 |
239.2 |
245.6 |
C6 |
C5 |
C4 |
C3 |
188.9 |
180.4 |
C3 |
C4 |
C5 |
H51 |
306.9 |
60.0 |
C3 |
C4 |
C5 |
H52 |
68.9 |
305.1 |
C5 |
C4 |
C3 |
O4 |
|
182.2 |
H31 |
C3 |
C2 |
H21 |
163.5 |
295.3 |
H31 |
C3 |
C2 |
H22 |
284.2 |
176.0 |
C2 |
C3 |
H31 |
C4 |
121.0 |
125.6 |
C2 |
C3 |
H31 |
H32 |
240.5 |
240.0 |
C4 |
C3 |
H31 |
H32 |
119.5 |
114.4 |
H31 |
C3 |
C4 |
C5 |
199.8 |
300.0 |
H31 |
C3 |
C4 |
O4 |
|
117.8 |
H32 |
C3 |
C2 |
H21 |
42.8 |
177.1 |
H32 |
C3 |
C2 |
H22 |
163.4 |
57.7 |
C2 |
C3 |
H32 |
C4 |
238.5 |
239.6 |
C2 |
C3 |
H32 |
H31 |
119.2 |
122.7 |
C4 |
C3 |
H32 |
H31 |
240.8 |
243.2 |
H32 |
C3 |
C4 |
C5 |
320.6 |
54.4 |
H32 |
C3 |
C4 |
O4 |
|
232.2 |
C3 |
C4 |
C5 |
C6 |
188.9 |
180.4 |
C4 |
C5 |
C6 |
H51 |
118.0 |
240.3 |
C4 |
C5 |
C6 |
H52 |
240.0 |
122.1 |
C6 |
C5 |
C4 |
O4 |
|
2.7 |
H51 |
C5 |
C6 |
H52 |
122.0 |
241.8 |
C7 |
C6 |
C5 |
H61 |
117.9 |
122.2 |
C7 |
C6 |
C5 |
H62 |
240.0 |
241.5 |
C5 |
C6 |
C7 |
C8 |
38.7 |
176.0 |
C5 |
C6 |
C7 |
O7 |
|
355.9 |
H61 |
C6 |
C5 |
H62 |
122.1 |
119.3 |
C5 |
C4 |
C3 |
H31 |
199.8 |
300.0 |
C5 |
C4 |
C3 |
H32 |
320.6 |
54.4 |
C3 |
C4 |
C5 |
O4 |
|
177.8 |
C6 |
C5 |
C4 |
H51 |
242.0 |
120.5 |
C6 |
C5 |
C4 |
H52 |
120.0 |
235.4 |
C4 |
C5 |
C6 |
C7 |
52.3 |
182.2 |
C4 |
C5 |
C6 |
H61 |
294.3 |
60.0 |
C4 |
C5 |
C6 |
H62 |
172.3 |
300.7 |
H51 |
C5 |
C4 |
H52 |
238.0 |
114.9 |
C6 |
C5 |
H51 |
C4 |
122.5 |
238.4 |
C6 |
C5 |
H51 |
H52 |
241.2 |
122.1 |
H51 |
C5 |
C6 |
C7 |
294.2 |
301.9 |
H51 |
C5 |
C6 |
H61 |
176.3 |
179.8 |
H51 |
C5 |
C6 |
H62 |
54.2 |
60.4 |
C4 |
C5 |
H51 |
H52 |
118.7 |
243.7 |
H51 |
C5 |
C4 |
O4 |
|
242.2 |
C6 |
C5 |
H52 |
C4 |
236.3 |
123.8 |
C6 |
C5 |
H52 |
H51 |
118.2 |
240.0 |
H52 |
C5 |
C6 |
C7 |
172.2 |
60.1 |
H52 |
C5 |
C6 |
H61 |
54.3 |
297.9 |
H52 |
C5 |
C6 |
H62 |
292.3 |
178.6 |
C4 |
C5 |
H52 |
H51 |
241.9 |
116.2 |
H52 |
C5 |
C4 |
O4 |
|
127.3 |
C7 |
C6 |
C5 |
C4 |
52.3 |
182.2 |
C7 |
C6 |
C5 |
H51 |
294.2 |
301.9 |
C7 |
C6 |
C5 |
H52 |
172.2 |
60.1 |
C5 |
C6 |
C7 |
H61 |
242.1 |
236.1 |
C5 |
C6 |
C7 |
H62 |
120.0 |
119.7 |
H61 |
C6 |
C7 |
H62 |
237.9 |
243.6 |
C9 |
C8 |
C7 |
C6 |
25.4 |
180.4 |
C6 |
C7 |
C8 |
H81 |
144.1 |
300.0 |
C6 |
C7 |
C8 |
H82 |
265.4 |
56.5 |
C8 |
C7 |
C6 |
O7 |
|
180.1 |
H61 |
C6 |
C5 |
C4 |
294.3 |
60.0 |
H61 |
C6 |
C5 |
H51 |
176.3 |
179.8 |
H61 |
C6 |
C5 |
H52 |
54.3 |
297.9 |
C5 |
C6 |
H61 |
C7 |
122.6 |
125.4 |
C5 |
C6 |
H61 |
H62 |
241.3 |
240.5 |
C7 |
C6 |
H61 |
H62 |
118.7 |
115.2 |
H61 |
C6 |
C7 |
C8 |
156.7 |
300.0 |
H61 |
C6 |
C7 |
O7 |
|
119.9 |
H62 |
C6 |
C5 |
C4 |
172.3 |
300.7 |
H62 |
C6 |
C5 |
H51 |
54.2 |
60.4 |
H62 |
C6 |
C5 |
H52 |
292.3 |
178.6 |
C5 |
C6 |
H62 |
C7 |
236.2 |
237.2 |
C5 |
C6 |
H62 |
H61 |
118.1 |
121.1 |
C7 |
C6 |
H62 |
H61 |
241.9 |
243.9 |
H62 |
C6 |
C7 |
C8 |
278.8 |
56.3 |
H62 |
C6 |
C7 |
O7 |
|
236.3 |
C6 |
C7 |
C8 |
C9 |
25.4 |
180.4 |
C7 |
C8 |
C9 |
H81 |
118.7 |
118.5 |
C7 |
C8 |
C9 |
H82 |
240.0 |
237.6 |
C9 |
C8 |
C7 |
O7 |
|
0.5 |
H81 |
C8 |
C9 |
H82 |
121.3 |
119.1 |
C10 |
C9 |
C8 |
H91 |
120.0 |
237.7 |
C10 |
C9 |
C8 |
H92 |
240.0 |
118.3 |
C8 |
C9 |
C10 |
O11 |
352.6 |
183.2 |
C8 |
C9 |
C10 |
O12 |
173.9 |
3.7 |
H91 |
C9 |
C8 |
H92 |
120.0 |
240.6 |
C8 |
C7 |
C6 |
H61 |
156.7 |
300.0 |
C8 |
C7 |
C6 |
H62 |
278.8 |
56.3 |
C6 |
C7 |
C8 |
O7 |
|
179.9 |
C9 |
C8 |
C7 |
H81 |
241.3 |
240.4 |
C9 |
C8 |
C7 |
H82 |
120.0 |
123.8 |
C7 |
C8 |
C9 |
C10 |
141.5 |
177.6 |
C7 |
C8 |
C9 |
H91 |
21.5 |
300.0 |
C7 |
C8 |
C9 |
H92 |
261.5 |
59.4 |
H81 |
C8 |
C7 |
H82 |
238.7 |
243.4 |
C9 |
C8 |
H81 |
C7 |
121.7 |
122.7 |
C9 |
C8 |
H81 |
H82 |
240.8 |
239.3 |
H81 |
C8 |
C9 |
C10 |
22.8 |
59.1 |
H81 |
C8 |
C9 |
H91 |
262.8 |
181.4 |
H81 |
C8 |
C9 |
H92 |
142.8 |
300.8 |
C7 |
C8 |
H81 |
H82 |
119.2 |
116.6 |
H81 |
C8 |
C7 |
O7 |
|
120.1 |
C9 |
C8 |
H82 |
C7 |
237.5 |
234.8 |
C9 |
C8 |
H82 |
H81 |
118.7 |
119.2 |
H82 |
C8 |
C9 |
C10 |
261.5 |
300.0 |
H82 |
C8 |
C9 |
H91 |
141.5 |
62.4 |
H82 |
C8 |
C9 |
H92 |
21.5 |
181.8 |
C7 |
C8 |
H82 |
H81 |
241.2 |
244.5 |
H82 |
C8 |
C7 |
O7 |
|
236.6 |
C10 |
C9 |
C8 |
C7 |
141.5 |
177.6 |
C10 |
C9 |
C8 |
H81 |
22.8 |
59.1 |
C10 |
C9 |
C8 |
H82 |
261.5 |
300.0 |
C8 |
C9 |
C10 |
H91 |
240.0 |
123.7 |
C8 |
C9 |
C10 |
H92 |
120.0 |
241.0 |
H91 |
C9 |
C10 |
H92 |
240.0 |
117.3 |
O11 |
C10 |
C9 |
O12 |
178.7 |
179.4 |
C9 |
C10 |
O11 |
H111 |
181.4 |
180.6 |
H91 |
C9 |
C8 |
C7 |
21.5 |
300.0 |
H91 |
C9 |
C8 |
H81 |
262.8 |
181.4 |
H91 |
C9 |
C8 |
H82 |
141.5 |
62.4 |
C8 |
C9 |
H91 |
C10 |
120.0 |
235.5 |
C8 |
C9 |
H91 |
H92 |
240.0 |
119.2 |
C10 |
C9 |
H91 |
H92 |
120.0 |
243.7 |
H91 |
C9 |
C10 |
O11 |
112.6 |
59.5 |
H91 |
C9 |
C10 |
O12 |
293.9 |
240.1 |
H92 |
C9 |
C8 |
C7 |
261.5 |
59.4 |
H92 |
C9 |
C8 |
H81 |
142.8 |
300.8 |
H92 |
C9 |
C8 |
H82 |
21.5 |
181.8 |
C8 |
C9 |
H92 |
C10 |
239.9 |
121.7 |
C8 |
C9 |
H92 |
H91 |
120.0 |
239.1 |
C10 |
C9 |
H92 |
H91 |
240.1 |
117.4 |
H92 |
C9 |
C10 |
O11 |
232.6 |
302.2 |
H92 |
C9 |
C10 |
O12 |
53.9 |
122.7 |
O11 |
C10 |
C9 |
H91 |
112.6 |
59.5 |
O11 |
C10 |
C9 |
H92 |
232.6 |
302.2 |
C9 |
C10 |
O11 |
O12 |
181.4 |
180.5 |
O12 |
C10 |
C9 |
H91 |
293.9 |
240.1 |
O12 |
C10 |
C9 |
H92 |
53.9 |
122.7 |
C9 |
C10 |
O12 |
O11 |
178.6 |
179.4 |
O12 |
C10 |
O11 |
H111 |
0.0 |
0.0 |
H111 |
O11 |
C10 |
O12 |
0.0 |
0.0 |
O7 |
C7 |
C6 |
H61 |
|
119.9 |
O7 |
C7 |
C6 |
H62 |
|
236.3 |
C6 |
C7 |
O7 |
C8 |
|
180.1 |
O7 |
C7 |
C8 |
H81 |
|
120.1 |
O7 |
C7 |
C8 |
H82 |
|
236.6 |
O4 |
C4 |
C3 |
H31 |
|
117.8 |
O4 |
C4 |
C3 |
H32 |
|
232.2 |
C3 |
C4 |
O4 |
C5 |
|
182.3 |
O4 |
C4 |
C5 |
H51 |
|
242.2 |
O4 |
C4 |
C5 |
H52 |
|
127.3 |