PDB Chemical Component DPP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DPP
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.452 |
1.469 |
| N |
H |
0.999 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| CA |
C |
1.513 |
1.507 |
| CA |
CB |
1.546 |
1.530 |
| CA |
HA |
1.100 |
1.090 |
| C |
O |
1.238 |
1.208 |
| C |
OXT |
1.339 |
1.342 |
| CB |
NG |
1.470 |
1.469 |
| CB |
HB2 |
1.100 |
1.090 |
| CB |
HB3 |
1.100 |
1.090 |
| NG |
HG1 |
1.000 |
1.010 |
| NG |
HG2 |
1.000 |
1.008 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for DPP
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.0 |
| N |
CA |
C |
113.8 |
109.5 |
| N |
CA |
CB |
110.8 |
109.5 |
| N |
CA |
HA |
104.6 |
109.5 |
| H |
N |
H2 |
109.5 |
111.0 |
| C |
CA |
CB |
106.3 |
109.5 |
| C |
CA |
HA |
109.2 |
109.5 |
| CA |
C |
O |
118.0 |
120.0 |
| CA |
C |
OXT |
117.7 |
120.0 |
| CB |
CA |
HA |
112.3 |
109.5 |
| CA |
CB |
NG |
104.8 |
109.5 |
| CA |
CB |
HB2 |
111.1 |
109.5 |
| CA |
CB |
HB3 |
111.1 |
109.5 |
| O |
C |
OXT |
124.2 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.1 |
| NG |
CB |
HB2 |
111.1 |
109.5 |
| NG |
CB |
HB3 |
111.1 |
109.4 |
| CB |
NG |
HG1 |
109.5 |
111.0 |
| CB |
NG |
HG2 |
109.5 |
111.0 |
| HB2 |
CB |
HB3 |
107.8 |
109.5 |
| HG1 |
NG |
HG2 |
109.4 |
111.0 |
Torsion Angles for DPP
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
240.0 |
236.1 |
| C |
CA |
N |
CB |
119.6 |
120.0 |
| C |
CA |
N |
HA |
240.9 |
240.0 |
| N |
CA |
C |
O |
314.1 |
340.0 |
| N |
CA |
C |
OXT |
131.5 |
160.0 |
| CB |
CA |
N |
HA |
121.2 |
120.0 |
| N |
CA |
CB |
NG |
280.9 |
305.0 |
| N |
CA |
CB |
HB2 |
40.9 |
65.0 |
| N |
CA |
CB |
HB3 |
160.9 |
185.0 |
| CA |
N |
H |
H2 |
120.0 |
123.9 |
| H |
N |
CA |
C |
180.0 |
296.1 |
| H |
N |
CA |
CB |
60.4 |
176.1 |
| H |
N |
CA |
HA |
299.1 |
56.1 |
| CA |
N |
H2 |
H |
240.0 |
236.1 |
| H2 |
N |
CA |
C |
300.0 |
60.0 |
| H2 |
N |
CA |
CB |
180.4 |
300.0 |
| H2 |
N |
CA |
HA |
59.1 |
180.0 |
| C |
CA |
N |
H |
180.0 |
296.1 |
| C |
CA |
N |
H2 |
300.0 |
60.0 |
| N |
CA |
C |
CB |
237.9 |
240.0 |
| N |
CA |
C |
HA |
116.5 |
120.0 |
| CB |
CA |
C |
HA |
238.6 |
240.0 |
| C |
CA |
CB |
NG |
156.8 |
185.0 |
| C |
CA |
CB |
HB2 |
276.9 |
305.0 |
| C |
CA |
CB |
HB3 |
36.9 |
65.0 |
| O |
C |
CA |
OXT |
182.6 |
180.0 |
| CA |
C |
OXT |
HXT |
182.8 |
180.0 |
| CB |
CA |
N |
H |
60.4 |
176.1 |
| CB |
CA |
N |
H2 |
180.4 |
300.0 |
| N |
CA |
CB |
C |
124.0 |
120.0 |
| N |
CA |
CB |
HA |
243.4 |
240.0 |
| C |
CA |
CB |
HA |
119.4 |
120.0 |
| CB |
CA |
C |
O |
76.2 |
100.0 |
| CB |
CA |
C |
OXT |
253.6 |
280.0 |
| NG |
CB |
CA |
HB2 |
240.0 |
240.0 |
| NG |
CB |
CA |
HB3 |
120.0 |
119.9 |
| CA |
CB |
NG |
HG1 |
180.0 |
56.0 |
| CA |
CB |
NG |
HG2 |
300.0 |
180.0 |
| HB2 |
CB |
CA |
HB3 |
240.0 |
239.9 |
| HA |
CA |
N |
H |
299.1 |
56.1 |
| HA |
CA |
N |
H2 |
59.1 |
180.0 |
| N |
CA |
HA |
C |
237.9 |
240.0 |
| N |
CA |
HA |
CB |
120.2 |
120.0 |
| C |
CA |
HA |
CB |
242.3 |
240.0 |
| HA |
CA |
C |
O |
197.6 |
220.0 |
| HA |
CA |
C |
OXT |
15.0 |
40.0 |
| HA |
CA |
CB |
NG |
37.4 |
65.0 |
| HA |
CA |
CB |
HB2 |
157.5 |
185.0 |
| HA |
CA |
CB |
HB3 |
277.4 |
305.1 |
| O |
C |
CA |
CB |
76.2 |
100.0 |
| O |
C |
CA |
HA |
197.6 |
220.0 |
| CA |
C |
O |
OXT |
177.2 |
180.0 |
| O |
C |
OXT |
HXT |
0.0 |
0.0 |
| OXT |
C |
CA |
CB |
253.6 |
280.0 |
| OXT |
C |
CA |
HA |
15.0 |
40.0 |
| CA |
C |
OXT |
O |
182.8 |
180.0 |
| NG |
CB |
CA |
HA |
37.4 |
65.0 |
| CA |
CB |
NG |
HB2 |
120.0 |
120.0 |
| CA |
CB |
NG |
HB3 |
240.0 |
240.0 |
| HB2 |
CB |
NG |
HB3 |
120.0 |
120.0 |
| HG1 |
NG |
CB |
HG2 |
240.0 |
236.0 |
| HB2 |
CB |
CA |
HA |
157.5 |
185.0 |
| CA |
CB |
HB2 |
NG |
243.8 |
240.0 |
| CA |
CB |
HB2 |
HB3 |
121.9 |
120.0 |
| NG |
CB |
HB2 |
HB3 |
238.1 |
240.0 |
| HB2 |
CB |
NG |
HG1 |
60.0 |
296.0 |
| HB2 |
CB |
NG |
HG2 |
180.0 |
60.0 |
| HB3 |
CB |
CA |
HA |
277.4 |
305.1 |
| CA |
CB |
HB3 |
NG |
116.2 |
120.0 |
| CA |
CB |
HB3 |
HB2 |
238.1 |
240.0 |
| NG |
CB |
HB3 |
HB2 |
121.9 |
120.0 |
| HB3 |
CB |
NG |
HG1 |
300.0 |
176.0 |
| HB3 |
CB |
NG |
HG2 |
60.0 |
300.0 |
| HG1 |
NG |
CB |
HB2 |
60.0 |
296.0 |
| HG1 |
NG |
CB |
HB3 |
300.0 |
176.0 |
| CB |
NG |
HG1 |
HG2 |
120.0 |
124.0 |
| HG2 |
NG |
CB |
HB2 |
180.0 |
60.0 |
| HG2 |
NG |
CB |
HB3 |
60.0 |
300.0 |
| CB |
NG |
HG2 |
HG1 |
240.0 |
236.1 |