PDB Chemical Component DP3

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DP3

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N2' C2' 1.508 1.469
N2' H2'1 1.020 1.009
N2' H2'2 1.020 1.008
C2' C1' 1.558 1.530
C2' H11 1.115 1.090
C2' H12 1.114 1.090
C1' N1' 1.497 1.469
C1' H1'1 1.115 1.090
C1' H1'2 1.115 1.090
N1' C 1.483 1.468
N1' H1' 1.020 1.010
C CA 1.564 1.530
C H1 1.115 1.090
C H2 1.116 1.090
CA N 1.494 1.469
CA CB 1.569 1.529
CA HA 1.114 1.090
N HN1 1.019 1.009
N HN2 1.020 1.009
CB CG 1.540 1.530
CB HB1 1.114 1.090
CB HB2 1.115 1.090
CG CD 1.540 1.530
CG HG1 1.115 1.090
CG HG2 1.115 1.090
CD NE 1.507 1.466
CD HD1 1.115 1.090
CD HD2 1.115 1.090
NE CZ 1.320 1.374
NE HNE 1.020 0.970
CZ NH2 1.362 1.303
CZ NH1 1.365 1.375
NH2 HH2 1.020 0.970
NH1 NO 1.384 1.401
NH1 HH1 1.019 0.970
NO O2 1.277 1.218
NO O3 1.271 1.218

Bond Angles for DP3

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2' N2' H2'1 113.7 106.7
C2' N2' H2'2 110.7 106.7
N2' C2' C1' 113.7 109.5
N2' C2' H11 110.7 109.5
N2' C2' H12 110.7 109.5
H2'1 N2' H2'2 110.7 106.8
C1' C2' H11 110.6 109.5
C1' C2' H12 110.6 109.4
C2' C1' N1' 114.3 109.5
C2' C1' H1'1 110.5 109.4
C2' C1' H1'2 110.5 109.4
H11 C2' H12 99.6 109.4
N1' C1' H1'1 110.4 109.5
N1' C1' H1'2 110.5 109.5
C1' N1' C 115.7 106.7
C1' N1' H1' 109.9 106.7
H1'1 C1' H1'2 99.8 109.5
C N1' H1' 109.9 106.7
N1' C CA 114.5 109.5
N1' C H1 110.4 109.5
N1' C H2 110.4 109.5
CA C H1 110.4 109.5
CA C H2 110.4 109.4
C CA N 108.3 109.4
C CA CB 114.2 109.5
C CA HA 105.9 109.5
H1 C H2 99.8 109.4
N CA CB 105.5 109.4
N CA HA 114.5 109.4
CA N HN1 108.3 106.7
CA N HN2 112.6 106.7
CB CA HA 108.6 109.5
CA CB CG 114.2 109.5
CA CB HB1 110.5 109.5
CA CB HB2 110.5 109.5
HN1 N HN2 112.7 106.6
CG CB HB1 110.5 109.5
CG CB HB2 110.5 109.5
CB CG CD 114.0 109.5
CB CG HG1 110.5 109.5
CB CG HG2 110.5 109.5
HB1 CB HB2 99.8 109.4
CD CG HG1 110.6 109.5
CD CG HG2 110.6 109.5
CG CD NE 110.7 109.5
CG CD HD1 111.7 109.5
CG CD HD2 111.7 109.5
HG1 CG HG2 99.7 109.5
NE CD HD1 111.8 109.5
NE CD HD2 111.7 109.4
CD NE CZ 127.3 120.0
CD NE HNE 105.9 120.0
HD1 CD HD2 98.6 109.5
CZ NE HNE 106.0 120.0
NE CZ NH2 116.4 120.0
NE CZ NH1 119.3 120.0
NH2 CZ NH1 124.4 120.0
CZ NH2 HH2 113.5 120.1
CZ NH1 NO 122.2 120.0
CZ NH1 HH1 107.7 120.0
NO NH1 HH1 107.7 120.0
NH1 NO O2 118.0 120.0
NH1 NO O3 123.1 120.0
O2 NO O3 118.9 120.0

Torsion Angles for DP3

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H2'1 N2' C2' H2'2 125.3 246.2
C1' C2' N2' H11 234.8 239.9
C1' C2' N2' H12 125.3 120.0
N2' C2' C1' N1' 263.2 180.0
N2' C2' C1' H1'1 28.5 300.1
N2' C2' C1' H1'2 137.9 60.0
H11 C2' N2' H12 250.5 240.0
C2' N2' H2'1 H2'2 234.7 113.8
H2'1 N2' C2' C1' 180.0 66.2
H2'1 N2' C2' H11 305.3 186.2
H2'1 N2' C2' H12 54.8 306.2
C2' N2' H2'2 H2'1 127.0 246.2
H2'2 N2' C2' C1' 54.7 180.0
H2'2 N2' C2' H11 180.0 300.0
H2'2 N2' C2' H12 289.5 60.0
C1' C2' N2' H2'1 180.0 66.2
C1' C2' N2' H2'2 54.7 180.0
N2' C2' C1' H11 125.2 120.1
N2' C2' C1' H12 234.7 240.0
H11 C2' C1' H12 109.5 119.9
N1' C1' C2' H1'1 234.7 239.9
N1' C1' C2' H1'2 125.3 120.0
C2' C1' N1' C 204.9 180.0
C2' C1' N1' H1' 79.7 293.8
H1'1 C1' C2' H1'2 250.6 240.1
H11 C2' N2' H2'1 305.3 186.2
H11 C2' N2' H2'2 180.0 300.0
N2' C2' H11 C1' 233.1 239.9
N2' C2' H11 H12 116.6 120.0
C1' C2' H11 H12 243.5 240.1
H11 C2' C1' N1' 138.0 59.9
H11 C2' C1' H1'1 263.3 180.0
H11 C2' C1' H1'2 12.7 299.9
H12 C2' N2' H2'1 54.8 306.2
H12 C2' N2' H2'2 289.5 60.0
N2' C2' H12 C1' 126.9 120.0
N2' C2' H12 H11 243.4 240.0
C1' C2' H12 H11 116.5 119.9
H12 C2' C1' N1' 28.5 300.0
H12 C2' C1' H1'1 153.8 60.1
H12 C2' C1' H1'2 263.2 180.0
N1' C1' C2' H11 138.0 59.9
N1' C1' C2' H12 28.5 300.0
C2' C1' N1' H1'1 125.3 120.0
C2' C1' N1' H1'2 234.7 240.0
H1'1 C1' N1' H1'2 109.4 120.0
C N1' C1' H1' 125.2 246.2
C1' N1' C CA 164.9 180.0
C1' N1' C H1 290.2 300.1
C1' N1' C H2 39.6 60.0
H1'1 C1' C2' H11 263.3 180.0
H1'1 C1' C2' H12 153.8 60.1
C2' C1' H1'1 N1' 232.6 239.9
C2' C1' H1'1 H1'2 116.3 119.9
N1' C1' H1'1 H1'2 243.7 240.0
H1'1 C1' N1' C 79.6 60.0
H1'1 C1' N1' H1' 314.4 173.8
H1'2 C1' C2' H11 12.7 299.9
H1'2 C1' C2' H12 263.2 180.0
C2' C1' H1'2 N1' 127.4 120.0
C2' C1' H1'2 H1'1 243.7 240.1
N1' C1' H1'2 H1'1 116.2 120.0
H1'2 C1' N1' C 330.2 300.0
H1'2 C1' N1' H1' 205.0 53.8
C N1' C1' H1'1 79.6 60.0
C N1' C1' H1'2 330.2 300.0
C1' N1' C H1' 234.8 113.8
CA C N1' H1 234.7 239.9
CA C N1' H2 125.3 120.0
N1' C CA N 107.6 55.0
N1' C CA CB 224.9 175.0
N1' C CA HA 344.4 295.0
H1 C N1' H2 250.6 240.0
H1' N1' C1' H1'1 314.4 173.8
H1' N1' C1' H1'2 205.0 53.8
C1' N1' H1' C 128.4 246.2
H1' N1' C CA 290.1 66.2
H1' N1' C H1 55.4 186.3
H1' N1' C H2 164.8 306.2
CA C N1' H1' 290.1 66.2
N1' C CA H1 125.3 120.1
N1' C CA H2 234.7 240.0
H1 C CA H2 109.4 119.9
N CA C CB 242.7 240.0
N CA C HA 123.2 120.0
C CA N HN1 180.0 306.2
C CA N HN2 54.7 60.0
CB CA C HA 240.5 239.9
C CA CB CG 85.8 175.0
C CA CB HB1 211.1 295.1
C CA CB HB2 320.6 55.0
H1 C N1' H1' 55.4 186.3
N1' C H1 CA 232.4 239.9
N1' C H1 H2 116.2 120.0
CA C H1 H2 243.8 240.1
H1 C CA N 342.3 295.0
H1 C CA CB 99.6 54.9
H1 C CA HA 219.1 175.0
H2 C N1' H1' 164.8 306.2
N1' C H2 CA 127.6 120.0
N1' C H2 H1 243.8 240.0
CA C H2 H1 116.2 120.0
H2 C CA N 232.9 175.0
H2 C CA CB 350.2 295.0
H2 C CA HA 109.7 55.1
N CA C H1 342.3 295.0
N CA C H2 232.9 175.0
C CA N CB 122.7 120.0
C CA N HA 242.1 240.0
CB CA N HA 119.4 120.0
N CA CB CG 204.7 295.0
N CA CB HB1 330.0 55.0
N CA CB HB2 79.5 175.0
HN1 N CA HN2 125.3 246.3
CB CA C H1 99.6 54.9
CB CA C H2 350.2 295.0
C CA CB N 241.1 240.0
C CA CB HA 117.9 120.1
N CA CB HA 236.8 240.0
CB CA N HN1 57.3 186.2
CB CA N HN2 292.0 300.0
CG CB CA HB1 234.7 239.9
CG CB CA HB2 125.2 120.0
CA CB CG CD 65.0 180.0
CA CB CG HG1 190.2 300.0
CA CB CG HG2 299.6 60.0
HB1 CB CA HB2 250.5 240.0
HA CA C H1 219.1 175.0
HA CA C H2 109.7 55.1
C CA HA N 119.3 120.0
C CA HA CB 236.9 239.9
N CA HA CB 117.7 120.0
HA CA N HN1 297.9 66.2
HA CA N HN2 172.6 180.0
HA CA CB CG 327.9 54.9
HA CA CB HB1 93.2 175.0
HA CA CB HB2 202.7 295.0
HN1 N CA CB 57.3 186.2
HN1 N CA HA 297.9 66.2
CA N HN1 HN2 234.8 113.8
HN2 N CA CB 292.0 300.0
HN2 N CA HA 172.6 180.0
CA N HN2 HN1 122.9 246.2
CG CB CA HA 327.9 54.9
CA CB CG HB1 125.3 120.1
CA CB CG HB2 234.8 240.0
HB1 CB CG HB2 109.5 120.0
CD CG CB HG1 234.7 240.0
CD CG CB HG2 125.3 120.0
CB CG CD NE 55.8 180.0
CB CG CD HD1 181.1 300.0
CB CG CD HD2 290.6 60.0
HG1 CG CB HG2 250.6 240.0
HB1 CB CA HA 93.2 175.0
CA CB HB1 CG 232.7 240.0
CA CB HB1 HB2 116.3 120.0
CG CB HB1 HB2 243.7 240.0
HB1 CB CG CD 299.7 59.9
HB1 CB CG HG1 65.0 180.0
HB1 CB CG HG2 174.4 300.0
HB2 CB CA HA 202.7 295.0
CA CB HB2 CG 127.3 120.0
CA CB HB2 HB1 243.7 240.0
CG CB HB2 HB1 116.4 120.0
HB2 CB CG CD 190.2 300.0
HB2 CB CG HG1 315.5 60.0
HB2 CB CG HG2 64.9 180.0
CD CG CB HB1 299.7 59.9
CD CG CB HB2 190.2 300.0
CB CG CD HG1 125.2 120.0
CB CG CD HG2 234.7 240.0
HG1 CG CD HG2 109.5 120.0
NE CD CG HD1 234.7 240.0
NE CD CG HD2 125.3 119.9
CG CD NE CZ 93.1 180.0
CG CD NE HNE 327.9 0.0
HD1 CD CG HD2 250.5 240.0
HG1 CG CB HB1 65.0 180.0
HG1 CG CB HB2 315.5 60.0
CB CG HG1 CD 232.8 240.0
CB CG HG1 HG2 116.3 120.0
CD CG HG1 HG2 243.5 240.0
HG1 CG CD NE 290.6 60.0
HG1 CG CD HD1 55.9 180.0
HG1 CG CD HD2 165.3 300.0
HG2 CG CB HB1 174.4 300.0
HG2 CG CB HB2 64.9 180.0
CB CG HG2 CD 127.2 120.0
CB CG HG2 HG1 243.7 240.0
CD CG HG2 HG1 116.5 120.0
HG2 CG CD NE 181.1 299.9
HG2 CG CD HD1 306.4 60.0
HG2 CG CD HD2 55.8 180.0
NE CD CG HG1 290.6 60.0
NE CD CG HG2 181.1 299.9
CG CD NE HD1 125.3 120.0
CG CD NE HD2 234.7 240.0
HD1 CD NE HD2 109.5 120.0
CZ NE CD HNE 125.3 180.0
CD NE CZ NH2 179.8 0.0
CD NE CZ NH1 359.7 180.0
HD1 CD CG HG1 55.9 180.0
HD1 CD CG HG2 306.4 60.0
CG CD HD1 NE 235.3 240.0
CG CD HD1 HD2 117.6 120.0
NE CD HD1 HD2 242.3 240.0
HD1 CD NE CZ 327.9 60.0
HD1 CD NE HNE 202.6 240.0
HD2 CD CG HG1 165.3 300.0
HD2 CD CG HG2 55.8 180.0
CG CD HD2 NE 124.7 120.0
CG CD HD2 HD1 242.4 240.0
NE CD HD2 HD1 117.7 120.0
HD2 CD NE CZ 218.4 300.0
HD2 CD NE HNE 93.1 120.0
CZ NE CD HD1 327.9 60.0
CZ NE CD HD2 218.4 300.0
CD NE CZ HNE 234.8 180.0
NH2 CZ NE NH1 180.1 180.0
NE CZ NH2 HH2 78.0 186.6
NE CZ NH1 NO 188.7 186.1
NE CZ NH1 HH1 63.4 6.1
HNE NE CD HD1 202.6 240.0
HNE NE CD HD2 93.1 120.0
CD NE HNE CZ 137.5 180.0
HNE NE CZ NH2 305.1 180.0
HNE NE CZ NH1 125.0 360.0
NH2 CZ NE HNE 305.1 180.0
NE CZ NH2 NH1 179.9 180.0
NH2 CZ NH1 NO 8.6 6.1
NH2 CZ NH1 HH1 243.3 186.1
NH1 CZ NE HNE 125.0 360.0
NE CZ NH1 NH2 180.1 180.0
NH1 CZ NH2 HH2 258.0 6.6
NO NH1 CZ HH1 125.3 180.0
CZ NH1 NO O2 178.9 212.5
CZ NH1 NO O3 358.8 32.5
HH2 NH2 CZ NH1 258.0 6.6
CZ NH1 NO HH1 234.7 180.0
O2 NO NH1 O3 180.1 180.0
CZ NH1 HH1 NO 133.5 180.0
HH1 NH1 NO O2 304.2 32.5
HH1 NH1 NO O3 124.1 212.5
O2 NO NH1 HH1 304.2 32.5
NH1 NO O2 O3 179.9 180.0
O3 NO NH1 HH1 124.1 212.5
NH1 NO O3 O2 180.1 180.0