PDB Chemical Component DPM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DPM

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1A C2A 1.421 1.349
C1A CHA 1.499 1.507
C1A NA 1.431 1.364
C2A C3A 1.390 1.409
C2A C5A 1.514 1.507
C3A C4A 1.418 1.349
C3A C7A 1.536 1.507
C4A NA 1.401 1.363
C4A CHB 1.437 1.506
C5A C6A 1.548 1.507
C6A O1A 1.217 1.209
C6A O2A 1.273 1.342
C7A C8A 1.478 1.529
C8A C9A 1.577 1.507
C9A O3A 1.264 1.208
C9A O4A 1.268 1.343
C1B C2B 1.462 1.347
C1B CHB 1.405 1.508
C1B NB 1.418 1.364
C2B C3B 1.406 1.409
C2B C5B 1.519 1.508
C3B C4B 1.429 1.349
C3B C7B 1.542 1.507
C4B NB 1.440 1.363
C5B C6B 1.568 1.507
C6B O1B 1.253 1.209
C6B O2B 1.270 1.342
C7B C8B 1.540 1.530
C8B C9B 1.579 1.507
C9B O3B 1.228 1.209
C9B O4B 1.235 1.342
C5A H5A1 1.100 1.090
C5A H5A2 1.100 1.090
C7A H7A1 1.100 1.090
C7A H7A2 1.101 1.090
C8A H8A1 1.100 1.090
C8A H8A2 1.100 1.090
CHA HCA1 1.100 1.090
CHA HCA2 1.100 1.090
CHA HCA3 1.100 1.091
NA H10 1.000 0.970
O2A HOA2 0.950 0.967
O4A HOA4 0.950 0.967
C4B H4B1 1.080 1.080
C5B H5B1 1.100 1.090
C5B H5B2 1.100 1.091
C7B H7B1 1.100 1.090
C7B H7B2 1.100 1.089
C8B H8B1 1.100 1.090
C8B H8B2 1.100 1.089
CHB HCB1 1.100 1.090
CHB HCB2 1.100 1.090
NB H22 1.000 0.970
O2B HOB2 0.950 0.967
O4B HOB4 0.950 0.967

Bond Angles for DPM

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2A C1A CHA 130.2 125.9
C2A C1A NA 108.8 108.2
C1A C2A C3A 107.4 107.4
C1A C2A C5A 127.1 126.3
CHA C1A NA 120.8 125.9
C1A CHA HCA1 109.5 109.5
C1A CHA HCA2 109.5 109.4
C1A CHA HCA3 109.5 109.5
C1A NA C4A 106.0 108.8
C1A NA H10 127.0 125.6
C3A C2A C5A 125.4 126.3
C2A C3A C4A 108.4 107.4
C2A C3A C7A 128.8 126.3
C2A C5A C6A 113.5 109.5
C2A C5A H5A1 108.5 109.4
C2A C5A H5A2 108.4 109.5
C4A C3A C7A 122.4 126.3
C3A C4A NA 109.3 108.2
C3A C4A CHB 122.9 125.9
C3A C7A C8A 112.9 109.5
C3A C7A H7A1 108.6 109.5
C3A C7A H7A2 108.6 109.5
NA C4A CHB 126.8 125.9
C4A NA H10 127.0 125.6
C4A CHB C1B 124.9 109.5
C4A CHB HCB1 105.5 109.5
C4A CHB HCB2 105.5 109.5
C5A C6A O1A 124.8 120.0
C5A C6A O2A 117.0 120.0
C6A C5A H5A1 108.5 109.4
C6A C5A H5A2 108.5 109.5
O1A C6A O2A 118.2 120.0
C6A O2A HOA2 109.5 117.0
C7A C8A C9A 105.6 109.4
C8A C7A H7A1 108.6 109.5
C8A C7A H7A2 108.6 109.4
C7A C8A H8A1 110.4 109.5
C7A C8A H8A2 110.4 109.4
C8A C9A O3A 115.1 120.0
C8A C9A O4A 128.5 120.0
C9A C8A H8A1 110.4 109.5
C9A C8A H8A2 110.4 109.5
O3A C9A O4A 115.8 120.0
C9A O4A HOA4 109.5 117.0
C2B C1B CHB 122.7 125.9
C2B C1B NB 107.2 108.2
C1B C2B C3B 106.9 107.5
C1B C2B C5B 124.1 126.3
CHB C1B NB 130.1 125.9
C1B CHB HCB1 105.5 109.5
C1B CHB HCB2 105.5 109.5
C1B NB C4B 109.3 108.7
C1B NB H22 125.3 125.7
C3B C2B C5B 129.0 126.2
C2B C3B C4B 110.4 107.4
C2B C3B C7B 123.1 126.3
C2B C5B C6B 114.0 109.5
C2B C5B H5B1 108.3 109.5
C2B C5B H5B2 108.3 109.4
C4B C3B C7B 126.3 126.3
C3B C4B NB 106.1 108.2
C3B C4B H4B1 127.0 125.9
C3B C7B C8B 104.3 109.5
C3B C7B H7B1 110.8 109.4
C3B C7B H7B2 110.7 109.4
NB C4B H4B1 126.9 125.9
C4B NB H22 125.3 125.6
C5B C6B O1B 124.0 120.0
C5B C6B O2B 121.9 120.0
C6B C5B H5B1 108.3 109.5
C6B C5B H5B2 108.3 109.5
O1B C6B O2B 114.0 120.0
C6B O2B HOB2 109.5 117.0
C7B C8B C9B 112.6 109.4
C8B C7B H7B1 110.7 109.5
C8B C7B H7B2 110.8 109.5
C7B C8B H8B1 108.7 109.5
C7B C8B H8B2 108.6 109.5
C8B C9B O3B 114.6 120.0
C8B C9B O4B 123.6 120.0
C9B C8B H8B1 108.7 109.4
C9B C8B H8B2 108.7 109.5
O3B C9B O4B 121.3 120.0
C9B O4B HOB4 109.5 117.0
H5A1 C5A H5A2 109.5 109.5
H7A1 C7A H7A2 109.5 109.5
H8A1 C8A H8A2 109.5 109.5
HCA1 CHA HCA2 109.5 109.5
HCA1 CHA HCA3 109.4 109.5
HCA2 CHA HCA3 109.5 109.4
H5B1 C5B H5B2 109.5 109.5
H7B1 C7B H7B2 109.5 109.5
H8B1 C8B H8B2 109.5 109.5
HCB1 CHB HCB2 109.5 109.5

Torsion Angles for DPM

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CHA C1A C2A NA 185.2 180.3
C2A C1A CHA HCA1 86.6 90.0
C2A C1A CHA HCA2 206.7 210.0
C2A C1A CHA HCA3 326.7 329.9
C2A C1A NA C4A 1.9 0.4
C2A C1A NA H10 181.9 180.0
C3A C2A C1A C5A 179.8 180.0
C1A C2A C3A C4A 358.7 360.0
C1A C2A C3A C7A 171.4 180.0
C1A C2A C5A C6A 89.5 90.0
C1A C2A C5A H5A1 210.1 210.0
C1A C2A C5A H5A2 328.9 329.9
C2A C1A CHA NA 174.3 179.6
CHA C1A C2A C3A 184.8 180.1
CHA C1A C2A C5A 4.9 0.1
CHA C1A NA C4A 177.3 180.1
CHA C1A NA H10 357.3 359.7
HCA1 CHA C1A HCA2 240.0 240.0
HCA1 CHA C1A HCA3 120.0 120.1
HCA2 CHA C1A HCA3 240.0 240.1
C2A C1A NA CHA 184.6 180.3
NA C1A C2A C3A 359.6 359.7
NA C1A C2A C5A 179.8 179.7
NA C1A CHA HCA1 272.3 270.3
NA C1A CHA HCA2 32.4 30.4
NA C1A CHA HCA3 152.4 150.3
C3A C4A NA C1A 357.3 359.5
C1A NA C4A CHB 188.5 179.9
C4A NA C1A H10 180.0 180.4
C3A C2A C1A CHA 184.8 180.1
C3A C2A C1A NA 359.6 359.7
C1A C2A C3A C5A 180.1 180.0
C3A C2A C5A C6A 269.7 270.0
C3A C2A C5A H5A1 30.3 30.0
C3A C2A C5A H5A2 149.1 149.9
C4A C3A C2A C7A 187.3 179.9
C2A C3A C4A NA 2.5 0.3
C2A C3A C4A CHB 171.9 180.0
C2A C3A C7A C8A 97.6 90.0
C2A C3A C7A H7A1 218.1 210.0
C2A C3A C7A H7A2 337.1 330.0
C5A C2A C1A CHA 4.9 0.1
C5A C2A C1A NA 179.8 179.7
C1A C2A C5A C3A 179.8 180.0
C5A C2A C3A C4A 178.6 180.0
C5A C2A C3A C7A 351.2 0.0
C2A C5A C6A O1A 7.0 359.9
C2A C5A C6A O2A 186.2 180.0
C6A C5A C2A H5A1 239.4 240.1
C6A C5A C2A H5A2 120.6 120.1
H5A1 C5A C2A H5A2 241.2 240.0
C1A NA C4A C3A 357.3 359.5
C4A C3A C2A C5A 178.6 180.0
C2A C3A C4A C7A 173.2 180.1
C4A C3A C7A C8A 269.4 270.0
C4A C3A C7A H7A1 29.9 30.1
C4A C3A C7A H7A2 148.8 150.1
NA C4A C3A CHB 190.7 180.3
C3A C4A NA H10 177.3 180.0
C3A C4A CHB C1B 171.4 85.1
C3A C4A CHB HCB1 293.5 205.1
C3A C4A CHB HCB2 49.4 325.1
C7A C3A C2A C5A 351.2 0.0
C2A C3A C7A C4A 188.3 179.9
C7A C3A C4A NA 189.3 180.2
C7A C3A C4A CHB 358.6 359.9
C3A C7A C8A C9A 186.7 180.0
C8A C7A C3A H7A1 239.5 240.0
C8A C7A C3A H7A2 120.5 120.0
C3A C7A C8A H8A1 306.1 300.0
C3A C7A C8A H8A2 67.3 60.0
H7A1 C7A C3A H7A2 241.0 240.0
C1A NA C4A H10 180.0 179.6
NA C4A C3A C7A 189.3 180.2
C3A C4A NA CHB 168.8 179.7
NA C4A CHB C1B 338.8 264.7
NA C4A CHB HCB1 100.9 24.7
NA C4A CHB HCB2 216.8 144.7
CHB C4A C3A C7A 358.6 359.9
C3A C4A CHB NA 192.6 180.4
CHB C4A NA H10 8.5 0.3
C2B C1B CHB C4A 187.3 85.0
C4A CHB C1B NB 6.3 265.3
C1B CHB C4A HCB1 237.9 240.0
C1B CHB C4A HCB2 122.0 120.0
HCB1 CHB C4A HCB2 244.1 240.0
C2A C5A C6A H5A1 120.6 119.9
C2A C5A C6A H5A2 239.4 239.9
O1A C6A C5A O2A 180.8 179.9
C5A C6A O2A HOA2 180.8 179.9
H5A1 C5A C6A H5A2 118.8 120.0
C5A C6A O1A O2A 179.2 180.1
O1A C6A C5A H5A1 246.4 240.0
O1A C6A C5A H5A2 127.6 120.0
O1A C6A O2A HOA2 0.0 0.0
C5A C6A O2A O1A 180.8 179.9
O2A C6A C5A H5A1 65.6 60.1
O2A C6A C5A H5A2 306.8 300.1
C3A C7A C8A H7A1 120.5 120.0
C3A C7A C8A H7A2 239.5 240.0
C7A C8A C9A O3A 150.4 0.0
C7A C8A C9A O4A 321.1 180.0
C9A C8A C7A H8A1 240.6 240.0
C9A C8A C7A H8A2 119.4 120.0
H7A1 C7A C8A H7A2 119.0 120.0
H8A1 C8A C7A H8A2 238.8 240.0
C9A C8A C7A H7A1 66.2 60.0
C9A C8A C7A H7A2 307.2 300.0
C7A C8A C9A H8A1 119.4 120.0
C7A C8A C9A H8A2 240.6 240.0
O3A C9A C8A O4A 189.3 180.0
C8A C9A O4A HOA4 189.4 180.0
H8A1 C8A C9A H8A2 121.2 120.0
C8A C9A O3A O4A 171.9 180.0
O3A C9A C8A H8A1 31.0 240.0
O3A C9A C8A H8A2 269.8 120.0
O3A C9A O4A HOA4 0.0 360.0
C8A C9A O4A O3A 189.4 180.0
O4A C9A C8A H8A1 201.7 60.0
O4A C9A C8A H8A2 80.5 300.0
C4A CHB C1B C2B 187.3 85.0
CHB C1B C2B NB 179.2 180.3
C2B C1B CHB HCB1 65.2 325.0
C2B C1B CHB HCB2 309.4 205.0
C2B C1B NB C4B 0.0 0.4
C2B C1B NB H22 180.0 179.9
C3B C2B C1B C5B 179.9 180.0
C1B C2B C3B C4B 1.7 360.0
C1B C2B C3B C7B 186.8 180.0
C1B C2B C5B C6B 266.9 90.0
C1B C2B C5B H5B1 27.5 210.0
C1B C2B C5B H5B2 146.2 330.0
C4A CHB C1B HCB1 122.1 120.0
C4A CHB C1B HCB2 237.9 240.0
C2B C1B CHB NB 181.0 179.7
CHB C1B C2B C3B 178.1 180.0
CHB C1B C2B C5B 358.2 360.0
CHB C1B NB C4B 180.9 180.2
CHB C1B NB H22 0.9 359.7
HCB1 CHB C1B HCB2 115.9 120.0
C2B C1B NB CHB 179.1 180.3
NB C1B C2B C3B 358.9 359.7
NB C1B C2B C5B 179.0 179.7
NB C1B CHB HCB1 244.2 145.3
NB C1B CHB HCB2 128.4 25.3
C3B C4B NB C1B 1.0 359.6
C1B NB C4B H4B1 181.0 179.8
C4B NB C1B H22 180.0 180.5
C3B C2B C1B CHB 178.1 180.0
C3B C2B C1B NB 358.9 359.7
C1B C2B C3B C5B 180.1 180.0
C3B C2B C5B C6B 87.0 269.9
C3B C2B C5B H5B1 207.7 30.0
C3B C2B C5B H5B2 326.3 150.0
C4B C3B C2B C7B 174.9 180.0
C2B C3B C4B NB 358.3 0.3
C2B C3B C4B H4B1 178.3 180.0
C2B C3B C7B C8B 89.0 85.0
C2B C3B C7B H7B1 208.2 205.0
C2B C3B C7B H7B2 329.9 324.9
C5B C2B C1B CHB 358.2 360.0
C5B C2B C1B NB 179.0 179.7
C1B C2B C5B C3B 179.9 180.1
C5B C2B C3B C4B 181.6 180.0
C5B C2B C3B C7B 6.7 0.0
C2B C5B C6B O1B 141.6 0.0
C2B C5B C6B O2B 316.8 180.0
C6B C5B C2B H5B1 239.3 239.9
C6B C5B C2B H5B2 120.7 120.0
H5B1 C5B C2B H5B2 241.3 240.0
C1B NB C4B C3B 1.0 359.6
C4B C3B C2B C5B 181.6 180.0
C2B C3B C4B C7B 185.3 180.0
C4B C3B C7B C8B 274.9 265.0
C4B C3B C7B H7B1 34.1 25.0
C4B C3B C7B H7B2 155.7 145.0
NB C4B C3B H4B1 180.0 180.2
C3B C4B NB H22 181.0 180.0
C7B C3B C2B C5B 6.7 0.0
C2B C3B C7B C4B 174.1 180.0
C7B C3B C4B NB 173.0 180.3
C7B C3B C4B H4B1 353.0 0.0
C3B C7B C8B C9B 165.5 180.0
C8B C7B C3B H7B1 240.8 240.0
C8B C7B C3B H7B2 119.2 120.1
C3B C7B C8B H8B1 286.0 299.9
C3B C7B C8B H8B2 45.1 60.0
H7B1 C7B C3B H7B2 238.3 240.1
C1B NB C4B H22 180.0 179.5
NB C4B C3B C7B 173.0 180.3
C3B C4B NB H4B1 180.0 179.8
C2B C5B C6B H5B1 120.7 120.0
C2B C5B C6B H5B2 239.3 240.1
O1B C6B C5B O2B 184.7 180.0
C5B C6B O2B HOB2 184.3 180.0
H5B1 C5B C6B H5B2 118.6 120.0
C5B C6B O1B O2B 175.6 180.0
O1B C6B C5B H5B1 20.9 240.0
O1B C6B C5B H5B2 262.3 120.0
O1B C6B O2B HOB2 0.0 360.0
C5B C6B O2B O1B 184.3 180.0
O2B C6B C5B H5B1 196.2 60.0
O2B C6B C5B H5B2 77.5 299.9
C3B C7B C8B H7B1 119.2 120.0
C3B C7B C8B H7B2 240.9 240.0
C7B C8B C9B O3B 301.8 359.9
C7B C8B C9B O4B 130.0 180.0
C9B C8B C7B H8B1 239.5 240.2
C9B C8B C7B H8B2 120.5 120.0
H7B1 C7B C8B H7B2 121.7 120.0
H8B1 C8B C7B H8B2 241.0 239.9
C9B C8B C7B H7B1 46.4 60.1
C9B C8B C7B H7B2 284.7 300.0
C7B C8B C9B H8B1 120.5 119.9
C7B C8B C9B H8B2 239.6 239.9
O3B C9B C8B O4B 171.9 179.9
C8B C9B O4B HOB4 171.3 179.9
H8B1 C8B C9B H8B2 119.1 120.0
C8B C9B O3B O4B 187.9 180.1
O3B C9B C8B H8B1 181.4 240.0
O3B C9B C8B H8B2 62.3 120.0
O3B C9B O4B HOB4 360.0 0.0
C8B C9B O4B O3B 171.3 179.9
O4B C9B C8B H8B1 9.5 60.1
O4B C9B C8B H8B2 250.4 300.1
C2A C5A H5A1 C6A 236.4 240.0
C2A C5A H5A1 H5A2 118.2 120.0
H5A1 C5A C6A O1A 246.4 240.0
H5A1 C5A C6A O2A 65.6 60.1
C6A C5A H5A1 H5A2 241.8 240.0
C2A C5A H5A2 C6A 123.6 120.1
C2A C5A H5A2 H5A1 241.8 240.0
H5A2 C5A C6A O1A 127.6 120.0
H5A2 C5A C6A O2A 306.8 300.1
C6A C5A H5A2 H5A1 118.2 119.9
C3A C7A H7A1 C8A 236.8 240.0
C3A C7A H7A1 H7A2 118.4 120.0
H7A1 C7A C8A C9A 66.2 60.0
C8A C7A H7A1 H7A2 241.6 240.0
H7A1 C7A C8A H8A1 185.6 180.0
H7A1 C7A C8A H8A2 306.8 300.0
C3A C7A H7A2 C8A 123.2 120.0
C3A C7A H7A2 H7A1 241.6 240.0
H7A2 C7A C8A C9A 307.2 300.0
C8A C7A H7A2 H7A1 118.4 120.0
H7A2 C7A C8A H8A1 66.6 60.0
H7A2 C7A C8A H8A2 187.8 180.0
C7A C8A H8A1 C9A 243.5 240.0
H8A1 C8A C7A H7A1 185.6 180.0
H8A1 C8A C7A H7A2 66.6 60.0
C7A C8A H8A1 H8A2 121.8 120.0
H8A1 C8A C9A O3A 31.0 240.0
H8A1 C8A C9A O4A 201.7 60.0
C9A C8A H8A1 H8A2 238.2 240.0
C7A C8A H8A2 C9A 116.5 120.0
H8A2 C8A C7A H7A1 306.8 300.0
H8A2 C8A C7A H7A2 187.8 180.0
C7A C8A H8A2 H8A1 238.2 240.0
H8A2 C8A C9A O3A 269.8 120.0
H8A2 C8A C9A O4A 80.5 300.0
C9A C8A H8A2 H8A1 121.8 120.0
HCA1 CHA C1A NA 272.3 270.3
C1A CHA HCA1 HCA2 120.0 120.0
C1A CHA HCA1 HCA3 240.0 240.0
HCA2 CHA HCA1 HCA3 120.0 120.0
HCA2 CHA C1A NA 32.4 30.4
C1A CHA HCA2 HCA1 240.0 240.0
C1A CHA HCA2 HCA3 120.0 120.0
HCA1 CHA HCA2 HCA3 240.0 240.0
HCA3 CHA C1A NA 152.4 150.3
C1A CHA HCA3 HCA1 120.0 120.1
C1A CHA HCA3 HCA2 240.0 240.1
HCA1 CHA HCA3 HCA2 120.0 120.0
C1A NA H10 C4A 180.0 180.5
H10 NA C4A CHB 8.5 0.3
H4B1 C4B C3B C7B 353.0 0.0
C3B C4B H4B1 NB 180.0 180.3
H4B1 C4B NB H22 1.0 0.3
C2B C5B H5B1 C6B 235.9 240.0
C2B C5B H5B1 H5B2 118.0 119.9
H5B1 C5B C6B O1B 20.9 240.0
H5B1 C5B C6B O2B 196.2 60.0
C6B C5B H5B1 H5B2 242.1 240.0
C2B C5B H5B2 C6B 124.2 120.0
C2B C5B H5B2 H5B1 242.0 240.0
H5B2 C5B C6B O1B 262.3 120.0
H5B2 C5B C6B O2B 77.5 299.9
C6B C5B H5B2 H5B1 117.9 120.1
C3B C7B H7B1 C8B 244.8 240.0
C3B C7B H7B1 H7B2 122.4 119.9
H7B1 C7B C8B C9B 46.4 60.1
C8B C7B H7B1 H7B2 237.6 239.9
H7B1 C7B C8B H8B1 166.9 179.9
H7B1 C7B C8B H8B2 285.9 300.0
C3B C7B H7B2 C8B 115.2 120.0
C3B C7B H7B2 H7B1 237.6 240.1
H7B2 C7B C8B C9B 284.7 300.0
C8B C7B H7B2 H7B1 122.4 120.1
H7B2 C7B C8B H8B1 45.2 59.9
H7B2 C7B C8B H8B2 164.2 180.0
C7B C8B H8B1 C9B 237.1 240.1
H8B1 C8B C7B H7B1 166.9 179.9
H8B1 C8B C7B H7B2 45.2 59.9
C7B C8B H8B1 H8B2 118.5 120.1
H8B1 C8B C9B O3B 181.4 240.0
H8B1 C8B C9B O4B 9.5 60.1
C9B C8B H8B1 H8B2 241.4 240.0
C7B C8B H8B2 C9B 122.9 120.0
H8B2 C8B C7B H7B1 285.9 300.0
H8B2 C8B C7B H7B2 164.2 180.0
C7B C8B H8B2 H8B1 241.5 239.9
H8B2 C8B C9B O3B 62.3 120.0
H8B2 C8B C9B O4B 250.4 300.1
C9B C8B H8B2 H8B1 118.6 119.9
C4A CHB HCB1 C1B 226.2 240.0
C4A CHB HCB1 HCB2 113.1 120.1
HCB1 CHB C1B NB 244.2 145.3
C1B CHB HCB1 HCB2 247.0 240.0
C4A CHB HCB2 C1B 133.8 120.0
C4A CHB HCB2 HCB1 246.9 240.0
HCB2 CHB C1B NB 128.4 25.3
C1B CHB HCB2 HCB1 113.1 120.0
C1B NB H22 C4B 180.0 180.6
H22 NB C4B H4B1 1.0 0.3