PDB Chemical Component DP2

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DP2

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 O2 1.271 1.462
N1 O3 1.294 1.463
N1 NH1 1.349 1.366
O2 HO2 0.950 0.968
O3 HO3 0.950 0.967
N CA 1.489 1.465
N C' 1.376 1.348
N HN 1.019 0.970
CA C 1.539 1.506
CA CB 1.528 1.528
CA HA 1.116 1.090
C N2 1.345 1.348
C O 1.207 1.213
N2 HN21 1.019 0.970
N2 HN22 1.021 0.970
CB CG 1.531 1.529
CB HB1 1.115 1.090
CB HB2 1.114 1.090
CG CD 1.539 1.530
CG HG1 1.115 1.089
CG HG2 1.115 1.090
CD NE 1.469 1.463
CD HD1 1.115 1.090
CD HD2 1.115 1.090
NE CZ 1.313 1.375
NE HNE 1.021 0.970
CZ NH1 1.335 1.374
CZ NH2 1.352 1.302
NH1 HH1 1.021 0.970
NH2 HH2 1.020 0.970
N' CA' 1.506 1.469
N' HN'1 1.020 1.009
N' HN'2 1.019 1.009
CA' C' 1.547 1.507
CA' CB' 1.552 1.530
CA' HA' 1.114 1.090
C' O' 1.261 1.213
CB' CG' 1.558 1.530
CB' HB'1 1.115 1.089
CB' HB'2 1.116 1.089
CG' CD' 1.542 1.530
CG' HG'1 1.115 1.090
CG' HG'2 1.115 1.091
CD' CE' 1.551 1.530
CD' HD'1 1.115 1.090
CD' HD'2 1.115 1.090
CE' NZ' 1.482 1.469
CE' HE'1 1.115 1.089
CE' HE'2 1.115 1.090
NZ' HZ'1 1.020 1.009
NZ' HZ'2 1.021 1.009

Bond Angles for DP2

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O2 N1 O3 120.4 106.7
O2 N1 NH1 117.7 106.7
N1 O2 HO2 120.4 106.8
O3 N1 NH1 121.9 106.8
N1 O3 HO3 120.4 106.8
N1 NH1 CZ 126.1 120.0
N1 NH1 HH1 106.3 119.9
CA N C' 121.5 120.0
CA N HN 123.3 120.0
N CA C 111.3 109.4
N CA CB 109.7 109.5
N CA HA 108.2 109.5
C' N HN 115.2 120.0
N C' CA' 118.0 120.0
N C' O' 119.9 120.0
C CA CB 109.8 109.6
C CA HA 108.1 109.4
CA C N2 121.4 120.0
CA C O 122.2 120.0
CB CA HA 109.8 109.4
CA CB CG 113.0 109.5
CA CB HB1 110.9 109.4
CA CB HB2 110.9 109.4
N2 C O 116.4 120.0
C N2 HN21 116.5 120.0
C N2 HN22 121.4 120.0
HN21 N2 HN22 122.2 120.0
CG CB HB1 110.9 109.5
CG CB HB2 110.9 109.5
CB CG CD 109.2 109.6
CB CG HG1 112.3 109.5
CB CG HG2 112.3 109.4
HB1 CB HB2 99.4 109.4
CD CG HG1 112.3 109.5
CD CG HG2 112.3 109.4
CG CD NE 108.3 109.6
CG CD HD1 112.6 109.5
CG CD HD2 112.6 109.4
HG1 CG HG2 98.1 109.5
NE CD HD1 112.6 109.5
NE CD HD2 112.6 109.5
CD NE CZ 126.6 120.1
CD NE HNE 106.2 120.0
HD1 CD HD2 97.8 109.4
CZ NE HNE 106.1 120.0
NE CZ NH1 119.3 120.0
NE CZ NH2 118.0 120.0
NH1 CZ NH2 122.7 120.0
CZ NH1 HH1 106.4 120.1
CZ NH2 HH2 116.8 120.0
CA' N' HN'1 109.5 106.7
CA' N' HN'2 112.2 106.6
N' CA' C' 109.5 109.5
N' CA' CB' 108.3 109.5
N' CA' HA' 111.8 109.5
HN'1 N' HN'2 112.2 106.7
C' CA' CB' 113.6 109.5
C' CA' HA' 106.2 109.5
CA' C' O' 122.0 120.0
CB' CA' HA' 107.5 109.5
CA' CB' CG' 115.6 109.5
CA' CB' HB'1 110.0 109.5
CA' CB' HB'2 110.0 109.5
CG' CB' HB'1 110.0 109.4
CG' CB' HB'2 110.0 109.5
CB' CG' CD' 109.4 109.5
CB' CG' HG'1 112.2 109.5
CB' CG' HG'2 112.2 109.4
HB'1 CB' HB'2 100.2 109.5
CD' CG' HG'1 112.2 109.5
CD' CG' HG'2 112.2 109.5
CG' CD' CE' 113.2 109.4
CG' CD' HD'1 110.9 109.5
CG' CD' HD'2 110.9 109.4
HG'1 CG' HG'2 98.2 109.4
CE' CD' HD'1 110.9 109.5
CE' CD' HD'2 110.9 109.5
CD' CE' NZ' 107.4 109.5
CD' CE' HE'1 112.9 109.5
CD' CE' HE'2 113.0 109.5
HD'1 CD' HD'2 99.4 109.5
NZ' CE' HE'1 113.0 109.5
NZ' CE' HE'2 113.0 109.4
CE' NZ' HZ'1 107.4 106.7
CE' NZ' HZ'2 113.0 106.7
HE'1 CE' HE'2 97.5 109.5
HZ'1 NZ' HZ'2 112.9 106.7

Torsion Angles for DP2

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O3 N1 O2 NH1 180.8 246.2
O2 N1 O3 HO3 180.0 293.7
O2 N1 NH1 CZ 153.3 120.0
O2 N1 NH1 HH1 28.1 300.0
O2 N1 O3 NH1 179.1 113.8
O3 N1 O2 HO2 179.9 66.2
O3 N1 NH1 CZ 332.5 233.8
O3 N1 NH1 HH1 207.2 53.8
O2 N1 NH1 O3 180.8 246.2
NH1 N1 O2 HO2 359.1 180.0
NH1 N1 O3 HO3 0.9 179.9
NE CZ NH1 N1 195.5 180.0
N1 NH1 CZ NH2 15.3 360.0
CZ NH1 N1 HH1 125.2 180.0
HO2 O2 N1 O3 179.9 66.2
HO2 O2 N1 NH1 359.1 180.0
HO3 O3 N1 NH1 0.9 179.9
C' N CA HN 180.0 180.1
CA N C' CA' 178.2 180.0
CA N C' O' 0.3 0.0
C CA N CB 238.3 239.9
C CA N HA 118.6 119.9
N CA C N2 55.1 30.1
N CA C O 235.7 210.0
CB CA N HA 240.3 240.0
N CA CB CG 161.7 60.0
N CA CB HB1 286.9 180.1
N CA CB HB2 36.4 300.0
CA N C' HN 180.0 179.9
C' N CA C 65.1 89.9
C' N CA CB 186.8 210.0
C' N CA HA 306.5 330.0
N' CA' C' N 218.7 210.0
N C' CA' CB' 97.4 90.0
N C' CA' HA' 339.5 330.0
CA' C' N O' 177.8 180.0
CA N HN C' 180.0 180.1
HN N CA C 245.1 269.9
HN N CA CB 6.8 30.0
HN N CA HA 126.5 149.9
HN N C' CA' 358.1 0.1
HN N C' O' 180.3 180.1
C CA N C' 65.1 89.9
C CA N HN 245.1 269.9
N CA C CB 121.6 120.1
N CA C HA 241.3 240.0
CB CA C HA 119.7 120.0
C CA CB CG 284.2 180.0
C CA CB HB1 49.5 300.1
C CA CB HB2 159.0 60.0
N2 C CA O 179.4 180.0
CA C N2 HN21 0.5 180.0
CA C N2 HN22 180.0 360.0
CB CA N C' 186.8 210.0
CB CA N HN 6.8 30.0
N CA CB C 237.4 240.0
N CA CB HA 118.8 120.0
C CA CB HA 241.4 240.0
CB CA C N2 293.5 270.0
CB CA C O 114.1 90.0
CG CB CA HB1 234.7 239.9
CG CB CA HB2 125.3 120.0
CA CB CG CD 191.0 180.0
CA CB CG HG1 316.3 300.1
CA CB CG HG2 65.8 60.0
HB1 CB CA HB2 250.5 240.1
HA CA N C' 306.5 330.0
HA CA N HN 126.5 149.9
N CA HA C 120.6 119.9
N CA HA CB 240.3 240.0
C CA HA CB 119.7 120.0
HA CA C N2 173.8 150.0
HA CA C O 354.4 330.0
HA CA CB CG 42.9 300.0
HA CA CB HB1 168.1 60.0
HA CA CB HB2 277.6 179.9
N2 C CA CB 293.5 270.0
N2 C CA HA 173.8 150.0
CA C N2 O 180.6 180.0
HN21 N2 C HN22 180.5 180.0
O C CA CB 114.1 90.0
O C CA HA 354.4 330.0
CA C O N2 179.4 180.0
O C N2 HN21 180.0 360.0
O C N2 HN22 359.5 180.0
HN21 N2 C O 180.0 360.0
C N2 HN21 HN22 179.5 180.0
HN22 N2 C O 359.5 180.0
C N2 HN22 HN21 180.5 180.0
CG CB CA HA 42.9 300.0
CA CB CG HB1 125.2 120.0
CA CB CG HB2 234.7 240.0
HB1 CB CG HB2 109.5 120.0
CD CG CB HG1 234.7 239.9
CD CG CB HG2 125.3 119.9
CB CG CD NE 161.8 180.0
CB CG CD HD1 287.0 300.1
CB CG CD HD2 36.5 60.0
HG1 CG CB HG2 250.6 240.0
HB1 CB CA HA 168.1 60.0
CA CB HB1 CG 233.6 239.9
CA CB HB1 HB2 116.8 119.9
CG CB HB1 HB2 243.2 240.0
HB1 CB CG CD 65.8 59.9
HB1 CB CG HG1 191.1 180.0
HB1 CB CG HG2 300.5 300.0
HB2 CB CA HA 277.6 179.9
CA CB HB2 CG 126.5 120.1
CA CB HB2 HB1 243.2 240.1
CG CB HB2 HB1 116.8 120.0
HB2 CB CG CD 316.3 300.0
HB2 CB CG HG1 81.6 60.0
HB2 CB CG HG2 191.0 180.0
CD CG CB HB1 65.8 59.9
CD CG CB HB2 316.3 300.0
CB CG CD HG1 125.3 120.1
CB CG CD HG2 234.8 240.1
HG1 CG CD HG2 109.5 120.0
NE CD CG HD1 234.8 239.9
NE CD CG HD2 125.3 120.0
CG CD NE CZ 130.4 180.1
CG CD NE HNE 5.2 0.0
HD1 CD CG HD2 250.5 240.1
HG1 CG CB HB1 191.1 180.0
HG1 CG CB HB2 81.6 60.0
CB CG HG1 CD 236.4 239.9
CB CG HG1 HG2 118.2 119.9
CD CG HG1 HG2 241.8 240.1
HG1 CG CD NE 36.5 59.9
HG1 CG CD HD1 161.7 180.0
HG1 CG CD HD2 271.2 299.9
HG2 CG CB HB1 300.5 300.0
HG2 CG CB HB2 191.0 180.0
CB CG HG2 CD 123.6 120.0
CB CG HG2 HG1 241.8 240.0
CD CG HG2 HG1 118.2 120.0
HG2 CG CD NE 287.0 300.0
HG2 CG CD HD1 52.3 60.1
HG2 CG CD HD2 161.7 179.9
NE CD CG HG1 36.5 59.9
NE CD CG HG2 287.0 300.0
CG CD NE HD1 125.2 120.1
CG CD NE HD2 234.7 240.0
HD1 CD NE HD2 109.5 120.0
CZ NE CD HNE 125.2 180.0
CD NE CZ NH1 360.0 180.0
CD NE CZ NH2 180.2 0.0
HD1 CD CG HG1 161.7 180.0
HD1 CD CG HG2 52.3 60.1
CG CD HD1 NE 237.2 239.9
CG CD HD1 HD2 118.6 119.9
NE CD HD1 HD2 241.4 240.0
HD1 CD NE CZ 5.2 60.0
HD1 CD NE HNE 240.0 240.0
HD2 CD CG HG1 271.2 299.9
HD2 CD CG HG2 161.7 179.9
CG CD HD2 NE 122.9 120.1
CG CD HD2 HD1 241.5 240.1
NE CD HD2 HD1 118.6 120.0
HD2 CD NE CZ 255.7 300.0
HD2 CD NE HNE 130.5 120.0
N1 NH1 CZ NE 195.5 180.0
CZ NE CD HD1 5.2 60.0
CZ NE CD HD2 255.7 300.0
CD NE CZ HNE 234.8 180.0
NH1 CZ NE NH2 179.8 180.0
NE CZ NH1 HH1 320.7 360.0
NE CZ NH2 HH2 70.4 180.0
HNE NE CD HD1 240.0 240.0
HNE NE CD HD2 130.5 120.0
CD NE HNE CZ 137.0 180.0
HNE NE CZ NH1 125.2 0.0
HNE NE CZ NH2 305.4 180.1
N1 NH1 CZ HH1 234.8 180.0
NH1 CZ NE HNE 125.2 0.0
NE CZ NH1 NH2 180.2 180.0
NH1 CZ NH2 HH2 250.6 0.1
NH2 CZ NE HNE 305.4 180.1
NE CZ NH2 NH1 179.8 180.0
NH2 CZ NH1 HH1 140.5 180.0
N1 NH1 HH1 CZ 136.5 180.0
HH1 NH1 CZ NH2 140.5 180.0
N C' CA' N' 218.7 210.0
HN'1 N' CA' HN'2 125.3 246.2
C' CA' N' CB' 235.6 240.0
C' CA' N' HA' 117.4 120.0
N' CA' C' O' 36.5 30.0
CB' CA' N' HA' 241.8 240.0
N' CA' CB' CG' 56.7 60.0
N' CA' CB' HB'1 182.1 300.1
N' CA' CB' HB'2 291.5 180.0
CA' N' HN'1 HN'2 234.7 113.7
HN'1 N' CA' C' 180.0 300.0
HN'1 N' CA' CB' 304.5 60.0
HN'1 N' CA' HA' 62.7 180.0
CA' N' HN'2 HN'1 123.8 246.3
HN'2 N' CA' C' 54.7 53.8
HN'2 N' CA' CB' 179.1 173.8
HN'2 N' CA' HA' 297.3 293.8
CA' C' N HN 358.1 0.1
N C' CA' O' 182.2 180.0
C' CA' N' HN'1 180.0 300.0
C' CA' N' HN'2 54.7 53.8
N' CA' C' CB' 121.2 120.0
N' CA' C' HA' 239.2 240.0
CB' CA' C' HA' 117.9 120.0
C' CA' CB' CG' 178.6 180.0
C' CA' CB' HB'1 303.9 60.1
C' CA' CB' HB'2 53.4 300.0
CB' CA' N' HN'1 304.5 60.0
CB' CA' N' HN'2 179.1 173.8
N' CA' CB' C' 238.1 240.0
N' CA' CB' HA' 120.9 120.0
C' CA' CB' HA' 242.8 240.0
CB' CA' C' O' 275.2 270.0
CG' CB' CA' HB'1 234.7 120.0
CG' CB' CA' HB'2 125.3 240.0
CA' CB' CG' CD' 136.1 180.0
CA' CB' CG' HG'1 261.4 60.0
CA' CB' CG' HG'2 10.9 300.0
HB'1 CB' CA' HB'2 250.6 120.0
HA' CA' N' HN'1 62.7 180.0
HA' CA' N' HN'2 297.3 293.8
N' CA' HA' C' 119.3 120.0
N' CA' HA' CB' 241.3 240.0
C' CA' HA' CB' 121.9 120.0
HA' CA' C' O' 157.3 150.0
HA' CA' CB' CG' 295.8 300.0
HA' CA' CB' HB'1 61.1 180.0
HA' CA' CB' HB'2 170.6 60.0
O' C' N HN 180.3 180.1
N C' O' CA' 177.7 180.0
O' C' CA' CB' 275.2 270.0
O' C' CA' HA' 157.3 150.0
CG' CB' CA' HA' 295.8 300.0
CA' CB' CG' HB'1 125.3 240.0
CA' CB' CG' HB'2 234.7 120.0
HB'1 CB' CG' HB'2 109.4 240.0
CD' CG' CB' HG'1 234.8 120.1
CD' CG' CB' HG'2 125.3 240.0
CB' CG' CD' CE' 166.6 180.0
CB' CG' CD' HD'1 291.9 60.0
CB' CG' CD' HD'2 41.3 300.0
HG'1 CG' CB' HG'2 250.5 120.0
HB'1 CB' CA' HA' 61.1 180.0
CA' CB' HB'1 CG' 231.6 120.0
CA' CB' HB'1 HB'2 115.8 240.0
CG' CB' HB'1 HB'2 244.2 120.0
HB'1 CB' CG' CD' 10.8 300.0
HB'1 CB' CG' HG'1 136.1 179.9
HB'1 CB' CG' HG'2 245.6 60.0
HB'2 CB' CA' HA' 170.6 60.0
CA' CB' HB'2 CG' 128.4 240.0
CA' CB' HB'2 HB'1 244.2 120.0
CG' CB' HB'2 HB'1 115.8 240.0
HB'2 CB' CG' CD' 261.4 60.0
HB'2 CB' CG' HG'1 26.6 300.0
HB'2 CB' CG' HG'2 136.1 180.0
CD' CG' CB' HB'1 10.8 300.0
CD' CG' CB' HB'2 261.4 60.0
CB' CG' CD' HG'1 125.2 240.0
CB' CG' CD' HG'2 234.7 119.9
HG'1 CG' CD' HG'2 109.5 240.0
CE' CD' CG' HD'1 234.7 120.0
CE' CD' CG' HD'2 125.3 240.0
CG' CD' CE' NZ' 224.5 179.9
CG' CD' CE' HE'1 349.7 300.0
CG' CD' CE' HE'2 99.2 60.0
HD'1 CD' CG' HD'2 250.6 120.0
HG'1 CG' CB' HB'1 136.1 179.9
HG'1 CG' CB' HB'2 26.6 300.0
CB' CG' HG'1 CD' 236.4 120.0
CB' CG' HG'1 HG'2 118.2 240.0
CD' CG' HG'1 HG'2 241.8 120.0
HG'1 CG' CD' CE' 41.4 300.0
HG'1 CG' CD' HD'1 166.7 180.0
HG'1 CG' CD' HD'2 276.1 60.0
HG'2 CG' CB' HB'1 245.6 60.0
HG'2 CG' CB' HB'2 136.1 180.0
CB' CG' HG'2 CD' 123.7 240.0
CB' CG' HG'2 HG'1 241.9 120.0
CD' CG' HG'2 HG'1 118.2 239.9
HG'2 CG' CD' CE' 291.8 60.0
HG'2 CG' CD' HD'1 57.2 300.0
HG'2 CG' CD' HD'2 166.6 180.0
CE' CD' CG' HG'1 41.4 300.0
CE' CD' CG' HG'2 291.8 60.0
CG' CD' CE' HD'1 125.3 240.0
CG' CD' CE' HD'2 234.7 120.0
HD'1 CD' CE' HD'2 109.5 240.0
NZ' CE' CD' HE'1 234.8 240.0
NZ' CE' CD' HE'2 125.3 120.0
CD' CE' NZ' HZ'1 180.0 180.0
CD' CE' NZ' HZ'2 54.7 293.8
HE'1 CE' CD' HE'2 250.5 240.0
HD'1 CD' CG' HG'1 166.7 180.0
HD'1 CD' CG' HG'2 57.2 300.0
CG' CD' HD'1 CE' 233.4 120.0
CG' CD' HD'1 HD'2 116.7 240.0
CE' CD' HD'1 HD'2 243.3 120.0
HD'1 CD' CE' NZ' 99.2 300.0
HD'1 CD' CE' HE'1 224.4 60.0
HD'1 CD' CE' HE'2 333.9 180.0
HD'2 CD' CG' HG'1 276.1 60.0
HD'2 CD' CG' HG'2 166.6 180.0
CG' CD' HD'2 CE' 126.5 240.0
CG' CD' HD'2 HD'1 243.3 120.0
CE' CD' HD'2 HD'1 116.8 240.0
HD'2 CD' CE' NZ' 349.7 60.0
HD'2 CD' CE' HE'1 114.9 180.0
HD'2 CD' CE' HE'2 224.5 300.0
NZ' CE' CD' HD'1 99.2 300.0
NZ' CE' CD' HD'2 349.7 60.0
CD' CE' NZ' HE'1 125.2 120.1
CD' CE' NZ' HE'2 234.7 240.0
HE'1 CE' NZ' HE'2 109.5 120.0
HZ'1 NZ' CE' HZ'2 125.2 246.2
HE'1 CE' CD' HD'1 224.4 60.0
HE'1 CE' CD' HD'2 114.9 180.0
CD' CE' HE'1 NZ' 237.8 240.0
CD' CE' HE'1 HE'2 118.9 120.0
NZ' CE' HE'1 HE'2 241.1 240.0
HE'1 CE' NZ' HZ'1 54.8 60.0
HE'1 CE' NZ' HZ'2 289.5 173.8
HE'2 CE' CD' HD'1 333.9 180.0
HE'2 CE' CD' HD'2 224.5 300.0
CD' CE' HE'2 NZ' 122.2 120.0
CD' CE' HE'2 HE'1 241.1 240.0
NZ' CE' HE'2 HE'1 118.9 120.0
HE'2 CE' NZ' HZ'1 305.2 300.0
HE'2 CE' NZ' HZ'2 180.0 53.8
HZ'1 NZ' CE' HE'1 54.8 60.0
HZ'1 NZ' CE' HE'2 305.2 300.0
CE' NZ' HZ'1 HZ'2 234.7 113.8
HZ'2 NZ' CE' HE'1 289.5 173.8
HZ'2 NZ' CE' HE'2 180.0 53.8
CE' NZ' HZ'2 HZ'1 122.2 246.2