PDB Chemical Component DP1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DP1

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
NH2 CZ 1.295 1.304
NH2 HH2 1.020 0.969
CZ NH1 1.275 1.375
CZ NE 1.321 1.374
NH1 NO 1.374 1.401
NH1 HH1 1.020 0.970
NO O2 1.220 1.218
NO O3 1.214 1.218
NE CD 1.492 1.465
NE HNE 1.019 0.970
CD CG 1.538 1.530
CD HD1 1.114 1.091
CD HD2 1.114 1.090
CG CB 1.535 1.529
CG HG1 1.115 1.091
CG HG2 1.115 1.090
CB CA 1.536 1.530
CB HB1 1.115 1.091
CB HB2 1.115 1.090
CA N 1.466 1.469
CA C 1.536 1.506
CA HA 1.115 1.090
N HN1 1.020 1.009
N HN2 1.020 1.009
C O 1.233 1.212
C N' 1.328 1.348
N' CA' 1.470 1.465
N' HN' 1.020 0.970
CA' C' 1.560 1.508
CA' CB' 1.548 1.530
CA' HA' 1.115 1.090
C' O' 1.248 1.213
C' N1' 1.341 1.347
N1' H1'1 1.019 0.970
N1' H1'2 1.020 0.970
CB' C1 1.554 1.530
CB' HB'1 1.114 1.091
CB' HB'2 1.115 1.090
C1 N1 1.473 1.469
C1 H11 1.116 1.089
C1 H12 1.115 1.090
N1 HN11 1.020 1.008
N1 HN12 1.021 1.009

Bond Angles for DP1

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CZ NH2 HH2 112.6 120.0
NH2 CZ NH1 122.2 120.0
NH2 CZ NE 117.6 120.0
NH1 CZ NE 120.2 120.0
CZ NH1 NO 127.0 120.0
CZ NH1 HH1 106.0 120.0
CZ NE CD 125.0 120.0
CZ NE HNE 106.8 120.0
NO NH1 HH1 106.1 120.0
NH1 NO O2 119.5 120.0
NH1 NO O3 120.6 120.0
O2 NO O3 119.8 120.0
CD NE HNE 106.8 119.9
NE CD CG 108.8 109.5
NE CD HD1 112.5 109.5
NE CD HD2 112.4 109.5
CG CD HD1 112.4 109.5
CG CD HD2 112.4 109.5
CD CG CB 111.8 109.5
CD CG HG1 111.4 109.5
CD CG HG2 111.4 109.5
HD1 CD HD2 98.0 109.4
CB CG HG1 111.3 109.5
CB CG HG2 111.3 109.5
CG CB CA 112.2 109.5
CG CB HB1 111.2 109.5
CG CB HB2 111.2 109.5
HG1 CG HG2 99.0 109.4
CA CB HB1 111.2 109.5
CA CB HB2 111.2 109.5
CB CA N 108.3 109.5
CB CA C 110.8 109.5
CB CA HA 110.3 109.4
HB1 CB HB2 99.2 109.4
N CA C 111.9 109.4
N CA HA 109.1 109.5
CA N HN1 108.2 106.7
CA N HN2 112.6 106.7
C CA HA 106.4 109.5
CA C O 121.3 120.1
CA C N' 116.4 120.0
HN1 N HN2 112.7 106.7
O C N' 122.3 119.9
C N' CA' 122.0 120.0
C N' HN' 113.8 120.0
CA' N' HN' 124.3 120.0
N' CA' C' 111.4 109.5
N' CA' CB' 107.1 109.5
N' CA' HA' 111.6 109.5
C' CA' CB' 114.2 109.4
C' CA' HA' 104.0 109.5
CA' C' O' 121.5 119.9
CA' C' N1' 116.8 120.0
CB' CA' HA' 108.6 109.4
CA' CB' C1 111.2 109.5
CA' CB' HB'1 111.6 109.5
CA' CB' HB'2 111.5 109.5
O' C' N1' 121.7 120.1
C' N1' H1'1 121.7 120.1
C' N1' H1'2 116.7 120.0
H1'1 N1' H1'2 121.5 120.0
C1 CB' HB'1 111.6 109.5
C1 CB' HB'2 111.6 109.5
CB' C1 N1 110.7 109.5
CB' C1 H11 111.7 109.5
CB' C1 H12 111.8 109.5
HB'1 CB' HB'2 98.8 109.4
N1 C1 H11 111.8 109.5
N1 C1 H12 111.8 109.4
C1 N1 HN11 110.7 106.7
C1 N1 HN12 111.7 106.7
H11 C1 H12 98.6 109.5
HN11 N1 HN12 111.7 106.7

Torsion Angles for DP1

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
NH1 CZ NH2 NE 179.7 180.1
NH2 CZ NH1 NO 19.2 6.0
NH2 CZ NH1 HH1 253.9 186.1
NH2 CZ NE CD 179.6 0.1
NH2 CZ NE HNE 54.3 180.1
HH2 NH2 CZ NH1 252.2 6.7
HH2 NH2 CZ NE 72.5 186.6
NH1 CZ NH2 HH2 252.2 6.7
NH2 CZ NH1 NE 180.3 179.9
NH1 CZ NE CD 359.8 180.0
NH1 CZ NE HNE 234.5 360.0
NO NH1 CZ HH1 125.3 179.9
CZ NH1 NO O2 162.0 32.5
CZ NH1 NO O3 340.8 212.6
NE CZ NH2 HH2 72.5 186.6
NH2 CZ NE NH1 179.7 180.1
NE CZ NH1 NO 198.9 186.1
NE CZ NH1 HH1 73.6 6.2
CD NE CZ HNE 125.3 180.0
CZ NE CD CG 105.9 180.0
CZ NE CD HD1 231.1 60.0
CZ NE CD HD2 340.7 300.0
NO NH1 CZ NE 198.9 186.1
CZ NH1 NO HH1 234.7 180.1
O2 NO NH1 O3 181.2 179.9
HH1 NH1 CZ NE 73.6 6.2
CZ NH1 HH1 NO 137.3 179.9
HH1 NH1 NO O2 287.3 212.5
HH1 NH1 NO O3 106.1 32.5
O2 NO NH1 HH1 287.3 212.5
NH1 NO O2 O3 178.8 180.1
O3 NO NH1 HH1 106.1 32.5
NH1 NO O3 O2 181.2 179.9
CZ NE CD HNE 234.7 180.0
CG CD NE HD1 234.7 120.0
CG CD NE HD2 125.2 240.0
NE CD CG CB 51.6 180.0
NE CD CG HG1 176.9 60.0
NE CD CG HG2 286.4 300.1
HD1 CD NE HD2 250.5 119.9
CZ NE HNE CD 135.7 180.0
HNE NE CD CG 231.2 360.0
HNE NE CD HD1 356.4 239.9
HNE NE CD HD2 106.0 120.0
CG CD NE HNE 231.2 360.0
NE CD CG HD1 125.3 240.0
NE CD CG HD2 234.8 120.1
HD1 CD CG HD2 109.5 240.1
CB CG CD HG1 234.7 120.0
CB CG CD HG2 125.3 239.9
CD CG CB CA 69.7 180.0
CD CG CB HB1 195.0 60.0
CD CG CB HB2 304.4 300.0
HG1 CG CD HG2 250.5 119.9
HD1 CD NE HNE 356.4 239.9
NE CD HD1 CG 236.7 120.1
NE CD HD1 HD2 118.4 240.0
CG CD HD1 HD2 241.6 120.0
HD1 CD CG CB 286.4 300.0
HD1 CD CG HG1 51.6 180.0
HD1 CD CG HG2 161.1 60.1
HD2 CD NE HNE 106.0 120.0
NE CD HD2 CG 123.2 239.9
NE CD HD2 HD1 241.6 120.0
CG CD HD2 HD1 118.4 240.0
HD2 CD CG CB 176.9 59.9
HD2 CD CG HG1 302.1 299.9
HD2 CD CG HG2 51.6 180.0
CB CG CD HD1 286.4 300.0
CB CG CD HD2 176.9 59.9
CD CG CB HG1 125.3 240.0
CD CG CB HG2 234.7 120.0
HG1 CG CB HG2 109.4 240.1
CA CB CG HB1 234.8 120.0
CA CB CG HB2 125.3 239.9
CG CB CA N 210.8 295.0
CG CB CA C 87.7 175.0
CG CB CA HA 330.1 55.0
HB1 CB CG HB2 250.5 119.9
HG1 CG CD HD1 51.6 180.0
HG1 CG CD HD2 302.1 299.9
CD CG HG1 CB 234.5 120.0
CD CG HG1 HG2 117.3 240.0
CB CG HG1 HG2 242.8 120.0
HG1 CG CB CA 304.4 300.0
HG1 CG CB HB1 69.7 180.0
HG1 CG CB HB2 179.1 60.1
HG2 CG CD HD1 161.1 60.1
HG2 CG CD HD2 51.6 180.0
CD CG HG2 CB 125.5 239.9
CD CG HG2 HG1 242.7 120.0
CB CG HG2 HG1 117.2 240.0
HG2 CG CB CA 195.0 59.9
HG2 CG CB HB1 320.2 299.9
HG2 CG CB HB2 69.7 180.0
CA CB CG HG1 304.4 300.0
CA CB CG HG2 195.0 59.9
CG CB CA HB1 125.2 240.0
CG CB CA HB2 234.7 120.1
HB1 CB CA HB2 109.5 240.1
N CA CB C 123.1 120.0
N CA CB HA 240.7 240.0
CB CA N HN1 180.0 300.0
CB CA N HN2 54.7 53.8
C CA CB HA 117.6 120.0
CB CA C O 88.5 100.0
CB CA C N' 268.9 280.0
HB1 CB CG HG1 69.7 180.0
HB1 CB CG HG2 320.2 299.9
CG CB HB1 CA 234.2 120.0
CG CB HB1 HB2 117.1 240.0
CA CB HB1 HB2 242.9 120.0
HB1 CB CA N 85.6 55.0
HB1 CB CA C 322.5 295.0
HB1 CB CA HA 204.9 175.0
HB2 CB CG HG1 179.1 60.1
HB2 CB CG HG2 69.7 180.0
CG CB HB2 CA 125.9 239.9
CG CB HB2 HB1 242.9 120.0
CA CB HB2 HB1 117.1 240.0
HB2 CB CA N 336.1 174.9
HB2 CB CA C 213.0 55.0
HB2 CB CA HA 95.4 295.0
N CA CB HB1 85.6 55.0
N CA CB HB2 336.1 174.9
CB CA N C 237.6 240.0
CB CA N HA 120.0 120.0
C CA N HA 242.4 240.0
N CA C O 327.6 340.0
N CA C N' 147.9 160.0
HN1 N CA HN2 125.3 246.2
C CA CB HB1 322.5 295.0
C CA CB HB2 213.0 55.0
CB CA C N 120.9 120.0
CB CA C HA 240.1 240.0
N CA C HA 119.1 120.0
C CA N HN1 302.4 60.0
C CA N HN2 177.2 173.8
O C CA N' 179.7 180.0
CA C N' CA' 179.9 180.0
CA C N' HN' 360.0 0.0
HA CA CB HB1 204.9 175.0
HA CA CB HB2 95.4 295.0
CB CA HA N 241.2 240.0
CB CA HA C 120.3 120.0
N CA HA C 239.0 240.0
HA CA N HN1 60.0 180.0
HA CA N HN2 294.7 293.8
HA CA C O 208.5 220.0
HA CA C N' 28.8 40.0
HN1 N CA C 302.4 60.0
HN1 N CA HA 60.0 180.0
CA N HN1 HN2 234.8 113.8
HN2 N CA C 177.2 173.8
HN2 N CA HA 294.7 293.8
CA N HN2 HN1 122.8 246.2
O C CA HA 208.5 220.0
CA C O N' 180.4 180.0
O C N' CA' 0.3 360.0
O C N' HN' 180.3 180.0
N' C CA HA 28.8 40.0
CA C N' O 179.7 180.0
CA' N' C HN' 180.0 180.0
C N' CA' C' 255.8 275.0
C N' CA' CB' 130.4 155.0
C N' CA' HA' 11.6 35.0
C N' CA' HN' 180.0 180.0
C' CA' N' CB' 125.4 120.0
C' CA' N' HA' 244.2 240.0
N' CA' C' O' 97.0 0.0
N' CA' C' N1' 277.7 180.0
CB' CA' N' HA' 118.8 120.0
N' CA' CB' C1 290.6 295.0
N' CA' CB' HB'1 55.9 175.0
N' CA' CB' HB'2 165.4 55.0
C N' HN' CA' 180.0 180.0
HN' N' CA' C' 75.8 95.0
HN' N' CA' CB' 310.3 335.0
HN' N' CA' HA' 191.6 215.0
C' CA' N' HN' 75.8 95.0
N' CA' C' CB' 238.6 240.0
N' CA' C' HA' 120.4 120.0
CB' CA' C' HA' 241.8 240.1
C' CA' CB' C1 166.8 175.0
C' CA' CB' HB'1 292.1 54.9
C' CA' CB' HB'2 41.6 295.0
O' C' CA' N1' 179.3 180.0
CA' C' N1' H1'1 359.3 0.1
CA' C' N1' H1'2 180.0 180.0
CB' CA' N' HN' 310.3 335.0
N' CA' CB' C' 123.8 120.0
N' CA' CB' HA' 239.3 240.0
C' CA' CB' HA' 115.6 120.0
CB' CA' C' O' 218.4 120.0
CB' CA' C' N1' 39.1 300.0
C1 CB' CA' HB'1 234.7 120.0
C1 CB' CA' HB'2 125.2 240.0
CA' CB' C1 N1 211.4 180.0
CA' CB' C1 H11 336.6 60.0
CA' CB' C1 H12 86.1 300.0
HB'1 CB' CA' HB'2 250.5 119.9
HA' CA' N' HN' 191.6 215.0
N' CA' HA' C' 239.8 240.0
N' CA' HA' CB' 117.8 120.0
C' CA' HA' CB' 238.0 240.1
HA' CA' C' O' 336.7 240.0
HA' CA' C' N1' 157.3 59.9
HA' CA' CB' C1 51.3 55.0
HA' CA' CB' HB'1 176.6 295.0
HA' CA' CB' HB'2 286.0 175.0
O' C' CA' CB' 218.4 120.0
O' C' CA' HA' 336.7 240.0
CA' C' O' N1' 180.7 180.0
O' C' N1' H1'1 180.0 180.0
O' C' N1' H1'2 0.7 359.9
N1' C' CA' CB' 39.1 300.0
N1' C' CA' HA' 157.3 59.9
CA' C' N1' O' 179.3 180.0
H1'1 N1' C' H1'2 179.3 180.1
C' N1' H1'1 H1'2 180.8 179.9
C' N1' H1'2 H1'1 179.3 180.1
C1 CB' CA' HA' 51.3 55.0
CA' CB' C1 HB'1 125.3 240.0
CA' CB' C1 HB'2 234.8 120.0
HB'1 CB' C1 HB'2 109.5 240.1
N1 C1 CB' H11 234.8 120.0
N1 C1 CB' H12 125.3 240.0
CB' C1 N1 HN11 180.0 66.2
CB' C1 N1 HN12 54.8 180.0
H11 C1 CB' H12 250.5 120.0
HB'1 CB' CA' HA' 176.6 295.0
CA' CB' HB'1 C1 235.0 120.0
CA' CB' HB'1 HB'2 117.4 240.0
C1 CB' HB'1 HB'2 242.5 120.0
HB'1 CB' C1 N1 86.1 300.0
HB'1 CB' C1 H11 211.3 180.0
HB'1 CB' C1 H12 320.8 60.0
HB'2 CB' CA' HA' 286.0 175.0
CA' CB' HB'2 C1 125.0 240.0
CA' CB' HB'2 HB'1 242.5 120.0
C1 CB' HB'2 HB'1 117.6 240.0
HB'2 CB' C1 N1 336.6 60.0
HB'2 CB' C1 H11 101.8 300.0
HB'2 CB' C1 H12 211.3 180.0
N1 C1 CB' HB'1 86.1 300.0
N1 C1 CB' HB'2 336.6 60.0
CB' C1 N1 H11 125.2 240.0
CB' C1 N1 H12 234.7 120.0
H11 C1 N1 H12 109.5 240.0
HN11 N1 C1 HN12 125.2 246.2
H11 C1 CB' HB'1 211.3 180.0
H11 C1 CB' HB'2 101.8 300.0
CB' C1 H11 N1 235.4 120.0
CB' C1 H11 H12 117.7 240.0
N1 C1 H11 H12 242.3 120.0
H11 C1 N1 HN11 54.7 186.2
H11 C1 N1 HN12 289.5 300.0
H12 C1 CB' HB'1 320.8 60.0
H12 C1 CB' HB'2 211.3 180.0
CB' C1 H12 N1 124.7 240.0
CB' C1 H12 H11 242.4 120.0
N1 C1 H12 H11 117.7 240.0
H12 C1 N1 HN11 305.3 306.2
H12 C1 N1 HN12 180.1 60.0
HN11 N1 C1 H11 54.7 186.2
HN11 N1 C1 H12 305.3 306.2
C1 N1 HN11 HN12 234.8 113.7
HN12 N1 C1 H11 289.5 300.0
HN12 N1 C1 H12 180.1 60.0
C1 N1 HN12 HN11 124.6 246.2