PDB Chemical Component DPC

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DPC

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 O1A 1.229 1.215
C1 O1B 1.226 1.348
C1 C2 1.467 1.473
O1B HO1 0.950 0.967
C2 C3 1.347 1.319
C2 O6 1.318 1.345
C3 C4 1.490 1.506
C3 H3 1.104 1.080
C4 C5 1.518 1.535
C4 NE 1.456 1.469
C4 H4 1.115 1.090
C5 N5 1.474 1.465
C5 C6 1.538 1.533
C5 H5 1.114 1.091
N5 C10 1.328 1.347
N5 HN5 1.021 0.970
C10 O10 1.226 1.213
C10 C11 1.512 1.506
C11 H111 1.114 1.089
C11 H112 1.116 1.090
C11 H113 1.115 1.089
C6 O6 1.399 1.422
C6 C7 1.545 1.506
C6 H6 1.115 1.091
C7 O7 1.225 1.213
C7 N8 1.334 1.348
N8 C81 1.481 1.465
N8 C9 1.480 1.465
C81 C82 1.538 1.529
C81 H811 1.115 1.090
C81 H812 1.115 1.090
C82 CG 1.507 1.507
C82 H821 1.115 1.089
C82 H822 1.116 1.090
CG CD1 1.406 1.381
CG CD2 1.412 1.383
CD1 CE1 1.400 1.383
CD1 HD1 1.103 1.080
CD2 CE2 1.397 1.382
CD2 HD2 1.103 1.080
CE1 CZ 1.413 1.382
CE1 HE1 1.103 1.080
CE2 CZ 1.398 1.382
CE2 HE2 1.103 1.080
CZ HZ 1.102 1.081
C9 C91 1.521 1.530
C9 H91 1.115 1.090
C9 H92 1.115 1.089
C91 C92 1.543 1.529
C91 H911 1.115 1.089
C91 H912 1.115 1.091
C92 H921 1.115 1.089
C92 H922 1.114 1.091
C92 H923 1.115 1.088
NE HNE1 1.021 1.008
NE HNE2 1.020 1.009

Bond Angles for DPC

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1A C1 O1B 120.0 120.0
O1A C1 C2 117.0 120.0
O1B C1 C2 122.8 120.0
C1 O1B HO1 120.0 120.0
C1 C2 C3 121.9 116.8
C1 C2 O6 116.1 116.8
C3 C2 O6 122.1 126.5
C2 C3 C4 121.8 122.3
C2 C3 H3 113.9 118.9
C2 O6 C6 119.6 110.2
C4 C3 H3 124.3 118.9
C3 C4 C5 112.4 108.2
C3 C4 NE 111.0 109.7
C3 C4 H4 106.6 109.7
C5 C4 NE 109.9 109.8
C5 C4 H4 107.7 109.6
C4 C5 N5 109.0 109.9
C4 C5 C6 109.1 107.4
C4 C5 H5 110.2 109.8
NE C4 H4 109.2 109.7
C4 NE HNE1 111.0 106.7
C4 NE HNE2 111.7 106.7
N5 C5 C6 110.0 110.1
N5 C5 H5 109.3 109.8
C5 N5 C10 124.9 120.1
C5 N5 HN5 123.3 120.0
C6 C5 H5 109.2 109.7
C5 C6 O6 110.4 109.3
C5 C6 C7 108.3 109.6
C5 C6 H6 108.1 109.5
C10 N5 HN5 111.9 120.0
N5 C10 O10 123.8 119.9
N5 C10 C11 112.8 120.1
O10 C10 C11 123.3 120.0
C10 C11 H111 112.9 109.5
C10 C11 H112 111.0 109.4
C10 C11 H113 111.0 109.5
H111 C11 H112 110.9 109.5
H111 C11 H113 111.0 109.5
H112 C11 H113 99.3 109.4
O6 C6 C7 104.7 109.5
O6 C6 H6 111.6 109.5
C7 C6 H6 113.6 109.4
C6 C7 O7 121.3 120.0
C6 C7 N8 117.8 120.0
O7 C7 N8 120.9 120.0
C7 N8 C81 115.3 120.0
C7 N8 C9 124.5 120.0
C81 N8 C9 120.2 120.0
N8 C81 C82 112.8 109.5
N8 C81 H811 111.0 109.4
N8 C81 H812 111.0 109.4
N8 C9 C91 110.6 109.5
N8 C9 H91 111.8 109.5
N8 C9 H92 111.8 109.4
C82 C81 H811 111.0 109.5
C82 C81 H812 111.0 109.5
C81 C82 CG 109.9 109.4
C81 C82 H821 112.0 109.4
C81 C82 H822 112.0 109.4
H811 C81 H812 99.4 109.4
CG C82 H821 112.1 109.5
CG C82 H822 112.1 109.5
C82 CG CD1 119.7 120.0
C82 CG CD2 120.2 120.0
H821 C82 H822 98.3 109.5
CD1 CG CD2 120.1 120.0
CG CD1 CE1 119.4 120.0
CG CD1 HD1 120.4 120.0
CG CD2 CE2 120.3 119.9
CG CD2 HD2 120.3 120.0
CE1 CD1 HD1 120.1 120.0
CD1 CE1 CZ 120.2 120.0
CD1 CE1 HE1 119.4 120.0
CE2 CD2 HD2 119.3 120.1
CD2 CE2 CZ 119.7 120.0
CD2 CE2 HE2 120.1 119.9
CZ CE1 HE1 120.4 120.0
CE1 CZ CE2 120.2 120.0
CE1 CZ HZ 120.4 120.0
CZ CE2 HE2 120.2 120.0
CE2 CZ HZ 119.3 120.0
C91 C9 H91 111.8 109.5
C91 C9 H92 111.8 109.5
C9 C91 C92 111.1 109.5
C9 C91 H911 111.6 109.5
C9 C91 H912 111.6 109.4
H91 C9 H92 98.6 109.5
C92 C91 H911 111.6 109.5
C92 C91 H912 111.6 109.4
C91 C92 H921 111.1 109.5
C91 C92 H922 111.5 109.4
C91 C92 H923 111.6 109.5
H911 C91 H912 98.8 109.4
H921 C92 H922 111.6 109.4
H921 C92 H923 111.6 109.5
H922 C92 H923 98.8 109.4
HNE1 NE HNE2 111.6 106.7

Torsion Angles for DPC

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O1B C1 O1A C2 183.9 179.9
O1A C1 O1B HO1 180.0 0.0
O1A C1 C2 C3 199.8 359.9
O1A C1 C2 O6 18.4 180.0
O1A C1 O1B C2 175.8 180.1
O1B C1 C2 C3 15.8 180.0
O1B C1 C2 O6 194.3 0.1
O1A C1 C2 O1B 184.1 179.9
C2 C1 O1B HO1 4.1 180.0
C3 C2 C1 O6 181.5 179.9
C1 C2 C3 C4 180.4 179.3
C1 C2 C3 H3 0.4 359.1
C1 C2 O6 C6 199.1 203.8
HO1 O1B C1 C2 4.1 180.0
C1 C2 C3 O6 178.5 180.1
C3 C2 O6 C6 17.7 23.9
C4 C3 C2 H3 180.0 180.1
C2 C3 C4 C5 10.8 11.9
C2 C3 C4 NE 134.3 131.7
C2 C3 C4 H4 253.1 252.3
C1 C2 O6 C3 181.5 179.9
O6 C2 C3 C4 1.9 359.2
O6 C2 C3 H3 182.0 179.1
C5 C6 O6 C2 312.9 303.1
C2 O6 C6 C7 196.5 183.0
C2 O6 C6 H6 73.2 63.0
C4 C3 C2 O6 1.9 359.2
C2 C3 C4 H3 180.0 179.9
C5 C4 C3 NE 236.6 240.2
C5 C4 C3 H4 117.8 119.6
C3 C4 C5 N5 201.6 197.7
C3 C4 C5 C6 321.9 317.5
C3 C4 C5 H5 81.7 76.8
NE C4 C3 H4 241.2 239.4
C3 C4 NE HNE1 180.0 60.0
C3 C4 NE HNE2 54.8 173.8
H3 C3 C2 O6 182.0 179.1
C2 C3 H3 C4 180.0 180.1
H3 C3 C4 C5 190.8 192.0
H3 C3 C4 NE 314.2 311.8
H3 C3 C4 H4 73.0 72.4
C5 C4 C3 H3 190.8 192.0
C3 C4 C5 NE 124.0 119.8
C3 C4 C5 H4 242.9 240.4
NE C4 C5 H4 118.9 120.6
C5 C4 NE HNE1 304.8 178.8
C5 C4 NE HNE2 179.7 292.6
N5 C5 C4 C6 239.8 240.2
N5 C5 C4 H5 119.9 120.9
C4 C5 N5 C10 234.2 272.7
C4 C5 N5 HN5 54.1 92.7
C6 C5 C4 H5 240.1 240.7
C4 C5 C6 O6 56.0 68.5
C4 C5 C6 C7 170.2 188.6
C4 C5 C6 H6 293.7 308.6
NE C4 C3 H3 314.2 311.8
C3 C4 NE C5 235.1 241.2
C3 C4 NE H4 117.2 120.6
C5 C4 NE H4 242.0 239.4
NE C4 C5 N5 77.6 77.9
NE C4 C5 C6 197.8 197.7
NE C4 C5 H5 317.7 317.0
HNE1 NE C4 HNE2 125.2 246.2
H4 C4 C3 H3 73.0 72.4
C3 C4 H4 C5 120.8 118.7
C3 C4 H4 NE 240.1 239.4
C5 C4 H4 NE 119.3 120.7
H4 C4 C5 N5 318.7 317.3
H4 C4 C5 C6 78.9 77.1
H4 C4 C5 H5 198.8 196.4
H4 C4 NE HNE1 62.8 299.4
H4 C4 NE HNE2 297.6 53.2
N5 C5 C4 NE 77.6 77.9
N5 C5 C4 H4 318.7 317.3
C4 C5 N5 C6 119.7 118.1
C4 C5 N5 H5 239.5 239.1
C6 C5 N5 H5 119.9 120.9
N5 C5 C6 O6 175.6 188.2
N5 C5 C6 C7 289.8 308.2
N5 C5 C6 H6 53.3 68.2
C10 N5 C5 HN5 180.1 180.0
C5 N5 C10 O10 358.6 3.6
C5 N5 C10 C11 179.2 183.6
C2 O6 C6 C5 312.9 303.1
C6 C5 C4 NE 197.8 197.7
C6 C5 C4 H4 78.9 77.1
C4 C5 C6 N5 240.4 240.3
C4 C5 C6 H5 120.5 119.4
N5 C5 C6 H5 240.1 239.0
C6 C5 N5 C10 114.5 154.5
C6 C5 N5 HN5 294.4 334.5
O6 C6 C5 C7 245.8 240.0
O6 C6 C5 H6 122.3 120.0
C7 C6 C5 H6 236.5 240.0
C5 C6 C7 O7 292.7 306.5
C5 C6 C7 N8 110.9 126.5
H5 C5 C4 NE 317.7 317.0
H5 C5 C4 H4 198.8 196.4
C4 C5 H5 N5 119.8 121.0
C4 C5 H5 C6 240.2 242.1
N5 C5 H5 C6 120.4 121.1
H5 C5 N5 C10 354.6 33.6
H5 C5 N5 HN5 174.6 213.6
H5 C5 C6 O6 295.6 309.2
H5 C5 C6 C7 49.7 69.2
H5 C5 C6 H6 173.2 189.2
C10 N5 C5 C6 114.5 154.5
C10 N5 C5 H5 354.6 33.6
C5 N5 C10 HN5 180.0 180.0
O10 C10 N5 C11 179.4 179.9
N5 C10 C11 H111 180.0 185.0
N5 C10 C11 H112 305.2 305.0
N5 C10 C11 H113 54.7 64.9
HN5 N5 C5 C6 294.4 334.5
HN5 N5 C5 H5 174.6 213.6
C5 N5 HN5 C10 180.0 180.0
HN5 N5 C10 O10 178.7 183.6
HN5 N5 C10 C11 359.2 3.7
O10 C10 N5 HN5 178.7 183.6
N5 C10 O10 C11 180.6 180.1
O10 C10 C11 H111 0.6 5.1
O10 C10 C11 H112 125.8 125.1
O10 C10 C11 H113 235.3 245.0
C11 C10 N5 HN5 359.2 3.7
N5 C10 C11 O10 179.4 179.9
H111 C11 C10 H112 234.8 240.0
H111 C11 C10 H113 125.3 120.1
H112 C11 C10 H113 250.5 240.1
C10 C11 H111 H112 125.2 120.0
C10 C11 H111 H113 234.6 239.9
H112 C11 H111 H113 109.4 119.9
C10 C11 H112 H111 233.7 239.9
C10 C11 H112 H113 116.9 120.0
H111 C11 H112 H113 243.2 240.0
C10 C11 H113 H111 126.4 120.1
C10 C11 H113 H112 243.2 240.1
H111 C11 H113 H112 116.8 120.0
O6 C6 C5 H5 295.6 309.2
C5 C6 O6 C7 116.4 120.0
C5 C6 O6 H6 239.7 240.1
C7 C6 O6 H6 123.3 120.0
O6 C6 C7 O7 50.6 66.4
O6 C6 C7 N8 228.7 246.4
C7 C6 C5 H5 49.7 69.2
C5 C6 C7 O6 242.1 240.1
C5 C6 C7 H6 120.2 120.0
O6 C6 C7 H6 238.0 239.9
O7 C7 C6 N8 181.9 180.0
C6 C7 N8 C81 183.6 188.8
C6 C7 N8 C9 5.4 8.8
H6 C6 C5 H5 173.2 189.2
C5 C6 H6 O6 121.6 119.8
C5 C6 H6 C7 239.7 239.9
O6 C6 H6 C7 118.1 120.1
H6 C6 C7 O7 172.5 186.5
H6 C6 C7 N8 350.7 6.5
O7 C7 C6 H6 172.5 186.5
C6 C7 O7 N8 178.1 180.0
O7 C7 N8 C81 1.7 8.8
O7 C7 N8 C9 183.5 188.9
N8 C7 C6 H6 350.7 6.5
C6 C7 N8 O7 181.8 180.0
C81 N8 C7 C9 178.2 180.0
C7 N8 C81 C82 76.3 270.0
C7 N8 C81 H811 201.6 30.1
C7 N8 C81 H812 311.1 150.0
C7 N8 C9 C91 78.5 277.5
C7 N8 C9 H91 203.8 157.5
C7 N8 C9 H92 313.2 37.5
C7 N8 C81 C9 181.7 180.0
C81 N8 C9 C91 260.4 97.5
C81 N8 C9 H91 25.6 337.5
C81 N8 C9 H92 135.1 217.5
C82 C81 N8 H811 234.8 239.9
C82 C81 N8 H812 125.2 120.0
N8 C81 C82 CG 184.9 180.0
N8 C81 C82 H821 310.2 300.0
N8 C81 C82 H822 59.6 60.0
H811 C81 N8 H812 250.5 240.1
C7 N8 C9 C81 178.1 180.0
C9 N8 C81 C82 254.6 90.0
C9 N8 C81 H811 19.8 210.0
C9 N8 C81 H812 129.4 329.9
C91 C9 N8 H91 234.7 120.0
C91 C9 N8 H92 125.2 240.0
N8 C9 C91 C92 53.3 186.9
N8 C9 C91 H911 178.5 66.7
N8 C9 C91 H912 288.0 306.8
H91 C9 N8 H92 250.5 120.0
C82 C81 N8 C9 254.6 90.0
N8 C81 C82 H811 125.2 120.0
N8 C81 C82 H812 234.8 240.0
H811 C81 C82 H812 109.5 120.0
CG C82 C81 H821 234.7 240.0
CG C82 C81 H822 125.3 120.0
C81 C82 CG CD1 83.0 90.0
C81 C82 CG CD2 264.6 269.7
H821 C82 C81 H822 250.6 240.0
H811 C81 N8 C9 19.8 210.0
N8 C81 H811 C82 233.8 240.0
N8 C81 H811 H812 116.9 119.9
C82 C81 H811 H812 243.1 239.9
H811 C81 C82 CG 59.6 60.0
H811 C81 C82 H821 184.9 180.0
H811 C81 C82 H822 294.4 300.0
H812 C81 N8 C9 129.4 329.9
N8 C81 H812 C82 126.3 120.0
N8 C81 H812 H811 243.1 240.1
C82 C81 H812 H811 116.9 120.1
H812 C81 C82 CG 310.1 300.0
H812 C81 C82 H821 75.4 60.0
H812 C81 C82 H822 184.8 180.0
CG C82 C81 H811 59.6 60.0
CG C82 C81 H812 310.1 300.0
C81 C82 CG H821 125.3 120.0
C81 C82 CG H822 234.7 240.0
H821 C82 CG H822 109.4 120.1
CD1 CG C82 CD2 178.4 180.4
C82 CG CD1 CE1 182.7 180.0
C82 CG CD1 HD1 2.7 359.9
C82 CG CD2 CE2 177.0 179.9
C82 CG CD2 HD2 357.0 0.2
H821 C82 C81 H811 184.9 180.0
H821 C82 C81 H812 75.4 60.0
C81 C82 H821 CG 235.9 240.0
C81 C82 H821 H822 117.9 120.0
CG C82 H821 H822 242.0 239.9
H821 C82 CG CD1 317.7 330.1
H821 C82 CG CD2 139.3 149.7
H822 C82 C81 H811 294.4 300.0
H822 C82 C81 H812 184.8 180.0
C81 C82 H822 CG 124.1 120.0
C81 C82 H822 H821 242.1 240.0
CG C82 H822 H821 118.0 120.1
H822 C82 CG CD1 208.3 210.0
H822 C82 CG CD2 29.9 29.6
CD1 CG C82 H821 317.7 330.1
CD1 CG C82 H822 208.3 210.0
C82 CG CD1 CD2 181.6 179.6
CD1 CG CD2 CE2 358.6 359.5
CD1 CG CD2 HD2 178.6 179.9
CE1 CD1 CG HD1 180.0 180.1
CG CD1 CE1 CZ 359.9 359.9
CG CD1 CE1 HE1 179.9 179.9
CD2 CG C82 H821 139.3 149.7
CD2 CG C82 H822 29.9 29.6
C82 CG CD2 CD1 178.4 180.4
CD2 CG CD1 CE1 1.1 0.3
CD2 CG CD1 HD1 181.1 180.3
CE2 CD2 CG HD2 180.0 179.6
CG CD2 CE2 CZ 0.7 0.4
CG CD2 CE2 HE2 180.6 180.3
CE1 CD1 CG CD2 1.1 0.3
CG CD1 CE1 HD1 180.0 179.9
CZ CE1 CD1 HE1 180.0 180.0
CD1 CE1 CZ CE2 359.4 0.0
CD1 CE1 CZ HZ 179.5 180.0
HD1 CD1 CG CD2 181.1 180.3
CG CD1 HD1 CE1 180.0 180.1
HD1 CD1 CE1 CZ 179.9 180.0
HD1 CD1 CE1 HE1 359.9 360.0
CG CD2 CE2 HD2 180.0 180.4
CE1 CZ CE2 CD2 0.3 359.8
CZ CE2 CD2 HE2 180.0 180.2
CD2 CE2 CZ HZ 180.2 179.9
CG CD2 HD2 CE2 180.0 179.6
HD2 CD2 CE2 CZ 180.7 180.0
HD2 CD2 CE2 HE2 0.7 359.9
CZ CE1 CD1 HD1 179.9 180.0
CD1 CE1 CZ HE1 180.0 180.0
CD2 CE2 CZ CE1 0.3 359.8
CE1 CZ CE2 HE2 180.3 180.0
CE2 CZ CE1 HZ 180.0 180.1
HE1 CE1 CD1 HD1 359.9 360.0
CD1 CE1 HE1 CZ 180.0 180.0
HE1 CE1 CZ CE2 179.4 180.0
HE1 CE1 CZ HZ 359.5 360.0
CZ CE2 CD2 HD2 180.7 180.0
CD2 CE2 CZ HE2 180.0 179.8
CE2 CZ CE1 HE1 179.4 180.0
CE1 CZ CE2 HZ 180.0 179.9
HE2 CE2 CD2 HD2 0.7 359.9
CD2 CE2 HE2 CZ 180.0 180.2
HE2 CE2 CZ HZ 0.3 0.0
HZ CZ CE1 HE1 359.5 360.0
CE1 CZ HZ CE2 180.0 180.1
HZ CZ CE2 HE2 0.3 0.0
N8 C9 C91 H91 125.3 240.0
N8 C9 C91 H92 234.7 120.0
H91 C9 C91 H92 109.4 240.0
C92 C91 C9 H911 234.7 120.1
C92 C91 C9 H912 125.3 240.1
C9 C91 C92 H921 180.0 175.1
C9 C91 C92 H922 305.3 295.0
C9 C91 C92 H923 54.7 54.9
H911 C91 C9 H912 250.6 120.0
N8 C9 H91 C91 235.4 120.0
N8 C9 H91 H92 117.7 240.0
C91 C9 H91 H92 242.3 120.0
H91 C9 C91 C92 288.0 306.9
H91 C9 C91 H911 53.2 186.7
H91 C9 C91 H912 162.7 66.8
N8 C9 H92 C91 124.6 240.0
N8 C9 H92 H91 242.3 120.0
C91 C9 H92 H91 117.7 240.0
H92 C9 C91 C92 178.5 66.9
H92 C9 C91 H911 303.8 306.8
H92 C9 C91 H912 53.2 186.8
C92 C91 C9 H91 288.0 306.9
C92 C91 C9 H92 178.5 66.9
C9 C91 C92 H911 125.3 239.9
C9 C91 C92 H912 234.7 119.9
H911 C91 C92 H912 109.4 240.0
H921 C92 C91 H922 234.7 240.1
H921 C92 C91 H923 125.2 120.2
H922 C92 C91 H923 250.5 240.1
H911 C91 C9 H91 53.2 186.7
H911 C91 C9 H92 303.8 306.8
C9 C91 H911 C92 235.0 120.1
C9 C91 H911 H912 117.5 240.1
C92 C91 H911 H912 242.5 119.9
H911 C91 C92 H921 54.7 295.2
H911 C91 C92 H922 180.0 55.1
H911 C91 C92 H923 289.5 175.0
H912 C91 C9 H91 162.7 66.8
H912 C91 C9 H92 53.2 186.8
C9 C91 H912 C92 125.0 240.0
C9 C91 H912 H911 242.5 120.0
C92 C91 H912 H911 117.5 240.0
H912 C91 C92 H921 305.3 55.1
H912 C91 C92 H922 70.6 175.0
H912 C91 C92 H923 180.0 295.0
H921 C92 C91 H911 54.7 295.2
H921 C92 C91 H912 305.3 55.1
C91 C92 H921 H922 125.2 119.9
C91 C92 H921 H923 234.8 239.9
H922 C92 H921 H923 109.5 120.0
H922 C92 C91 H911 180.0 55.1
H922 C92 C91 H912 70.6 175.0
C91 C92 H922 H921 235.0 240.0
C91 C92 H922 H923 117.5 120.0
H921 C92 H922 H923 242.5 240.0
H923 C92 C91 H911 289.5 175.0
H923 C92 C91 H912 180.0 295.0
C91 C92 H923 H921 125.0 120.1
C91 C92 H923 H922 242.5 240.1
H921 C92 H923 H922 117.6 120.0
HNE1 NE C4 H4 62.8 299.4
C4 NE HNE1 HNE2 234.8 113.8
HNE2 NE C4 H4 297.6 53.2
C4 NE HNE2 HNE1 124.8 246.2