PDB Chemical Component DQ5
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DQ5
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C26 |
C25 |
1.392 |
1.361 |
| C26 |
C27 |
1.382 |
1.393 |
| C25 |
C24 |
1.402 |
1.406 |
| C27 |
C28 |
1.404 |
1.362 |
| C24 |
N23 |
1.388 |
1.333 |
| C24 |
C29 |
1.387 |
1.415 |
| N23 |
C22 |
1.396 |
1.322 |
| C28 |
C29 |
1.391 |
1.402 |
| C29 |
C16 |
1.442 |
1.413 |
| C22 |
C21 |
1.509 |
1.509 |
| C22 |
C17 |
1.392 |
1.383 |
| C21 |
C20 |
1.507 |
1.527 |
| C16 |
C17 |
1.473 |
1.392 |
| C16 |
N01 |
1.480 |
1.386 |
| O14 |
N13 |
1.376 |
1.416 |
| C17 |
C18 |
1.521 |
1.506 |
| N01 |
C02 |
1.466 |
1.469 |
| C20 |
C19 |
1.509 |
1.533 |
| N13 |
C12 |
1.304 |
1.293 |
| C19 |
C18 |
1.529 |
1.527 |
| C12 |
C11 |
1.517 |
1.476 |
| C02 |
C03 |
1.548 |
1.529 |
| C11 |
N15 |
1.369 |
1.328 |
| C11 |
C09 |
1.373 |
1.401 |
| C03 |
C04 |
1.559 |
1.531 |
| C04 |
C05 |
1.547 |
1.530 |
| N15 |
C06 |
1.384 |
1.316 |
| O10 |
C09 |
1.420 |
1.358 |
| C09 |
C08 |
1.366 |
1.390 |
| C06 |
C05 |
1.544 |
1.507 |
| C06 |
C07 |
1.387 |
1.385 |
| C08 |
C07 |
1.376 |
1.386 |
| C02 |
H1 |
1.100 |
1.090 |
| C02 |
H2 |
1.100 |
1.091 |
| C03 |
H3 |
1.100 |
1.091 |
| C03 |
H4 |
1.100 |
1.090 |
| C04 |
H5 |
1.100 |
1.090 |
| C04 |
H6 |
1.100 |
1.091 |
| C05 |
H7 |
1.100 |
1.090 |
| C05 |
H8 |
1.100 |
1.091 |
| C07 |
H9 |
1.080 |
1.080 |
| C08 |
H10 |
1.080 |
1.081 |
| C12 |
H11 |
1.080 |
1.080 |
| C18 |
H12 |
1.100 |
1.089 |
| C18 |
H13 |
1.100 |
1.090 |
| C19 |
H14 |
1.101 |
1.091 |
| C19 |
H15 |
1.100 |
1.090 |
| C20 |
H16 |
1.100 |
1.091 |
| C20 |
H17 |
1.100 |
1.089 |
| C21 |
H18 |
1.100 |
1.090 |
| C21 |
H19 |
1.100 |
1.090 |
| C25 |
H20 |
1.080 |
1.080 |
| C26 |
H21 |
1.080 |
1.080 |
| C27 |
H22 |
1.080 |
1.080 |
| C28 |
H23 |
1.080 |
1.080 |
| N01 |
H24 |
1.000 |
1.009 |
| O10 |
H25 |
0.950 |
0.967 |
| O14 |
H26 |
0.950 |
0.967 |
Bond Angles for DQ5
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C26 |
C25 |
H20 |
119.9 |
120.1 |
| C26 |
C27 |
C28 |
120.3 |
120.8 |
| C27 |
C26 |
H21 |
120.4 |
119.5 |
| C26 |
C27 |
H22 |
119.9 |
119.6 |
| C25 |
C24 |
N23 |
119.1 |
121.3 |
| C25 |
C24 |
C29 |
121.1 |
119.0 |
| C27 |
C28 |
C29 |
121.0 |
119.6 |
| C28 |
C27 |
H22 |
119.8 |
119.6 |
| C27 |
C28 |
H23 |
119.5 |
120.2 |
| C29 |
C24 |
N23 |
119.8 |
119.7 |
| C24 |
C29 |
C28 |
118.3 |
119.8 |
| C29 |
C28 |
H23 |
119.5 |
120.1 |
| C29 |
C16 |
N01 |
116.9 |
120.8 |
| C22 |
C21 |
H18 |
108.3 |
109.3 |
| C22 |
C21 |
H19 |
108.3 |
109.2 |
| C21 |
C20 |
H16 |
108.4 |
109.6 |
| C21 |
C20 |
H17 |
108.4 |
109.9 |
| C17 |
C16 |
N01 |
124.7 |
120.8 |
| C16 |
C17 |
C18 |
124.0 |
117.5 |
| C16 |
N01 |
H24 |
105.0 |
111.0 |
| C17 |
C18 |
H12 |
108.0 |
109.3 |
| C17 |
C18 |
H13 |
107.9 |
109.2 |
| N01 |
C02 |
H1 |
108.6 |
109.5 |
| N01 |
C02 |
H2 |
108.6 |
109.5 |
| C20 |
C19 |
H14 |
108.3 |
109.7 |
| C20 |
C19 |
H15 |
108.3 |
109.7 |
| N13 |
C12 |
H11 |
118.4 |
120.0 |
| C19 |
C18 |
H12 |
107.9 |
109.3 |
| C19 |
C18 |
H13 |
108.0 |
109.2 |
| C12 |
C11 |
N15 |
125.6 |
119.8 |
| C02 |
C03 |
C04 |
110.2 |
109.5 |
| C03 |
C02 |
H1 |
108.6 |
109.5 |
| C03 |
C02 |
H2 |
108.6 |
109.4 |
| C02 |
C03 |
H3 |
109.3 |
109.5 |
| C02 |
C03 |
H4 |
109.3 |
109.5 |
| C03 |
C04 |
C05 |
112.1 |
109.5 |
| C04 |
C03 |
H3 |
109.3 |
109.4 |
| C04 |
C03 |
H4 |
109.3 |
109.4 |
| C03 |
C04 |
H5 |
108.8 |
109.4 |
| C03 |
C04 |
H6 |
108.8 |
109.4 |
| C05 |
C04 |
H5 |
108.8 |
109.5 |
| C05 |
C04 |
H6 |
108.8 |
109.5 |
| C04 |
C05 |
H7 |
108.8 |
109.5 |
| C04 |
C05 |
H8 |
108.8 |
109.4 |
| C09 |
C08 |
H10 |
120.4 |
120.8 |
| C06 |
C05 |
H7 |
108.8 |
109.5 |
| C06 |
C05 |
H8 |
108.8 |
109.5 |
| C06 |
C07 |
H9 |
119.7 |
120.3 |
| C08 |
C07 |
H9 |
119.7 |
120.3 |
| H1 |
C02 |
H2 |
109.5 |
109.4 |
| H3 |
C03 |
H4 |
109.5 |
109.5 |
| H5 |
C04 |
H6 |
109.5 |
109.5 |
| H7 |
C05 |
H8 |
109.5 |
109.5 |
| H12 |
C18 |
H13 |
109.5 |
109.3 |
| H14 |
C19 |
H15 |
109.5 |
109.7 |
| H16 |
C20 |
H17 |
109.5 |
109.7 |
| H18 |
C21 |
H19 |
109.5 |
109.3 |
Torsion Angles for DQ5
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C26 |
C25 |
C24 |
N23 |
179.4 |
179.9 |
| C26 |
C25 |
C24 |
C29 |
359.5 |
359.2 |
| C27 |
C26 |
C25 |
H20 |
180.3 |
180.0 |
| C26 |
C27 |
C28 |
C29 |
359.5 |
359.2 |
| C28 |
C27 |
C26 |
H22 |
180.0 |
180.9 |
| C26 |
C27 |
C28 |
H23 |
179.5 |
179.9 |
| C29 |
C24 |
C25 |
N23 |
180.0 |
179.2 |
| C25 |
C24 |
C29 |
C28 |
0.2 |
0.8 |
| C28 |
C27 |
C26 |
H21 |
180.2 |
180.8 |
| C26 |
C27 |
C28 |
H22 |
180.0 |
179.1 |
| C24 |
C29 |
C28 |
C27 |
0.3 |
360.0 |
| C29 |
C28 |
C27 |
H23 |
180.0 |
179.3 |
| C25 |
C24 |
N23 |
C29 |
180.0 |
179.2 |
| N23 |
C24 |
C29 |
C28 |
180.3 |
180.1 |
| C25 |
C24 |
C29 |
N23 |
180.0 |
180.7 |
| C27 |
C28 |
C29 |
C24 |
0.3 |
360.0 |
| C24 |
C29 |
C28 |
H23 |
180.3 |
179.3 |
| C24 |
C29 |
C16 |
N01 |
179.4 |
180.2 |
| N23 |
C22 |
C21 |
H18 |
288.6 |
42.0 |
| N23 |
C22 |
C21 |
H19 |
47.2 |
282.5 |
| C29 |
C28 |
C27 |
H22 |
179.5 |
180.1 |
| C27 |
C28 |
C29 |
H23 |
180.0 |
180.7 |
| C28 |
C29 |
C24 |
N23 |
180.3 |
180.1 |
| C28 |
C29 |
C16 |
N01 |
0.2 |
359.6 |
| C17 |
C16 |
C29 |
N01 |
179.7 |
179.8 |
| C29 |
C16 |
N01 |
H24 |
307.9 |
40.0 |
| C22 |
C21 |
C20 |
H16 |
158.1 |
291.9 |
| C22 |
C21 |
C20 |
H17 |
276.9 |
171.3 |
| H18 |
C21 |
C22 |
H19 |
241.4 |
119.5 |
| C22 |
C17 |
C16 |
N01 |
180.1 |
180.0 |
| C22 |
C17 |
C18 |
H12 |
108.0 |
102.8 |
| C22 |
C17 |
C18 |
H13 |
226.3 |
222.3 |
| C21 |
C20 |
C19 |
H14 |
69.6 |
170.2 |
| C21 |
C20 |
C19 |
H15 |
188.2 |
49.6 |
| H16 |
C20 |
C21 |
H17 |
241.2 |
120.6 |
| C29 |
C16 |
C17 |
N01 |
180.3 |
180.2 |
| C17 |
C16 |
N01 |
H24 |
128.2 |
220.2 |
| C16 |
C17 |
C18 |
H12 |
287.6 |
283.0 |
| C16 |
C17 |
C18 |
H13 |
45.9 |
42.5 |
| N01 |
C16 |
C17 |
C18 |
0.5 |
359.8 |
| C16 |
N01 |
C02 |
H1 |
265.7 |
56.3 |
| C16 |
N01 |
C02 |
H2 |
24.6 |
296.3 |
| O14 |
N13 |
C12 |
H11 |
5.9 |
0.0 |
| C18 |
C17 |
C16 |
N01 |
0.5 |
359.8 |
| C19 |
C18 |
C17 |
H12 |
239.1 |
239.7 |
| C19 |
C18 |
C17 |
H13 |
120.9 |
120.2 |
| H12 |
C18 |
C17 |
H13 |
241.8 |
240.5 |
| C03 |
C02 |
N01 |
H1 |
239.5 |
120.0 |
| C03 |
C02 |
N01 |
H2 |
120.5 |
240.0 |
| N01 |
C02 |
C03 |
H3 |
91.3 |
300.0 |
| N01 |
C02 |
C03 |
H4 |
211.1 |
60.0 |
| H1 |
C02 |
N01 |
H2 |
241.1 |
120.0 |
| C20 |
C19 |
C18 |
H12 |
277.4 |
290.7 |
| C20 |
C19 |
C18 |
H13 |
159.1 |
171.2 |
| H14 |
C19 |
C20 |
H15 |
241.4 |
120.6 |
| N13 |
C12 |
C11 |
N15 |
18.1 |
360.0 |
| C17 |
C18 |
C19 |
H12 |
120.9 |
120.3 |
| C17 |
C18 |
C19 |
H13 |
239.1 |
239.8 |
| H12 |
C18 |
C19 |
H13 |
118.2 |
119.5 |
| N01 |
C02 |
C03 |
H1 |
120.5 |
240.0 |
| N01 |
C02 |
C03 |
H2 |
239.5 |
120.0 |
| C02 |
C03 |
C04 |
C05 |
261.9 |
180.0 |
| C04 |
C03 |
C02 |
H3 |
239.9 |
240.0 |
| C04 |
C03 |
C02 |
H4 |
120.1 |
120.0 |
| C02 |
C03 |
C04 |
H5 |
22.3 |
300.0 |
| C02 |
C03 |
C04 |
H6 |
141.5 |
60.0 |
| H1 |
C02 |
C03 |
H2 |
119.0 |
240.0 |
| H3 |
C03 |
C02 |
H4 |
240.2 |
240.0 |
| C11 |
C09 |
C08 |
H10 |
180.5 |
180.0 |
| C04 |
C03 |
C02 |
H1 |
210.7 |
300.0 |
| C04 |
C03 |
C02 |
H2 |
91.7 |
60.0 |
| C02 |
C03 |
C04 |
H3 |
120.1 |
120.0 |
| C02 |
C03 |
C04 |
H4 |
239.9 |
239.9 |
| C05 |
C04 |
C03 |
H5 |
239.6 |
239.9 |
| C05 |
C04 |
C03 |
H6 |
120.4 |
120.0 |
| C03 |
C04 |
C05 |
H7 |
191.5 |
300.0 |
| C03 |
C04 |
C05 |
H8 |
310.7 |
60.0 |
| H3 |
C03 |
C04 |
H4 |
119.8 |
119.9 |
| H5 |
C04 |
C03 |
H6 |
240.8 |
240.1 |
| C05 |
C04 |
C03 |
H3 |
141.8 |
60.0 |
| C05 |
C04 |
C03 |
H4 |
22.0 |
300.0 |
| C03 |
C04 |
C05 |
H5 |
120.4 |
120.0 |
| C03 |
C04 |
C05 |
H6 |
239.6 |
240.0 |
| C06 |
C05 |
C04 |
H7 |
239.6 |
240.0 |
| C06 |
C05 |
C04 |
H8 |
120.4 |
120.0 |
| H5 |
C04 |
C05 |
H6 |
119.2 |
120.1 |
| H7 |
C05 |
C04 |
H8 |
240.8 |
240.0 |
| N15 |
C06 |
C05 |
H7 |
305.9 |
184.7 |
| N15 |
C06 |
C05 |
H8 |
186.7 |
64.7 |
| N15 |
C06 |
C07 |
H9 |
180.7 |
180.2 |
| O10 |
C09 |
C08 |
H10 |
1.2 |
360.0 |
| C09 |
C08 |
C07 |
H9 |
179.1 |
180.0 |
| C06 |
C05 |
C04 |
H5 |
310.7 |
60.0 |
| C06 |
C05 |
C04 |
H6 |
191.5 |
299.9 |
| C04 |
C05 |
C06 |
H7 |
120.4 |
120.0 |
| C04 |
C05 |
C06 |
H8 |
239.6 |
240.0 |
| H7 |
C05 |
C06 |
H8 |
119.2 |
120.0 |
| C07 |
C06 |
C05 |
H7 |
125.6 |
5.0 |
| C07 |
C06 |
C05 |
H8 |
6.5 |
245.0 |
| C08 |
C07 |
C06 |
H9 |
180.0 |
180.0 |
| C06 |
C07 |
C08 |
H9 |
180.0 |
180.0 |
| N01 |
C02 |
H1 |
H2 |
118.4 |
240.0 |
| H1 |
C02 |
C03 |
C04 |
210.7 |
300.0 |
| C03 |
C02 |
H1 |
H2 |
241.6 |
120.0 |
| H1 |
C02 |
C03 |
H3 |
330.8 |
60.0 |
| H1 |
C02 |
C03 |
H4 |
90.6 |
180.0 |
| N01 |
C02 |
H2 |
H1 |
241.6 |
120.0 |
| H2 |
C02 |
C03 |
C04 |
91.7 |
60.0 |
| C03 |
C02 |
H2 |
H1 |
118.4 |
240.0 |
| H2 |
C02 |
C03 |
H3 |
211.8 |
180.0 |
| H2 |
C02 |
C03 |
H4 |
331.6 |
300.0 |
| C02 |
C03 |
H3 |
C04 |
239.4 |
240.0 |
| H3 |
C03 |
C02 |
H1 |
330.8 |
60.0 |
| H3 |
C03 |
C02 |
H2 |
211.8 |
180.0 |
| C02 |
C03 |
H3 |
H4 |
119.7 |
120.1 |
| H3 |
C03 |
C04 |
C05 |
141.8 |
60.0 |
| C04 |
C03 |
H3 |
H4 |
240.3 |
240.1 |
| H3 |
C03 |
C04 |
H5 |
262.2 |
180.0 |
| H3 |
C03 |
C04 |
H6 |
21.4 |
300.0 |
| C02 |
C03 |
H4 |
C04 |
120.6 |
120.1 |
| H4 |
C03 |
C02 |
H1 |
90.6 |
180.0 |
| H4 |
C03 |
C02 |
H2 |
331.6 |
300.0 |
| C02 |
C03 |
H4 |
H3 |
240.3 |
240.0 |
| H4 |
C03 |
C04 |
C05 |
22.0 |
300.0 |
| C04 |
C03 |
H4 |
H3 |
119.7 |
119.9 |
| H4 |
C03 |
C04 |
H5 |
142.4 |
60.1 |
| H4 |
C03 |
C04 |
H6 |
261.6 |
180.0 |
| C03 |
C04 |
H5 |
C05 |
237.6 |
240.0 |
| H5 |
C04 |
C03 |
H3 |
262.2 |
180.0 |
| H5 |
C04 |
C03 |
H4 |
142.4 |
60.1 |
| C03 |
C04 |
H5 |
H6 |
118.8 |
119.9 |
| C05 |
C04 |
H5 |
H6 |
241.2 |
239.9 |
| H5 |
C04 |
C05 |
H7 |
71.1 |
180.0 |
| H5 |
C04 |
C05 |
H8 |
190.3 |
300.0 |
| C03 |
C04 |
H6 |
C05 |
122.4 |
120.0 |
| H6 |
C04 |
C03 |
H3 |
21.4 |
300.0 |
| H6 |
C04 |
C03 |
H4 |
261.6 |
180.0 |
| C03 |
C04 |
H6 |
H5 |
241.2 |
240.1 |
| C05 |
C04 |
H6 |
H5 |
118.8 |
120.1 |
| H6 |
C04 |
C05 |
H7 |
311.9 |
60.0 |
| H6 |
C04 |
C05 |
H8 |
71.1 |
180.0 |
| H7 |
C05 |
C04 |
H5 |
71.1 |
180.0 |
| H7 |
C05 |
C04 |
H6 |
311.9 |
60.0 |
| C04 |
C05 |
H7 |
H8 |
118.7 |
120.0 |
| C06 |
C05 |
H7 |
H8 |
241.3 |
240.0 |
| H8 |
C05 |
C04 |
H5 |
190.3 |
300.0 |
| H8 |
C05 |
C04 |
H6 |
71.1 |
180.0 |
| C04 |
C05 |
H8 |
H7 |
241.3 |
240.0 |
| C06 |
C05 |
H8 |
H7 |
118.8 |
120.1 |
| H10 |
C08 |
C07 |
H9 |
359.1 |
0.0 |
| H11 |
C12 |
C11 |
N15 |
198.1 |
179.9 |
| C17 |
C18 |
H12 |
H13 |
117.3 |
119.5 |
| C19 |
C18 |
H12 |
H13 |
242.7 |
240.6 |
| C17 |
C18 |
H13 |
H12 |
242.7 |
240.5 |
| C19 |
C18 |
H13 |
H12 |
117.2 |
119.5 |
| C20 |
C19 |
H14 |
H15 |
117.8 |
239.4 |
| H14 |
C19 |
C18 |
H12 |
156.7 |
50.4 |
| H14 |
C19 |
C18 |
H13 |
38.4 |
290.9 |
| C20 |
C19 |
H15 |
H14 |
242.2 |
120.5 |
| H15 |
C19 |
C18 |
H12 |
38.0 |
171.0 |
| H15 |
C19 |
C18 |
H13 |
279.8 |
51.5 |
| C21 |
C20 |
H16 |
H17 |
118.1 |
239.3 |
| H16 |
C20 |
C19 |
H14 |
309.0 |
289.8 |
| H16 |
C20 |
C19 |
H15 |
67.6 |
169.2 |
| C21 |
C20 |
H17 |
H16 |
241.9 |
120.5 |
| H17 |
C20 |
C19 |
H14 |
190.2 |
50.2 |
| H17 |
C20 |
C19 |
H15 |
308.8 |
289.7 |
| C22 |
C21 |
H18 |
H19 |
117.8 |
240.5 |
| H18 |
C21 |
C20 |
H16 |
37.4 |
52.2 |
| H18 |
C21 |
C20 |
H17 |
156.2 |
291.6 |
| C22 |
C21 |
H19 |
H18 |
242.1 |
119.5 |
| H19 |
C21 |
C20 |
H16 |
278.8 |
171.6 |
| H19 |
C21 |
C20 |
H17 |
37.6 |
51.1 |
| H20 |
C25 |
C24 |
N23 |
359.4 |
359.9 |
| H20 |
C25 |
C24 |
C29 |
179.5 |
179.2 |
| H21 |
C26 |
C25 |
H20 |
0.3 |
0.0 |
| H21 |
C26 |
C27 |
C28 |
180.2 |
180.8 |
| H21 |
C26 |
C27 |
H22 |
0.2 |
359.9 |
| C26 |
C27 |
H22 |
C28 |
180.0 |
180.9 |
| H22 |
C27 |
C26 |
H21 |
0.2 |
359.9 |
| H22 |
C27 |
C28 |
C29 |
179.5 |
180.1 |
| H22 |
C27 |
C28 |
H23 |
359.5 |
0.8 |
| C27 |
C28 |
H23 |
C29 |
180.0 |
179.3 |
| H23 |
C28 |
C27 |
H22 |
359.5 |
0.8 |
| H24 |
N01 |
C02 |
H1 |
143.4 |
292.3 |
| H24 |
N01 |
C02 |
H2 |
262.3 |
172.3 |