PDB Chemical Component DP6

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DP6

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C3A	C3	1.530	1.535
C3A	H3A1	1.100	1.096
C3A	H3A2	1.100	1.095
C3A	H3A3	1.100	1.096
O1A	PA	1.479	1.502
O2A	PA	1.486	1.618
O2A	HO2A	0.950	0.981
O3A	C3	1.429	1.434
O3A	HO3A	0.950	0.967
O1B	PB	1.478	1.500
O2B	PB	1.604	1.616
O2B	HO2B	0.950	0.981
O3B	PB	1.607	1.616
O3B	HO3B	0.950	0.980
PB	O6	1.610	1.616
O6	PA	1.608	1.617
PA	O5	1.606	1.616
O5	C5	1.431	1.422
C5	C4	1.531	1.524
C5	H51	1.100	1.094
C5	H52	1.100	1.094
C4	C3	1.530	1.542
C4	H41	1.100	1.100
C4	H42	1.100	1.099
C3	C2	1.535	1.538
C2	C1	1.535	1.513
C2	H21	1.100	1.097
C2	H22	1.101	1.099
C1	O1	1.229	1.223
C1	O2	1.225	1.356
O2	HO2	0.950	0.981

Bond Angles for DP6

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C3	C3A	H3A1	109.5	110.7
C3	C3A	H3A2	109.5	112.1
C3	C3A	H3A3	109.5	110.9
C3A	C3	O3A	109.1	106.7
C3A	C3	C4	108.6	111.4
C3A	C3	C2	110.2	109.2
H3A1	C3A	H3A2	109.5	108.2
H3A1	C3A	H3A3	109.4	106.3
H3A2	C3A	H3A3	109.5	108.5
O1A	PA	O2A	117.9	114.3
O1A	PA	O6	110.0	114.2
O1A	PA	O5	110.2	114.6
PA	O2A	HO2A	109.5	118.9
O2A	PA	O6	108.0	103.3
O2A	PA	O5	108.9	104.6
C3	O3A	HO3A	109.5	106.1
O3A	C3	C4	108.2	107.6
O3A	C3	C2	109.8	107.6
O1B	PB	O2B	112.4	115.3
O1B	PB	O3B	113.4	115.3
O1B	PB	O6	113.0	114.6
PB	O2B	HO2B	109.5	118.9
O2B	PB	O3B	106.5	103.6
O2B	PB	O6	104.7	103.1
PB	O3B	HO3B	109.5	119.0
O3B	PB	O6	106.1	103.4
PB	O6	PA	122.5	131.0
O6	PA	O5	100.5	104.6
PA	O5	C5	121.0	119.8
O5	C5	C4	108.4	108.6
O5	C5	H51	109.8	108.0
O5	C5	H52	110.0	108.0
C4	C5	H51	109.8	111.3
C4	C5	H52	110.1	111.6
C5	C4	C3	113.9	115.6
C5	C4	H41	108.0	108.8
C5	C4	H42	107.0	109.3
H51	C5	H52	108.7	109.1
C3	C4	H41	108.0	109.4
C3	C4	H42	107.0	109.9
C4	C3	C2	110.8	114.0
H41	C4	H42	113.0	103.1
C3	C2	C1	115.2	113.8
C3	C2	H21	107.6	110.9
C3	C2	H22	106.3	110.9
C1	C2	H21	107.6	107.4
C1	C2	H22	106.3	107.3
C2	C1	O1	120.9	124.0
C2	C1	O2	120.5	112.7
H21	C2	H22	114.0	106.0
O1	C1	O2	118.6	123.3
C1	O2	HO2	109.5	114.9

Torsion Angles for DP6

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
H3A1	C3A	C3	H3A2	240.0	120.9
H3A1	C3A	C3	H3A3	120.0	242.2
H3A2	C3A	C3	H3A3	240.0	121.4
C3A	C3	O3A	HO3A	37.9	346.5
O3A	C3	C3A	C4	242.2	242.8
O3A	C3	C3A	C2	120.7	116.0
C5	C4	C3	C3A	83.1	56.9
C3A	C3	C4	H41	323.1	180.0
C3A	C3	C4	H42	201.2	292.6
C4	C3	C3A	C2	238.4	233.3
C3A	C3	C2	C1	169.4	180.0
C3A	C3	C2	H21	49.4	58.7
C3A	C3	C2	H22	286.8	301.2
C3	C3A	H3A1	H3A2	120.0	236.8
C3	C3A	H3A1	H3A3	240.0	120.5
H3A1	C3A	C3	O3A	146.1	177.6
H3A1	C3A	C3	C4	263.8	294.8
H3A1	C3A	C3	C2	25.4	61.6
H3A2	C3A	H3A1	H3A3	120.0	243.7
C3	C3A	H3A2	H3A1	240.0	122.3
C3	C3A	H3A2	H3A3	120.0	237.2
H3A2	C3A	C3	O3A	266.1	56.7
H3A2	C3A	C3	C4	23.9	174.0
H3A2	C3A	C3	C2	145.4	300.7
H3A1	C3A	H3A2	H3A3	240.0	115.0
C3	C3A	H3A3	H3A1	120.0	239.6
C3	C3A	H3A3	H3A2	240.0	123.5
H3A3	C3A	C3	O3A	26.1	295.4
H3A3	C3A	C3	C4	143.9	52.6
H3A3	C3A	C3	C2	265.5	179.3
H3A1	C3A	H3A3	H3A2	120.0	243.9
O1A	PA	O2A	HO2A	317.2	46.0
O2A	PA	O1A	O6	124.3	118.6
O2A	PA	O1A	O5	234.2	239.3
PB	O6	PA	O1A	54.6	300.0
O6	PA	O1A	O5	109.9	120.7
O1A	PA	O5	C5	44.5	180.0
O1A	PA	O2A	O6	234.7	235.3
O1A	PA	O2A	O5	126.4	126.1
PB	O6	PA	O2A	284.7	175.3
O6	PA	O2A	O5	251.7	250.8
O2A	PA	O5	C5	175.3	306.0
HO2A	O2A	PA	O6	82.5	170.6
HO2A	O2A	PA	O5	190.8	279.9
O3A	C3	C3A	H3A1	146.1	177.6
O3A	C3	C3A	H3A2	266.1	56.7
O3A	C3	C3A	H3A3	26.1	295.4
C3A	C3	O3A	C4	118.0	119.7
C3A	C3	O3A	C2	239.1	242.9
C5	C4	C3	O3A	201.5	173.6
O3A	C3	C4	H41	81.5	296.7
O3A	C3	C4	H42	319.5	49.3
C4	C3	O3A	C2	121.1	123.2
O3A	C3	C2	C1	49.2	64.5
O3A	C3	C2	H21	289.2	303.2
O3A	C3	C2	H22	166.6	185.7
HO3A	O3A	C3	C4	279.9	226.9
HO3A	O3A	C3	C2	158.8	103.6
O1B	PB	O2B	HO2B	213.4	48.4
O2B	PB	O1B	O3B	239.1	239.4
O2B	PB	O1B	O6	118.3	119.5
O1B	PB	O3B	HO3B	327.2	311.1
O3B	PB	O1B	O6	239.2	240.2
O1B	PB	O6	PA	339.5	300.0
O1B	PB	O2B	O3B	124.8	126.8
O1B	PB	O2B	O6	236.9	234.3
O2B	PB	O3B	HO3B	91.4	77.9
O3B	PB	O2B	O6	112.2	107.5
O2B	PB	O6	PA	216.9	173.9
HO2B	O2B	PB	O3B	88.6	281.6
HO2B	O2B	PB	O6	336.4	174.1
O1B	PB	O3B	O2B	235.9	233.2
O1B	PB	O3B	O6	124.6	125.9
O3B	PB	O2B	HO2B	88.6	281.6
O2B	PB	O3B	O6	248.8	252.7
O3B	PB	O6	PA	104.4	66.3
HO3B	O3B	PB	O6	202.6	185.2
O1A	PA	O6	PB	54.6	300.0
O2A	PA	O6	PB	284.7	175.3
O1B	PB	O6	O2B	122.6	126.1
O1B	PB	O6	O3B	235.1	233.7
O6	PB	O2B	HO2B	336.4	174.1
O2B	PB	O6	O3B	112.5	107.6
O6	PB	O3B	HO3B	202.6	185.2
PB	O6	PA	O5	170.7	66.1
O1A	PA	O6	O2A	129.9	124.7
O1A	PA	O6	O5	243.9	233.9
O6	PA	O2A	HO2A	82.5	170.6
O2A	PA	O6	O5	114.0	109.2
O6	PA	O5	C5	288.6	54.2
O1A	PA	O5	O2A	229.3	234.1
O1A	PA	O5	O6	116.0	125.8
O5	PA	O2A	HO2A	190.8	279.9
O2A	PA	O5	O6	246.7	251.8
PA	O5	C5	C4	197.7	180.0
PA	O5	C5	H51	317.7	300.9
PA	O5	C5	H52	77.3	58.8
C4	C5	O5	H51	240.0	239.1
C4	C5	O5	H52	120.4	121.2
O5	C5	C4	C3	179.8	178.8
O5	C5	C4	H41	299.9	55.4
O5	C5	C4	H42	61.8	303.5
H51	C5	O5	H52	240.4	242.1
C3A	C3	C4	C5	83.1	56.9
O3A	C3	C4	C5	201.5	173.6
O5	C5	C4	H51	120.0	118.8
O5	C5	C4	H52	239.6	241.0
H51	C5	C4	H52	119.6	122.2
C3	C4	C5	H41	240.0	123.4
C3	C4	C5	H42	118.1	235.3
C5	C4	C3	C2	321.9	292.8
H41	C4	C5	H42	238.1	111.9
O5	C5	H51	C4	240.9	240.9
O5	C5	H51	H52	120.4	117.2
C4	C5	H51	H52	239.6	236.4
H51	C5	C4	C3	59.9	60.0
H51	C5	C4	H41	179.9	296.6
H51	C5	C4	H42	301.8	184.6
O5	C5	H52	C4	119.4	119.3
O5	C5	H52	H51	239.7	242.8
C4	C5	H52	H51	120.3	123.5
H52	C5	C4	C3	300.2	297.8
H52	C5	C4	H41	60.2	174.3
H52	C5	C4	H42	182.2	62.4
C4	C3	C3A	H3A1	263.8	294.8
C4	C3	C3A	H3A2	23.9	174.0
C4	C3	C3A	H3A3	143.9	52.6
C3A	C3	C4	O3A	241.7	243.3
C3A	C3	C4	C2	121.2	124.1
C4	C3	O3A	HO3A	279.9	226.9
O3A	C3	C4	C2	239.5	240.8
C3	C4	C5	H51	59.9	60.0
C3	C4	C5	H52	300.2	297.8
C5	C4	C3	H41	120.0	236.9
C5	C4	C3	H42	242.0	124.3
H41	C4	C3	H42	122.0	247.5
C4	C3	C2	C1	289.7	305.3
C4	C3	C2	H21	169.6	184.0
C4	C3	C2	H22	47.1	66.4
H41	C4	C5	H51	179.9	296.6
H41	C4	C5	H52	60.2	174.3
C5	C4	H41	C3	236.4	127.1
C5	C4	H41	H42	118.2	244.0
C3	C4	H41	H42	241.8	116.9
H41	C4	C3	C2	201.9	55.9
H42	C4	C5	H51	301.8	184.6
H42	C4	C5	H52	182.2	62.4
C5	C4	H42	C3	122.5	232.1
C5	C4	H42	H41	241.2	115.6
C3	C4	H42	H41	118.8	243.5
H42	C4	C3	C2	80.0	168.5
C2	C3	C3A	H3A1	25.4	61.6
C2	C3	C3A	H3A2	145.4	300.7
C2	C3	C3A	H3A3	265.5	179.3
C3A	C3	C2	O3A	120.2	115.5
C3A	C3	C2	C4	239.7	234.7
C2	C3	O3A	HO3A	158.8	103.6
O3A	C3	C2	C4	119.5	119.3
C2	C3	C4	H41	201.9	55.9
C2	C3	C4	H42	80.0	168.5
C1	C2	C3	H21	120.0	121.3
C1	C2	C3	H22	242.6	238.9
C3	C2	C1	O1	139.8	296.7
C3	C2	C1	O2	318.6	116.8
H21	C2	C3	H22	122.6	117.5
C3	C2	C1	H21	240.0	236.8
C3	C2	C1	H22	117.4	123.1
H21	C2	C1	H22	237.4	246.4
O1	C1	C2	O2	181.2	180.0
C2	C1	O2	HO2	181.2	180.0
C3	C2	H21	C1	124.7	125.0
C3	C2	H21	H22	242.3	239.5
C1	C2	H21	H22	117.7	114.5
H21	C2	C1	O1	259.8	59.9
H21	C2	C1	O2	78.6	240.0
C3	C2	H22	C1	236.8	235.1
C3	C2	H22	H21	118.4	120.5
C1	C2	H22	H21	241.6	245.4
H22	C2	C1	O1	22.3	173.6
H22	C2	C1	O2	201.2	353.6
O1	C1	C2	H21	259.8	59.9
O1	C1	C2	H22	22.3	173.6
C2	C1	O1	O2	178.9	180.0
O1	C1	O2	HO2	0.0	0.0
O2	C1	C2	H21	78.6	240.0
O2	C1	C2	H22	201.2	353.6
C2	C1	O2	O1	181.1	180.0