PDB Chemical Component DPR
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DPR
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N |
CA |
1.452 |
1.475 |
N |
CD |
1.460 |
1.478 |
N |
H |
1.000 |
1.009 |
CA |
CB |
1.520 |
1.543 |
CA |
C |
1.531 |
1.507 |
CA |
HA |
1.100 |
1.090 |
CB |
CG |
1.520 |
1.551 |
CB |
HB2 |
1.100 |
1.090 |
CB |
HB3 |
1.100 |
1.090 |
CG |
CD |
1.520 |
1.549 |
CG |
HG2 |
1.100 |
1.091 |
CG |
HG3 |
1.100 |
1.090 |
CD |
HD2 |
1.100 |
1.090 |
CD |
HD3 |
1.100 |
1.090 |
C |
O |
1.229 |
1.208 |
C |
OXT |
|
1.342 |
OXT |
HXT |
|
0.967 |
Bond Angles for DPR
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
CA |
N |
CD |
113.1 |
108.6 |
CA |
N |
H |
108.3 |
111.0 |
N |
CA |
CB |
104.9 |
107.2 |
N |
CA |
C |
111.0 |
109.9 |
N |
CA |
HA |
112.8 |
109.9 |
CD |
N |
H |
108.3 |
111.0 |
N |
CD |
CG |
104.7 |
104.8 |
N |
CD |
HD2 |
111.1 |
110.4 |
N |
CD |
HD3 |
111.1 |
110.4 |
CB |
CA |
C |
113.0 |
109.9 |
CB |
CA |
HA |
110.7 |
109.9 |
CA |
CB |
CG |
105.9 |
103.0 |
CA |
CB |
HB2 |
110.7 |
110.6 |
CA |
CB |
HB3 |
110.6 |
110.7 |
C |
CA |
HA |
104.6 |
110.0 |
CA |
C |
O |
120.4 |
120.0 |
CA |
C |
OXT |
|
120.0 |
CG |
CB |
HB2 |
110.7 |
110.7 |
CG |
CB |
HB3 |
110.7 |
110.7 |
CB |
CG |
CD |
107.8 |
101.7 |
CB |
CG |
HG2 |
110.0 |
111.0 |
CB |
CG |
HG3 |
110.0 |
111.0 |
HB2 |
CB |
HB3 |
108.2 |
110.8 |
CD |
CG |
HG2 |
110.0 |
111.0 |
CD |
CG |
HG3 |
110.0 |
111.0 |
CG |
CD |
HD2 |
111.1 |
110.3 |
CG |
CD |
HD3 |
111.1 |
110.4 |
HG2 |
CG |
HG3 |
108.9 |
110.9 |
HD2 |
CD |
HD3 |
107.8 |
110.4 |
O |
C |
OXT |
|
120.0 |
C |
OXT |
HXT |
|
117.0 |
Torsion Angles for DPR
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
CD |
N |
CA |
H |
240.0 |
237.7 |
CA |
N |
CD |
CG |
351.3 |
335.9 |
CA |
N |
CD |
HD2 |
111.3 |
94.7 |
CA |
N |
CD |
HD3 |
231.3 |
217.1 |
CB |
CA |
N |
C |
122.4 |
119.4 |
CB |
CA |
N |
HA |
239.4 |
240.6 |
N |
CA |
CB |
CG |
341.3 |
22.3 |
N |
CA |
CB |
HB2 |
101.3 |
140.7 |
N |
CA |
CB |
HB3 |
221.3 |
263.9 |
C |
CA |
N |
HA |
117.0 |
121.2 |
N |
CA |
C |
O |
67.2 |
18.6 |
N |
CA |
C |
OXT |
|
198.5 |
CA |
N |
CD |
H |
120.0 |
122.3 |
CD |
N |
CA |
CB |
17.4 |
1.0 |
CD |
N |
CA |
C |
255.0 |
241.6 |
CD |
N |
CA |
HA |
138.0 |
120.4 |
CB |
CG |
CD |
N |
356.2 |
37.1 |
N |
CD |
CG |
HG2 |
236.2 |
279.0 |
N |
CD |
CG |
HG3 |
116.1 |
155.1 |
CG |
CD |
N |
HD2 |
240.0 |
241.2 |
CG |
CD |
N |
HD3 |
120.0 |
118.9 |
HD2 |
CD |
N |
HD3 |
240.0 |
237.6 |
CA |
N |
H |
CD |
237.1 |
239.1 |
H |
N |
CA |
CB |
137.4 |
123.3 |
H |
N |
CA |
C |
15.0 |
3.9 |
H |
N |
CA |
HA |
258.0 |
242.7 |
H |
N |
CD |
CG |
231.4 |
213.6 |
H |
N |
CD |
HD2 |
351.3 |
332.4 |
H |
N |
CD |
HD3 |
111.4 |
94.7 |
CB |
CA |
N |
CD |
17.4 |
1.0 |
CB |
CA |
N |
H |
137.4 |
123.3 |
N |
CA |
CB |
C |
238.9 |
240.6 |
N |
CA |
CB |
HA |
121.9 |
119.4 |
C |
CA |
CB |
HA |
243.0 |
238.7 |
CB |
CA |
C |
O |
309.6 |
260.9 |
CB |
CA |
C |
OXT |
|
80.8 |
CG |
CB |
CA |
HB2 |
240.0 |
241.6 |
CG |
CB |
CA |
HB3 |
120.0 |
118.4 |
CA |
CB |
CG |
CD |
14.0 |
324.3 |
CA |
CB |
CG |
HG2 |
134.0 |
82.4 |
CA |
CB |
CG |
HG3 |
254.0 |
206.2 |
HB2 |
CB |
CA |
HB3 |
240.0 |
236.8 |
C |
CA |
N |
CD |
255.0 |
241.6 |
C |
CA |
N |
H |
15.0 |
3.9 |
N |
CA |
C |
CB |
117.6 |
117.7 |
N |
CA |
C |
HA |
238.1 |
238.9 |
CB |
CA |
C |
HA |
120.5 |
121.2 |
C |
CA |
CB |
CG |
102.4 |
141.7 |
C |
CA |
CB |
HB2 |
222.4 |
260.0 |
C |
CA |
CB |
HB3 |
342.4 |
23.2 |
O |
C |
CA |
OXT |
|
180.1 |
CA |
C |
OXT |
HXT |
|
180.1 |
HA |
CA |
N |
CD |
138.0 |
120.4 |
HA |
CA |
N |
H |
258.0 |
242.7 |
N |
CA |
HA |
CB |
242.8 |
242.3 |
N |
CA |
HA |
C |
120.7 |
121.1 |
CB |
CA |
HA |
C |
238.0 |
238.8 |
HA |
CA |
CB |
CG |
219.4 |
262.9 |
HA |
CA |
CB |
HB2 |
339.4 |
21.3 |
HA |
CA |
CB |
HB3 |
99.4 |
144.5 |
HA |
CA |
C |
O |
189.1 |
139.7 |
HA |
CA |
C |
OXT |
|
319.6 |
N |
CD |
CG |
CB |
356.2 |
37.1 |
CG |
CB |
CA |
C |
102.4 |
141.7 |
CG |
CB |
CA |
HA |
219.4 |
262.9 |
CA |
CB |
CG |
HB2 |
120.0 |
118.3 |
CA |
CB |
CG |
HB3 |
240.0 |
241.6 |
HB2 |
CB |
CG |
HB3 |
120.0 |
123.3 |
CD |
CG |
CB |
HG2 |
240.0 |
241.9 |
CD |
CG |
CB |
HG3 |
120.0 |
118.1 |
CB |
CG |
CD |
HD2 |
236.1 |
278.2 |
CB |
CG |
CD |
HD3 |
116.2 |
155.9 |
HG2 |
CG |
CB |
HG3 |
240.0 |
236.2 |
HB2 |
CB |
CA |
C |
222.4 |
260.0 |
HB2 |
CB |
CA |
HA |
339.4 |
21.3 |
CA |
CB |
HB2 |
CG |
242.8 |
246.4 |
CA |
CB |
HB2 |
HB3 |
121.4 |
123.2 |
CG |
CB |
HB2 |
HB3 |
238.6 |
236.8 |
HB2 |
CB |
CG |
CD |
254.0 |
206.0 |
HB2 |
CB |
CG |
HG2 |
14.0 |
324.1 |
HB2 |
CB |
CG |
HG3 |
134.0 |
87.9 |
HB3 |
CB |
CA |
C |
342.4 |
23.2 |
HB3 |
CB |
CA |
HA |
99.4 |
144.5 |
CA |
CB |
HB3 |
CG |
117.1 |
113.6 |
CA |
CB |
HB3 |
HB2 |
238.6 |
236.9 |
CG |
CB |
HB3 |
HB2 |
121.4 |
123.2 |
HB3 |
CB |
CG |
CD |
134.0 |
82.7 |
HB3 |
CB |
CG |
HG2 |
254.0 |
200.8 |
HB3 |
CB |
CG |
HG3 |
14.0 |
324.6 |
CG |
CD |
N |
H |
231.4 |
213.6 |
N |
CD |
CG |
HD2 |
120.0 |
118.8 |
N |
CD |
CG |
HD3 |
240.0 |
241.1 |
CD |
CG |
CB |
HB2 |
254.0 |
206.0 |
CD |
CG |
CB |
HB3 |
134.0 |
82.7 |
CB |
CG |
CD |
HG2 |
120.0 |
118.1 |
CB |
CG |
CD |
HG3 |
240.0 |
241.9 |
HG2 |
CG |
CD |
HG3 |
120.0 |
123.8 |
HD2 |
CD |
CG |
HD3 |
120.0 |
122.3 |
HG2 |
CG |
CB |
HB2 |
14.0 |
324.1 |
HG2 |
CG |
CB |
HB3 |
254.0 |
200.8 |
CB |
CG |
HG2 |
CD |
241.3 |
247.7 |
CB |
CG |
HG2 |
HG3 |
120.7 |
123.8 |
CD |
CG |
HG2 |
HG3 |
239.3 |
236.1 |
HG2 |
CG |
CD |
HD2 |
116.2 |
160.2 |
HG2 |
CG |
CD |
HD3 |
356.2 |
37.8 |
HG3 |
CG |
CB |
HB2 |
134.0 |
87.9 |
HG3 |
CG |
CB |
HB3 |
14.0 |
324.6 |
CB |
CG |
HG3 |
CD |
118.7 |
112.3 |
CB |
CG |
HG3 |
HG2 |
239.3 |
236.2 |
CD |
CG |
HG3 |
HG2 |
120.7 |
123.9 |
HG3 |
CG |
CD |
HD2 |
356.1 |
36.3 |
HG3 |
CG |
CD |
HD3 |
236.2 |
274.0 |
HD2 |
CD |
N |
H |
351.3 |
332.4 |
N |
CD |
HD2 |
CG |
243.9 |
244.7 |
N |
CD |
HD2 |
HD3 |
122.0 |
122.3 |
HD2 |
CD |
CG |
HG2 |
116.2 |
160.2 |
HD2 |
CD |
CG |
HG3 |
356.1 |
36.3 |
CG |
CD |
HD2 |
HD3 |
238.1 |
237.7 |
HD3 |
CD |
N |
H |
111.4 |
94.7 |
N |
CD |
HD3 |
CG |
116.1 |
115.4 |
N |
CD |
HD3 |
HD2 |
238.0 |
237.7 |
HD3 |
CD |
CG |
HG2 |
356.2 |
37.8 |
HD3 |
CD |
CG |
HG3 |
236.2 |
274.0 |
CG |
CD |
HD3 |
HD2 |
121.9 |
122.3 |
O |
C |
CA |
HA |
189.1 |
139.7 |
CA |
C |
O |
OXT |
|
179.9 |
O |
C |
OXT |
HXT |
|
0.0 |
OXT |
C |
CA |
HA |
|
319.6 |
CA |
C |
OXT |
O |
|
180.1 |