PDB Chemical Component DPN
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DPN
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.482 |
1.469 |
| N |
H |
0.999 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| CA |
C |
1.531 |
1.507 |
| CA |
CB |
1.521 |
1.530 |
| CA |
HA |
1.100 |
1.090 |
| C |
O |
1.239 |
1.209 |
| C |
OXT |
1.330 |
1.342 |
| OXT |
HXT |
0.950 |
0.967 |
| CB |
CG |
1.497 |
1.507 |
| CB |
HB2 |
1.100 |
1.089 |
| CB |
HB3 |
1.100 |
1.091 |
| CG |
CD1 |
1.388 |
1.381 |
| CG |
CD2 |
1.394 |
1.383 |
| CD1 |
CE1 |
1.388 |
1.382 |
| CD1 |
HD1 |
1.080 |
1.080 |
| CD2 |
CE2 |
1.387 |
1.382 |
| CD2 |
HD2 |
1.080 |
1.080 |
| CE1 |
CZ |
1.394 |
1.382 |
| CE1 |
HE1 |
1.080 |
1.080 |
| CE2 |
CZ |
1.389 |
1.383 |
| CE2 |
HE2 |
1.080 |
1.080 |
| CZ |
HZ |
1.080 |
1.080 |
Bond Angles for DPN
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.0 |
| N |
CA |
C |
111.0 |
109.5 |
| N |
CA |
CB |
109.4 |
109.5 |
| N |
CA |
HA |
109.1 |
109.5 |
| H |
N |
H2 |
109.5 |
111.0 |
| C |
CA |
CB |
110.3 |
109.5 |
| C |
CA |
HA |
108.4 |
109.5 |
| CA |
C |
O |
120.7 |
120.0 |
| CA |
C |
OXT |
115.8 |
120.1 |
| CB |
CA |
HA |
108.6 |
109.4 |
| CA |
CB |
CG |
113.8 |
109.4 |
| CA |
CB |
HB2 |
108.4 |
109.5 |
| CA |
CB |
HB3 |
108.4 |
109.4 |
| O |
C |
OXT |
123.5 |
119.9 |
| C |
OXT |
HXT |
109.5 |
117.1 |
| CG |
CB |
HB2 |
108.4 |
109.5 |
| CG |
CB |
HB3 |
108.4 |
109.5 |
| CB |
CG |
CD1 |
120.4 |
120.0 |
| CB |
CG |
CD2 |
120.7 |
120.0 |
| HB2 |
CB |
HB3 |
109.5 |
109.5 |
| CD1 |
CG |
CD2 |
118.9 |
120.0 |
| CG |
CD1 |
CE1 |
120.7 |
120.0 |
| CG |
CD1 |
HD1 |
119.6 |
120.0 |
| CG |
CD2 |
CE2 |
121.0 |
120.0 |
| CG |
CD2 |
HD2 |
119.5 |
120.0 |
| CE1 |
CD1 |
HD1 |
119.6 |
120.0 |
| CD1 |
CE1 |
CZ |
119.7 |
120.0 |
| CD1 |
CE1 |
HE1 |
120.1 |
120.0 |
| CE2 |
CD2 |
HD2 |
119.5 |
120.0 |
| CD2 |
CE2 |
CZ |
119.5 |
120.0 |
| CD2 |
CE2 |
HE2 |
120.2 |
120.0 |
| CZ |
CE1 |
HE1 |
120.1 |
120.0 |
| CE1 |
CZ |
CE2 |
120.1 |
120.0 |
| CE1 |
CZ |
HZ |
120.0 |
120.0 |
| CZ |
CE2 |
HE2 |
120.2 |
120.0 |
| CE2 |
CZ |
HZ |
119.9 |
120.0 |
Torsion Angles for DPN
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
240.0 |
236.1 |
| C |
CA |
N |
CB |
238.0 |
240.0 |
| C |
CA |
N |
HA |
119.4 |
120.0 |
| N |
CA |
C |
O |
10.4 |
20.0 |
| N |
CA |
C |
OXT |
190.2 |
200.0 |
| CB |
CA |
N |
HA |
241.4 |
240.0 |
| N |
CA |
CB |
CG |
306.7 |
65.0 |
| N |
CA |
CB |
HB2 |
67.3 |
185.1 |
| N |
CA |
CB |
HB3 |
186.0 |
305.0 |
| CA |
N |
H |
H2 |
120.0 |
123.9 |
| H |
N |
CA |
C |
180.0 |
300.0 |
| H |
N |
CA |
CB |
302.0 |
60.0 |
| H |
N |
CA |
HA |
60.6 |
180.0 |
| CA |
N |
H2 |
H |
240.0 |
236.0 |
| H2 |
N |
CA |
C |
300.0 |
63.9 |
| H2 |
N |
CA |
CB |
62.0 |
183.9 |
| H2 |
N |
CA |
HA |
180.6 |
303.9 |
| C |
CA |
N |
H |
180.0 |
300.0 |
| C |
CA |
N |
H2 |
300.0 |
63.9 |
| N |
CA |
C |
CB |
121.4 |
120.0 |
| N |
CA |
C |
HA |
240.2 |
240.0 |
| CB |
CA |
C |
HA |
118.8 |
119.9 |
| C |
CA |
CB |
CG |
69.0 |
185.0 |
| C |
CA |
CB |
HB2 |
189.7 |
305.1 |
| C |
CA |
CB |
HB3 |
308.4 |
65.0 |
| O |
C |
CA |
OXT |
180.2 |
180.0 |
| CA |
C |
OXT |
HXT |
180.1 |
180.0 |
| CB |
CA |
N |
H |
302.0 |
60.0 |
| CB |
CA |
N |
H2 |
62.0 |
183.9 |
| N |
CA |
CB |
C |
237.6 |
240.0 |
| N |
CA |
CB |
HA |
118.9 |
120.0 |
| C |
CA |
CB |
HA |
241.3 |
240.1 |
| CB |
CA |
C |
O |
249.0 |
260.0 |
| CB |
CA |
C |
OXT |
68.8 |
80.0 |
| CG |
CB |
CA |
HB2 |
239.4 |
240.0 |
| CG |
CB |
CA |
HB3 |
120.6 |
120.0 |
| CA |
CB |
CG |
CD1 |
95.8 |
90.0 |
| CA |
CB |
CG |
CD2 |
274.9 |
269.8 |
| HB2 |
CB |
CA |
HB3 |
241.3 |
240.0 |
| HA |
CA |
N |
H |
60.6 |
180.0 |
| HA |
CA |
N |
H2 |
180.6 |
303.9 |
| N |
CA |
HA |
C |
121.0 |
120.0 |
| N |
CA |
HA |
CB |
240.9 |
240.0 |
| C |
CA |
HA |
CB |
119.9 |
119.9 |
| HA |
CA |
C |
O |
130.2 |
140.1 |
| HA |
CA |
C |
OXT |
310.1 |
320.0 |
| HA |
CA |
CB |
CG |
187.7 |
305.0 |
| HA |
CA |
CB |
HB2 |
308.3 |
65.0 |
| HA |
CA |
CB |
HB3 |
67.1 |
185.0 |
| O |
C |
CA |
CB |
249.0 |
260.0 |
| O |
C |
CA |
HA |
130.2 |
140.1 |
| CA |
C |
O |
OXT |
179.8 |
180.0 |
| O |
C |
OXT |
HXT |
360.0 |
360.0 |
| OXT |
C |
CA |
CB |
68.8 |
80.0 |
| OXT |
C |
CA |
HA |
310.1 |
320.0 |
| CA |
C |
OXT |
O |
180.2 |
180.0 |
| CG |
CB |
CA |
HA |
187.7 |
305.0 |
| CA |
CB |
CG |
HB2 |
120.6 |
120.0 |
| CA |
CB |
CG |
HB3 |
239.4 |
240.1 |
| HB2 |
CB |
CG |
HB3 |
118.8 |
120.0 |
| CD1 |
CG |
CB |
CD2 |
180.9 |
180.3 |
| CB |
CG |
CD1 |
CE1 |
179.1 |
180.0 |
| CB |
CG |
CD1 |
HD1 |
359.0 |
360.0 |
| CB |
CG |
CD2 |
CE2 |
180.9 |
180.1 |
| CB |
CG |
CD2 |
HD2 |
0.9 |
359.9 |
| HB2 |
CB |
CA |
HA |
308.3 |
65.0 |
| CA |
CB |
HB2 |
CG |
236.1 |
240.0 |
| CA |
CB |
HB2 |
HB3 |
118.0 |
119.9 |
| CG |
CB |
HB2 |
HB3 |
241.9 |
240.0 |
| HB2 |
CB |
CG |
CD1 |
335.2 |
330.0 |
| HB2 |
CB |
CG |
CD2 |
154.3 |
149.7 |
| HB3 |
CB |
CA |
HA |
67.1 |
185.0 |
| CA |
CB |
HB3 |
CG |
123.9 |
120.0 |
| CA |
CB |
HB3 |
HB2 |
242.0 |
240.0 |
| CG |
CB |
HB3 |
HB2 |
118.1 |
120.1 |
| HB3 |
CB |
CG |
CD1 |
216.4 |
210.0 |
| HB3 |
CB |
CG |
CD2 |
35.5 |
29.7 |
| CD1 |
CG |
CB |
HB2 |
335.2 |
330.0 |
| CD1 |
CG |
CB |
HB3 |
216.4 |
210.0 |
| CB |
CG |
CD1 |
CD2 |
179.1 |
179.7 |
| CD1 |
CG |
CD2 |
CE2 |
0.0 |
359.8 |
| CD1 |
CG |
CD2 |
HD2 |
180.1 |
179.7 |
| CE1 |
CD1 |
CG |
HD1 |
180.0 |
180.0 |
| CG |
CD1 |
CE1 |
CZ |
360.0 |
360.0 |
| CG |
CD1 |
CE1 |
HE1 |
180.0 |
179.9 |
| CD2 |
CG |
CB |
HB2 |
154.3 |
149.7 |
| CD2 |
CG |
CB |
HB3 |
35.5 |
29.7 |
| CB |
CG |
CD2 |
CD1 |
180.9 |
180.3 |
| CD2 |
CG |
CD1 |
CE1 |
359.9 |
0.3 |
| CD2 |
CG |
CD1 |
HD1 |
179.9 |
180.2 |
| CE2 |
CD2 |
CG |
HD2 |
180.0 |
180.1 |
| CG |
CD2 |
CE2 |
CZ |
0.1 |
359.9 |
| CG |
CD2 |
CE2 |
HE2 |
180.1 |
180.0 |
| CE1 |
CD1 |
CG |
CD2 |
359.9 |
0.3 |
| CG |
CD1 |
CE1 |
HD1 |
180.0 |
180.0 |
| CZ |
CE1 |
CD1 |
HE1 |
180.0 |
180.0 |
| CD1 |
CE1 |
CZ |
CE2 |
0.1 |
359.8 |
| CD1 |
CE1 |
CZ |
HZ |
180.1 |
180.0 |
| HD1 |
CD1 |
CG |
CD2 |
179.9 |
180.2 |
| CG |
CD1 |
HD1 |
CE1 |
180.0 |
180.0 |
| HD1 |
CD1 |
CE1 |
CZ |
180.0 |
180.0 |
| HD1 |
CD1 |
CE1 |
HE1 |
360.0 |
360.0 |
| CG |
CD2 |
CE2 |
HD2 |
180.0 |
179.9 |
| CE1 |
CZ |
CE2 |
CD2 |
359.9 |
0.3 |
| CZ |
CE2 |
CD2 |
HE2 |
180.0 |
180.0 |
| CD2 |
CE2 |
CZ |
HZ |
179.8 |
180.0 |
| CG |
CD2 |
HD2 |
CE2 |
180.0 |
180.1 |
| HD2 |
CD2 |
CE2 |
CZ |
180.1 |
180.1 |
| HD2 |
CD2 |
CE2 |
HE2 |
0.1 |
0.1 |
| CZ |
CE1 |
CD1 |
HD1 |
180.0 |
180.0 |
| CD1 |
CE1 |
CZ |
HE1 |
180.0 |
180.0 |
| CD2 |
CE2 |
CZ |
CE1 |
359.9 |
0.3 |
| CE1 |
CZ |
CE2 |
HE2 |
179.9 |
180.3 |
| CE2 |
CZ |
CE1 |
HZ |
180.0 |
179.7 |
| HE1 |
CE1 |
CD1 |
HD1 |
360.0 |
360.0 |
| CD1 |
CE1 |
HE1 |
CZ |
180.0 |
180.0 |
| HE1 |
CE1 |
CZ |
CE2 |
180.1 |
179.8 |
| HE1 |
CE1 |
CZ |
HZ |
0.2 |
0.0 |
| CZ |
CE2 |
CD2 |
HD2 |
180.1 |
180.1 |
| CD2 |
CE2 |
CZ |
HE2 |
180.0 |
180.0 |
| CE2 |
CZ |
CE1 |
HE1 |
180.1 |
179.8 |
| CE1 |
CZ |
CE2 |
HZ |
180.0 |
180.3 |
| HE2 |
CE2 |
CD2 |
HD2 |
0.1 |
0.1 |
| CD2 |
CE2 |
HE2 |
CZ |
180.0 |
180.0 |
| HE2 |
CE2 |
CZ |
HZ |
359.8 |
0.0 |
| HZ |
CZ |
CE1 |
HE1 |
0.2 |
0.0 |
| CE1 |
CZ |
HZ |
CE2 |
180.0 |
179.7 |
| HZ |
CZ |
CE2 |
HE2 |
359.8 |
0.0 |