PDB Chemical Component DP9

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DP9

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
NH2 CZ 1.333 1.304
NH2 HH2 1.020 0.970
CZ NH1 1.338 1.374
CZ NE 1.331 1.375
NH1 NO 1.353 1.401
NH1 HH1 1.020 0.971
NO O2 1.285 1.218
NO O3 1.209 1.218
NE CD 1.477 1.465
NE HNE 1.019 0.971
CD CG 1.543 1.530
CD HD1 1.115 1.090
CD HD2 1.115 1.089
CG CB 1.551 1.530
CG HG1 1.115 1.090
CG HG2 1.115 1.090
CB CA 1.550 1.530
CB HB1 1.115 1.090
CB HB2 1.115 1.089
CA N 1.471 1.469
CA C 1.551 1.508
CA HA 1.115 1.090
N HN1 1.020 1.009
N HN2 1.020 1.010
C O 1.239 1.213
C N2' 1.343 1.347
N2' CG' 1.519 1.465
N2' H2' 1.019 0.970
CG' CD' 1.563 1.544
CG' CB' 1.533 1.542
CG' HG' 1.116 1.090
CD' N' 1.483 1.486
CD' HD'1 1.115 1.090
CD' HD'2 1.114 1.090
N' CA' 1.469 1.485
N' HN' 1.020 1.009
CA' C' 1.537 1.507
CA' CB' 1.534 1.546
CA' HA' 1.114 1.090
C' O' 1.231 1.214
C' N1' 1.321 1.348
N1' H1'1 1.020 0.970
N1' H1'2 1.020 0.970
CB' HB'1 1.114 1.090
CB' HB'2 1.115 1.090

Bond Angles for DP9

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CZ NH2 HH2 108.5 120.0
NH2 CZ NH1 122.3 120.0
NH2 CZ NE 116.1 120.0
NH1 CZ NE 121.5 120.0
CZ NH1 NO 131.5 120.0
CZ NH1 HH1 104.6 120.0
CZ NE CD 131.3 120.0
CZ NE HNE 104.6 120.0
NO NH1 HH1 104.6 120.0
NH1 NO O2 117.5 120.0
NH1 NO O3 123.6 120.0
O2 NO O3 118.9 120.0
CD NE HNE 104.7 120.0
NE CD CG 110.3 109.5
NE CD HD1 111.9 109.4
NE CD HD2 111.9 109.5
CG CD HD1 111.9 109.5
CG CD HD2 111.9 109.5
CD CG CB 113.4 109.5
CD CG HG1 110.8 109.4
CD CG HG2 110.8 109.5
HD1 CD HD2 98.5 109.5
CB CG HG1 110.8 109.5
CB CG HG2 110.7 109.5
CG CB CA 114.5 109.5
CG CB HB1 110.3 109.4
CG CB HB2 110.3 109.5
HG1 CG HG2 99.5 109.4
CA CB HB1 110.4 109.5
CA CB HB2 110.4 109.5
CB CA N 106.3 109.5
CB CA C 113.3 109.4
CB CA HA 109.8 109.5
HB1 CB HB2 99.9 109.5
N CA C 111.3 109.5
N CA HA 111.8 109.5
CA N HN1 106.2 106.7
CA N HN2 113.4 106.7
C CA HA 104.5 109.5
CA C O 120.5 120.0
CA C N2' 116.3 120.0
HN1 N HN2 113.5 106.7
O C N2' 123.2 120.0
C N2' CG' 125.9 120.0
C N2' H2' 110.2 120.0
CG' N2' H2' 123.9 120.0
N2' CG' CD' 114.5 110.3
N2' CG' CB' 113.4 110.3
N2' CG' HG' 101.4 110.3
CD' CG' CB' 103.3 105.2
CD' CG' HG' 111.7 110.3
CG' CD' N' 103.0 104.6
CG' CD' HD'1 114.6 110.4
CG' CD' HD'2 114.7 110.4
CB' CG' HG' 113.0 110.4
CG' CB' CA' 105.4 105.0
CG' CB' HB'1 113.7 110.3
CG' CB' HB'2 113.7 110.4
N' CD' HD'1 114.7 110.4
N' CD' HD'2 114.7 110.4
CD' N' CA' 112.1 104.3
CD' N' HN' 111.2 106.8
HD'1 CD' HD'2 95.8 110.5
CA' N' HN' 111.3 106.7
N' CA' C' 113.1 110.4
N' CA' CB' 105.1 104.6
N' CA' HA' 111.5 110.4
C' CA' CB' 113.4 110.5
C' CA' HA' 102.8 110.4
CA' C' O' 122.1 120.0
CA' C' N1' 121.2 120.0
CB' CA' HA' 111.1 110.4
CA' CB' HB'1 113.8 110.3
CA' CB' HB'2 113.7 110.3
O' C' N1' 116.7 120.0
C' N1' H1'1 116.7 119.9
C' N1' H1'2 121.2 120.1
H1'1 N1' H1'2 122.1 120.0
HB'1 CB' HB'2 96.8 110.4

Torsion Angles for DP9

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
NH1 CZ NH2 NE 180.1 180.0
NH2 CZ NH1 NO 2.4 6.1
NH2 CZ NH1 HH1 237.1 186.1
NH2 CZ NE CD 180.1 360.0
NH2 CZ NE HNE 54.8 180.0
HH2 NH2 CZ NH1 266.7 6.6
HH2 NH2 CZ NE 86.6 186.6
NH1 CZ NH2 HH2 266.7 6.6
NH2 CZ NH1 NE 179.9 180.0
NH1 CZ NE CD 360.0 179.9
NH1 CZ NE HNE 234.7 360.0
NO NH1 CZ HH1 125.3 180.0
CZ NH1 NO O2 178.4 32.5
CZ NH1 NO O3 358.7 212.6
NE CZ NH2 HH2 86.6 186.6
NH2 CZ NE NH1 180.1 180.0
NE CZ NH1 NO 182.5 186.1
NE CZ NH1 HH1 57.2 6.1
CD NE CZ HNE 125.3 180.0
CZ NE CD CG 95.7 180.0
CZ NE CD HD1 220.9 60.0
CZ NE CD HD2 330.4 300.0
NO NH1 CZ NE 182.5 186.1
CZ NH1 NO HH1 234.7 180.0
O2 NO NH1 O3 179.7 179.9
HH1 NH1 CZ NE 57.2 6.1
CZ NH1 HH1 NO 140.8 180.0
HH1 NH1 NO O2 303.7 212.5
HH1 NH1 NO O3 124.0 32.6
O2 NO NH1 HH1 303.7 212.5
NH1 NO O2 O3 180.3 180.1
O3 NO NH1 HH1 124.0 32.6
NH1 NO O3 O2 179.7 179.9
CZ NE CD HNE 234.7 180.0
CG CD NE HD1 234.8 120.0
CG CD NE HD2 125.2 239.9
NE CD CG CB 48.0 180.0
NE CD CG HG1 173.3 60.0
NE CD CG HG2 282.8 300.1
HD1 CD NE HD2 250.4 120.0
CZ NE HNE CD 140.7 180.0
HNE NE CD CG 221.0 360.0
HNE NE CD HD1 346.2 240.0
HNE NE CD HD2 95.7 120.0
CG CD NE HNE 221.0 360.0
NE CD CG HD1 125.3 240.1
NE CD CG HD2 234.7 120.1
HD1 CD CG HD2 109.5 240.0
CB CG CD HG1 234.7 120.0
CB CG CD HG2 125.3 240.0
CD CG CB CA 71.3 180.0
CD CG CB HB1 196.6 60.0
CD CG CB HB2 306.0 300.0
HG1 CG CD HG2 250.5 120.0
HD1 CD NE HNE 346.2 240.0
NE CD HD1 CG 235.7 120.0
NE CD HD1 HD2 117.9 240.0
CG CD HD1 HD2 242.2 120.0
HD1 CD CG CB 282.8 300.0
HD1 CD CG HG1 48.0 180.0
HD1 CD CG HG2 157.5 60.0
HD2 CD NE HNE 95.7 120.0
NE CD HD2 CG 124.3 239.9
NE CD HD2 HD1 242.1 119.9
CG CD HD2 HD1 117.8 240.0
HD2 CD CG CB 173.3 60.0
HD2 CD CG HG1 298.6 300.0
HD2 CD CG HG2 48.0 180.0
CB CG CD HD1 282.8 300.0
CB CG CD HD2 173.3 60.0
CD CG CB HG1 125.3 240.0
CD CG CB HG2 234.7 120.1
HG1 CG CB HG2 109.4 240.0
CA CB CG HB1 234.8 120.0
CA CB CG HB2 125.3 240.0
CG CB CA N 201.1 295.0
CG CB CA C 78.6 175.0
CG CB CA HA 322.2 55.0
HB1 CB CG HB2 250.5 120.0
HG1 CG CD HD1 48.0 180.0
HG1 CG CD HD2 298.6 300.0
CD CG HG1 CB 233.3 120.0
CD CG HG1 HG2 116.7 240.0
CB CG HG1 HG2 243.4 120.0
HG1 CG CB CA 306.0 300.0
HG1 CG CB HB1 71.3 180.0
HG1 CG CB HB2 180.8 60.0
HG2 CG CD HD1 157.5 60.0
HG2 CG CD HD2 48.0 180.0
CD CG HG2 CB 126.7 240.0
CD CG HG2 HG1 243.3 120.0
CB CG HG2 HG1 116.6 240.0
HG2 CG CB CA 196.6 60.0
HG2 CG CB HB1 321.9 300.0
HG2 CG CB HB2 71.4 180.0
CA CB CG HG1 306.0 300.0
CA CB CG HG2 196.6 60.0
CG CB CA HB1 125.2 240.0
CG CB CA HB2 234.8 120.0
HB1 CB CA HB2 109.5 240.0
N CA CB C 122.6 120.0
N CA CB HA 238.9 240.0
CB CA N HN1 180.0 186.2
CB CA N HN2 54.7 300.0
C CA CB HA 116.4 120.0
CB CA C O 82.5 100.0
CB CA C N2' 263.1 280.0
HB1 CB CG HG1 71.3 180.0
HB1 CB CG HG2 321.9 300.0
CG CB HB1 CA 232.4 120.0
CG CB HB1 HB2 116.2 240.0
CA CB HB1 HB2 243.7 120.0
HB1 CB CA N 75.9 55.0
HB1 CB CA C 313.3 295.0
HB1 CB CA HA 197.0 175.0
HB2 CB CG HG1 180.8 60.0
HB2 CB CG HG2 71.4 180.0
CG CB HB2 CA 127.6 240.0
CG CB HB2 HB1 243.8 120.0
CA CB HB2 HB1 116.2 240.0
HB2 CB CA N 326.3 175.0
HB2 CB CA C 203.8 55.0
HB2 CB CA HA 87.4 295.0
N CA CB HB1 75.9 55.0
N CA CB HB2 326.3 175.0
CB CA N C 236.2 240.0
CB CA N HA 119.7 120.0
C CA N HA 243.6 240.0
N CA C O 322.8 340.0
N CA C N2' 143.4 160.0
HN1 N CA HN2 125.3 246.3
C CA CB HB1 313.3 295.0
C CA CB HB2 203.8 55.0
CB CA C N 119.7 120.0
CB CA C HA 240.6 240.0
N CA C HA 120.9 120.0
C CA N HN1 303.8 306.2
C CA N HN2 178.5 60.0
O C CA N2' 179.4 180.0
CA C N2' CG' 182.7 180.0
CA C N2' H2' 2.7 0.0
HA CA CB HB1 197.0 175.0
HA CA CB HB2 87.4 295.0
CB CA HA N 242.3 240.0
CB CA HA C 121.8 120.0
N CA HA C 239.5 240.0
HA CA N HN1 60.3 66.3
HA CA N HN2 294.9 180.0
HA CA C O 201.9 220.0
HA CA C N2' 22.6 39.9
HN1 N CA C 303.8 306.2
HN1 N CA HA 60.3 66.3
CA N HN1 HN2 234.7 113.8
HN2 N CA C 178.5 60.0
HN2 N CA HA 294.9 180.0
CA N HN2 HN1 121.4 246.2
O C CA HA 201.9 220.0
CA C O N2' 180.7 180.0
O C N2' CG' 3.4 360.0
O C N2' H2' 183.4 180.0
N2' C CA HA 22.6 39.9
CA C N2' O 179.3 180.0
CG' N2' C H2' 180.0 180.0
C N2' CG' CD' 62.5 87.8
C N2' CG' CB' 180.7 203.6
C N2' CG' HG' 302.1 325.8
C N2' CG' H2' 180.0 180.0
CD' CG' N2' CB' 241.8 244.2
CD' CG' N2' HG' 120.4 122.0
N2' CG' CD' N' 92.5 142.7
N2' CG' CD' HD'1 217.8 261.5
N2' CG' CD' HD'2 327.3 24.0
CB' CG' N2' HG' 238.6 237.8
N2' CG' CB' CA' 267.9 241.1
N2' CG' CB' HB'1 33.1 360.0
N2' CG' CB' HB'2 142.6 122.3
C N2' H2' CG' 180.0 180.0
H2' N2' CG' CD' 242.5 267.8
H2' N2' CG' CB' 0.7 23.6
H2' N2' CG' HG' 122.0 145.8
CD' CG' N2' H2' 242.5 267.8
N2' CG' CD' CB' 123.8 118.9
N2' CG' CD' HG' 245.5 238.0
CB' CG' CD' HG' 121.7 119.0
CD' CG' CB' CA' 32.4 0.1
CD' CG' CB' HB'1 157.6 118.9
CD' CG' CB' HB'2 267.1 241.2
N' CD' CG' HD'1 234.7 241.2
N' CD' CG' HD'2 125.3 118.7
CG' CD' N' CA' 19.3 320.5
CG' CD' N' HN' 254.0 207.8
HD'1 CD' CG' HD'2 250.5 237.5
CB' CG' N2' H2' 0.7 23.6
N2' CG' CB' CD' 235.5 241.1
N2' CG' CB' HG' 114.6 122.1
CD' CG' CB' HG' 239.1 241.1
CB' CG' CD' N' 328.8 23.8
CB' CG' CD' HD'1 94.1 142.6
CB' CG' CD' HD'2 203.5 265.1
N' CA' CB' CG' 339.0 336.1
C' CA' CB' CG' 215.0 217.3
CG' CB' CA' HA' 99.8 94.9
CA' CB' CG' HB'1 234.7 241.2
CA' CB' CG' HB'2 125.2 118.9
HB'1 CB' CG' HB'2 250.5 237.7
HG' CG' N2' H2' 122.0 145.8
N2' CG' HG' CD' 122.4 122.1
N2' CG' HG' CB' 238.4 237.8
CD' CG' HG' CB' 116.0 115.8
HG' CG' CD' N' 207.0 264.8
HG' CG' CD' HD'1 332.3 23.6
HG' CG' CD' HD'2 81.8 146.1
HG' CG' CB' CA' 153.3 119.0
HG' CG' CB' HB'1 278.5 237.8
HG' CG' CB' HB'2 28.0 0.1
N' CD' CG' CB' 328.8 23.8
N' CD' CG' HG' 207.0 264.8
CG' CD' N' HD'1 125.2 118.8
CG' CD' N' HD'2 234.7 241.3
HD'1 CD' N' HD'2 109.5 122.5
CA' N' CD' HN' 125.3 112.8
CD' N' CA' C' 124.8 158.3
CD' N' CA' CB' 0.6 39.5
CD' N' CA' HA' 240.1 280.7
HD'1 CD' CG' CB' 94.1 142.6
HD'1 CD' CG' HG' 332.3 23.6
CG' CD' HD'1 N' 241.1 244.8
CG' CD' HD'1 HD'2 120.5 122.5
N' CD' HD'1 HD'2 239.4 237.6
HD'1 CD' N' CA' 254.1 201.8
HD'1 CD' N' HN' 128.8 89.0
HD'2 CD' CG' CB' 203.5 265.1
HD'2 CD' CG' HG' 81.8 146.1
CG' CD' HD'2 N' 118.9 115.1
CG' CD' HD'2 HD'1 239.5 237.5
N' CD' HD'2 HD'1 120.6 122.5
HD'2 CD' N' CA' 144.6 79.3
HD'2 CD' N' HN' 19.3 326.5
CG' CB' CA' N' 339.0 336.1
CA' N' CD' HD'1 254.1 201.8
CA' N' CD' HD'2 144.6 79.3
CD' N' CA' HN' 234.7 247.2
C' CA' N' CB' 124.2 118.8
C' CA' N' HA' 244.7 237.6
N' CA' C' O' 343.2 341.5
N' CA' C' N1' 163.3 161.4
CB' CA' N' HA' 120.5 118.8
N' CA' CB' HB'1 213.8 217.3
N' CA' CB' HB'2 104.2 95.0
HN' N' CD' HD'1 128.8 89.0
HN' N' CD' HD'2 19.3 326.5
CD' N' HN' CA' 125.7 111.1
HN' N' CA' C' 250.1 271.1
HN' N' CA' CB' 125.9 152.3
HN' N' CA' HA' 5.4 33.5
CG' CB' CA' C' 215.0 217.3
C' CA' N' HN' 250.1 271.1
N' CA' C' CB' 240.5 244.8
N' CA' C' HA' 120.4 122.3
CB' CA' C' HA' 239.9 237.5
C' CA' CB' HB'1 89.8 98.5
C' CA' CB' HB'2 340.2 336.2
O' C' CA' N1' 179.9 180.0
CA' C' N1' H1'1 359.9 0.0
CA' C' N1' H1'2 179.9 180.0
CA' CB' CG' HG' 153.3 119.0
CG' CB' CA' HB'1 125.2 118.8
CG' CB' CA' HB'2 234.8 241.1
CB' CA' N' HN' 125.9 152.3
N' CA' CB' C' 124.0 118.8
N' CA' CB' HA' 239.3 241.3
C' CA' CB' HA' 115.3 122.4
CB' CA' C' O' 102.7 96.7
CB' CA' C' N1' 282.8 276.6
HB'1 CB' CA' HB'2 109.5 122.2
HA' CA' N' HN' 5.4 33.5
N' CA' HA' C' 238.5 237.6
N' CA' HA' CB' 116.9 115.2
C' CA' HA' CB' 238.4 237.5
HA' CA' C' O' 222.8 219.1
HA' CA' C' N1' 42.9 39.1
HA' CA' CB' HB'1 334.5 336.0
HA' CA' CB' HB'2 225.0 213.8
O' C' CA' CB' 102.7 96.7
O' C' CA' HA' 222.8 219.1
CA' C' O' N1' 180.1 180.0
O' C' N1' H1'1 180.0 180.0
O' C' N1' H1'2 0.1 359.9
N1' C' CA' CB' 282.8 276.6
N1' C' CA' HA' 42.9 39.1
CA' C' N1' O' 179.9 180.0
H1'1 N1' C' H1'2 180.0 180.1
C' N1' H1'1 H1'2 180.0 179.9
C' N1' H1'2 H1'1 180.0 180.1
HB'1 CB' CG' HG' 278.5 237.8
CG' CB' HB'1 CA' 239.3 244.5
CG' CB' HB'1 HB'2 119.6 122.3
HB'1 CB' CA' HA' 334.5 336.0
CA' CB' HB'1 HB'2 240.3 237.8
HB'2 CB' CG' HG' 28.0 0.1
CG' CB' HB'2 CA' 120.7 115.6
CG' CB' HB'2 HB'1 240.4 237.7
HB'2 CB' CA' HA' 225.0 213.8
CA' CB' HB'2 HB'1 119.7 122.2