PDB Chemical Component DSB

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DSB

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 O2 1.263 1.223
C1 C2 1.513 1.513
C1 O1 1.271 1.360
C2 C3 1.523 1.524
C2 H21 1.100 1.096
C2 H22 1.100 1.097
C3 C4 1.498 1.518
C3 H31 1.100 1.094
C3 H32 1.100 1.098
C5 C6 1.520 1.523
C5 C4 1.520 1.516
C5 H51 1.100 1.095
C5 H52 1.101 1.096
O1 H11 0.950 0.981
C6 C7 1.554 1.524
C6 H61 1.100 1.094
C6 H62 1.100 1.096
C8 C9 1.516 1.527
C8 C7 1.514 1.524
C8 H81 1.100 1.096
C8 H82 1.100 1.095
C9 C10 1.516 1.510
C9 H91 1.100 1.095
C9 H92 1.100 1.096
C10 O11 1.258 1.358
C10 O12 1.257 1.222
O11 H111 0.950 0.981
C7 O7   1.230
C4 O4   1.232

Bond Angles for DSB

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O2 C1 C2 115.1 125.9
O2 C1 O1 126.5 122.8
C2 C1 O1 118.4 111.3
C1 C2 C3 111.1 113.3
C1 C2 H21 108.6 108.7
C1 C2 H22 108.9 106.5
C1 O1 H11 109.5 115.0
C3 C2 H21 108.5 110.9
C3 C2 H22 108.9 108.4
C2 C3 C4 111.3 111.6
C2 C3 H31 108.4 113.5
C2 C3 H32 108.9 109.2
H21 C2 H22 110.8 108.8
C4 C3 H31 108.4 109.7
C4 C3 H32 108.9 106.2
C3 C4 C5 114.5 118.0
C3 C4 O4   120.9
H31 C3 H32 110.9 106.2
C6 C5 C4 114.0 111.4
C6 C5 H51 107.0 109.5
C6 C5 H52 108.0 112.8
C5 C6 C7 114.2 113.6
C5 C6 H61 106.9 111.2
C5 C6 H62 107.9 108.7
C4 C5 H51 107.0 108.3
C4 C5 H52 108.0 108.4
C5 C4 O4   121.1
H51 C5 H52 113.0 106.3
C7 C6 H61 106.9 108.1
C7 C6 H62 108.0 106.6
C6 C7 C8 125.8 115.3
C6 C7 O7   122.5
H61 C6 H62 113.2 108.5
C9 C8 C7 112.5 113.4
C9 C8 H81 107.8 108.6
C9 C8 H82 108.5 111.0
C8 C9 C10 109.5 112.6
C8 C9 H91 109.4 111.2
C8 C9 H92 109.5 108.3
C7 C8 H81 107.8 106.8
C7 C8 H82 108.4 108.4
C8 C7 O7   122.3
H81 C8 H82 111.9 108.4
C10 C9 H91 109.4 108.8
C10 C9 H92 109.5 107.1
C9 C10 O11 117.8 110.0
C9 C10 O12 116.6 126.3
H91 C9 H92 109.5 108.7
O11 C10 O12 125.5 123.7
C10 O11 H111 109.5 111.9

Torsion Angles for DSB

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 C1 O2 O1 180.1 179.7
O2 C1 C2 C3 197.8 356.2
O2 C1 C2 H21 78.5 120.0
O2 C1 C2 H22 317.8 237.0
O2 C1 O1 H11 0.0 0.0
O2 C1 C2 O1 179.9 180.3
C2 C1 O1 H11 179.9 180.3
C3 C2 C1 H21 119.3 236.2
C3 C2 C1 H22 240.0 119.1
C1 C2 C3 C4 163.4 182.6
C1 C2 C3 H31 44.2 58.0
C1 C2 C3 H32 283.4 299.7
H21 C2 C1 H22 120.7 242.9
O2 C1 O1 C2 180.1 179.8
O1 C1 C2 C3 17.9 175.9
O1 C1 C2 H21 258.6 299.7
O1 C1 C2 H22 137.9 56.8
C3 C2 C1 O1 17.9 175.9
C1 C2 C3 H21 240.7 122.6
C1 C2 C3 H22 120.0 242.0
H21 C2 C3 H22 239.3 119.4
C4 C3 C2 H31 119.2 124.6
C4 C3 C2 H32 240.0 242.9
C2 C3 C4 C5 80.6 173.3
C2 C3 C4 O4   351.1
H31 C3 C2 H32 120.8 118.3
H21 C2 C1 O1 258.6 299.7
C1 C2 H21 C3 120.9 234.8
C1 C2 H21 H22 240.5 115.6
C3 C2 H21 H22 119.5 240.9
H21 C2 C3 C4 282.7 60.0
H21 C2 C3 H31 163.5 295.3
H21 C2 C3 H32 42.8 177.1
H22 C2 C1 O1 137.9 56.8
C1 C2 H22 C3 238.6 122.3
C1 C2 H22 H21 119.3 242.9
C3 C2 H22 H21 240.7 120.7
H22 C2 C3 C4 43.4 300.6
H22 C2 C3 H31 284.2 176.0
H22 C2 C3 H32 163.4 57.7
C4 C3 C2 H21 282.7 60.0
C4 C3 C2 H22 43.4 300.6
C2 C3 C4 H31 240.8 233.3
C2 C3 C4 H32 120.0 118.9
H31 C3 C4 H32 239.2 245.6
C6 C5 C4 C3 188.9 180.4
C3 C4 C5 H51 306.9 60.0
C3 C4 C5 H52 68.9 305.1
C5 C4 C3 O4   182.2
H31 C3 C2 H21 163.5 295.3
H31 C3 C2 H22 284.2 176.0
C2 C3 H31 C4 121.0 125.6
C2 C3 H31 H32 240.5 240.0
C4 C3 H31 H32 119.5 114.4
H31 C3 C4 C5 199.8 300.0
H31 C3 C4 O4   117.8
H32 C3 C2 H21 42.8 177.1
H32 C3 C2 H22 163.4 57.7
C2 C3 H32 C4 238.5 239.6
C2 C3 H32 H31 119.2 122.7
C4 C3 H32 H31 240.8 243.2
H32 C3 C4 C5 320.6 54.4
H32 C3 C4 O4   232.2
C3 C4 C5 C6 188.9 180.4
C4 C5 C6 H51 118.0 240.3
C4 C5 C6 H52 240.0 122.1
C6 C5 C4 O4   2.7
H51 C5 C6 H52 122.0 241.8
C7 C6 C5 H61 117.9 122.2
C7 C6 C5 H62 240.0 241.5
C5 C6 C7 C8 38.7 176.0
C5 C6 C7 O7   355.9
H61 C6 C5 H62 122.1 119.3
C5 C4 C3 H31 199.8 300.0
C5 C4 C3 H32 320.6 54.4
C3 C4 C5 O4   177.8
C6 C5 C4 H51 242.0 120.5
C6 C5 C4 H52 120.0 235.4
C4 C5 C6 C7 52.3 182.2
C4 C5 C6 H61 294.3 60.0
C4 C5 C6 H62 172.3 300.7
H51 C5 C4 H52 238.0 114.9
C6 C5 H51 C4 122.5 238.4
C6 C5 H51 H52 241.2 122.1
H51 C5 C6 C7 294.2 301.9
H51 C5 C6 H61 176.3 179.8
H51 C5 C6 H62 54.2 60.4
C4 C5 H51 H52 118.7 243.7
H51 C5 C4 O4   242.2
C6 C5 H52 C4 236.3 123.8
C6 C5 H52 H51 118.2 240.0
H52 C5 C6 C7 172.2 60.1
H52 C5 C6 H61 54.3 297.9
H52 C5 C6 H62 292.3 178.6
C4 C5 H52 H51 241.9 116.2
H52 C5 C4 O4   127.3
C7 C6 C5 C4 52.3 182.2
C7 C6 C5 H51 294.2 301.9
C7 C6 C5 H52 172.2 60.1
C5 C6 C7 H61 242.1 236.1
C5 C6 C7 H62 120.0 119.7
H61 C6 C7 H62 237.9 243.6
C9 C8 C7 C6 25.4 180.4
C6 C7 C8 H81 144.1 300.0
C6 C7 C8 H82 265.4 56.5
C8 C7 C6 O7   180.1
H61 C6 C5 C4 294.3 60.0
H61 C6 C5 H51 176.3 179.8
H61 C6 C5 H52 54.3 297.9
C5 C6 H61 C7 122.6 125.4
C5 C6 H61 H62 241.3 240.5
C7 C6 H61 H62 118.7 115.2
H61 C6 C7 C8 156.7 300.0
H61 C6 C7 O7   119.9
H62 C6 C5 C4 172.3 300.7
H62 C6 C5 H51 54.2 60.4
H62 C6 C5 H52 292.3 178.6
C5 C6 H62 C7 236.2 237.2
C5 C6 H62 H61 118.1 121.1
C7 C6 H62 H61 241.9 243.9
H62 C6 C7 C8 278.8 56.3
H62 C6 C7 O7   236.3
C6 C7 C8 C9 25.4 180.4
C7 C8 C9 H81 118.7 118.5
C7 C8 C9 H82 240.0 237.6
C9 C8 C7 O7   0.5
H81 C8 C9 H82 121.3 119.1
C10 C9 C8 H91 120.0 237.7
C10 C9 C8 H92 240.0 118.3
C8 C9 C10 O11 352.6 183.2
C8 C9 C10 O12 173.9 3.7
H91 C9 C8 H92 120.0 240.6
C8 C7 C6 H61 156.7 300.0
C8 C7 C6 H62 278.8 56.3
C6 C7 C8 O7   179.9
C9 C8 C7 H81 241.3 240.4
C9 C8 C7 H82 120.0 123.8
C7 C8 C9 C10 141.5 177.6
C7 C8 C9 H91 21.5 300.0
C7 C8 C9 H92 261.5 59.4
H81 C8 C7 H82 238.7 243.4
C9 C8 H81 C7 121.7 122.7
C9 C8 H81 H82 240.8 239.3
H81 C8 C9 C10 22.8 59.1
H81 C8 C9 H91 262.8 181.4
H81 C8 C9 H92 142.8 300.8
C7 C8 H81 H82 119.2 116.6
H81 C8 C7 O7   120.1
C9 C8 H82 C7 237.5 234.8
C9 C8 H82 H81 118.7 119.2
H82 C8 C9 C10 261.5 300.0
H82 C8 C9 H91 141.5 62.4
H82 C8 C9 H92 21.5 181.8
C7 C8 H82 H81 241.2 244.5
H82 C8 C7 O7   236.6
C10 C9 C8 C7 141.5 177.6
C10 C9 C8 H81 22.8 59.1
C10 C9 C8 H82 261.5 300.0
C8 C9 C10 H91 240.0 123.7
C8 C9 C10 H92 120.0 241.0
H91 C9 C10 H92 240.0 117.3
O11 C10 C9 O12 178.7 179.4
C9 C10 O11 H111 181.4 180.6
H91 C9 C8 C7 21.5 300.0
H91 C9 C8 H81 262.8 181.4
H91 C9 C8 H82 141.5 62.4
C8 C9 H91 C10 120.0 235.5
C8 C9 H91 H92 240.0 119.2
C10 C9 H91 H92 120.0 243.7
H91 C9 C10 O11 112.6 59.5
H91 C9 C10 O12 293.9 240.1
H92 C9 C8 C7 261.5 59.4
H92 C9 C8 H81 142.8 300.8
H92 C9 C8 H82 21.5 181.8
C8 C9 H92 C10 239.9 121.7
C8 C9 H92 H91 120.0 239.1
C10 C9 H92 H91 240.1 117.4
H92 C9 C10 O11 232.6 302.2
H92 C9 C10 O12 53.9 122.7
O11 C10 C9 H91 112.6 59.5
O11 C10 C9 H92 232.6 302.2
C9 C10 O11 O12 181.4 180.5
O12 C10 C9 H91 293.9 240.1
O12 C10 C9 H92 53.9 122.7
C9 C10 O12 O11 178.6 179.4
O12 C10 O11 H111 0.0 0.0
H111 O11 C10 O12 0.0 0.0
O7 C7 C6 H61   119.9
O7 C7 C6 H62   236.3
C6 C7 O7 C8   180.1
O7 C7 C8 H81   120.1
O7 C7 C8 H82   236.6
O4 C4 C3 H31   117.8
O4 C4 C3 H32   232.2
C3 C4 O4 C5   182.3
O4 C4 C5 H51   242.2
O4 C4 C5 H52   127.3