PDB Chemical Component DOQ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DOQ

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
OAD	CAQ	1.240	1.209
CAQ	OAG	1.236	1.342
CAQ	CAS	1.548	1.507
OAG	HAG	0.950	0.967
CAS	CAB	1.535	1.530
CAS	CAK	1.524	1.507
CAS	HAS	1.115	1.090
CAB	HAB1	1.115	1.091
CAB	HAB2	1.115	1.090
CAB	HAB3	1.116	1.090
CAK	CAI	1.385	1.329
CAK	HAK	1.103	1.080
CAI	CAJ	1.393	1.471
CAI	HAI	1.103	1.081
CAJ	CAP	1.392	1.328
CAJ	HAJ	1.103	1.081
CAP	CAA	1.540	1.507
CAP	CAT	1.537	1.507
CAA	HAA1	1.115	1.090
CAA	HAA2	1.115	1.090
CAA	HAA3	1.115	1.090
CAT	CAL	1.517	1.543
CAT	CB	1.528	1.543
CAT	HAT	1.115	1.090
CAL	N	1.471	1.485
CAL	HAL1	1.115	1.090
CAL	HAL2	1.115	1.091
N	CA	1.473	1.485
N	HN	1.020	1.009
CA	C	1.550	1.507
CA	CB	1.514	1.546
CA	HA	1.115	1.089
C	OXT	1.237	1.209
C	O	1.234	1.342
O	HO	0.950	0.967
CB	CG	1.546	1.530
CB	HB	1.115	1.090
CG	CD	1.553	1.507
CG	HG1	1.115	1.090
CG	HG2	1.115	1.090
CD	OE2	1.238	1.343
CD	OE1	1.237	1.208
OE2	HE2	0.950	0.967

Bond Angles for DOQ

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
OAD	CAQ	OAG	119.5	120.0
OAD	CAQ	CAS	120.8	120.0
OAG	CAQ	CAS	119.7	120.0
CAQ	OAG	HAG	119.5	120.0
CAQ	CAS	CAB	110.4	109.4
CAQ	CAS	CAK	110.5	109.5
CAQ	CAS	HAS	107.3	109.5
CAB	CAS	CAK	106.8	109.5
CAB	CAS	HAS	111.0	109.5
CAS	CAB	HAB1	111.9	109.5
CAS	CAB	HAB2	110.4	109.5
CAS	CAB	HAB3	111.9	109.5
CAK	CAS	HAS	110.9	109.5
CAS	CAK	CAI	122.1	120.0
CAS	CAK	HAK	123.9	120.0
HAB1	CAB	HAB2	111.9	109.4
HAB1	CAB	HAB3	98.5	109.5
HAB2	CAB	HAB3	111.9	109.5
CAI	CAK	HAK	114.0	120.0
CAK	CAI	CAJ	117.4	120.0
CAK	CAI	HAI	121.0	120.0
CAJ	CAI	HAI	121.6	120.0
CAI	CAJ	CAP	123.5	120.0
CAI	CAJ	HAJ	118.3	120.0
CAP	CAJ	HAJ	118.2	120.0
CAJ	CAP	CAA	118.6	120.0
CAJ	CAP	CAT	120.0	120.0
CAA	CAP	CAT	121.4	120.0
CAP	CAA	HAA1	108.9	109.5
CAP	CAA	HAA2	118.6	109.5
CAP	CAA	HAA3	108.9	109.5
CAP	CAT	CAL	110.3	110.4
CAP	CAT	CB	113.5	110.3
CAP	CAT	HAT	104.4	110.2
HAA1	CAA	HAA2	108.9	109.4
HAA1	CAA	HAA3	101.2	109.5
HAA2	CAA	HAA3	108.9	109.5
CAL	CAT	CB	103.5	105.2
CAL	CAT	HAT	114.3	110.4
CAT	CAL	N	105.6	104.6
CAT	CAL	HAL1	113.7	110.4
CAT	CAL	HAL2	113.6	110.4
CB	CAT	HAT	111.2	110.3
CAT	CB	CA	100.0	104.9
CAT	CB	CG	114.9	110.4
CAT	CB	HB	112.5	110.4
N	CAL	HAL1	113.6	110.5
N	CAL	HAL2	113.7	110.4
CAL	N	CA	107.8	104.2
CAL	N	HN	112.8	106.7
HAL1	CAL	HAL2	96.8	110.4
CA	N	HN	112.8	106.7
N	CA	C	111.7	110.4
N	CA	CB	104.3	104.6
N	CA	HA	111.9	110.4
C	CA	CB	110.8	110.4
C	CA	HA	105.5	110.3
CA	C	OXT	121.1	120.0
CA	C	O	119.7	120.0
CB	CA	HA	112.8	110.4
CA	CB	CG	110.0	110.3
CA	CB	HB	117.1	110.3
OXT	C	O	119.2	120.0
C	O	HO	119.6	120.0
CG	CB	HB	102.9	110.3
CB	CG	CD	115.9	109.4
CB	CG	HG1	109.9	109.5
CB	CG	HG2	109.9	109.5
CD	CG	HG1	109.9	109.5
CD	CG	HG2	109.9	109.5
CG	CD	OE2	122.4	120.0
CG	CD	OE1	119.0	120.0
HG1	CG	HG2	100.3	109.5
OE2	CD	OE1	118.6	120.0
CD	OE2	HE2	122.4	120.0

Torsion Angles for DOQ

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
OAG	CAQ	OAD	CAS	180.9	180.1
OAD	CAQ	OAG	HAG	180.0	359.9
OAD	CAQ	CAS	CAB	246.8	120.0
OAD	CAQ	CAS	CAK	128.9	0.0
OAD	CAQ	CAS	HAS	7.9	240.0
OAD	CAQ	OAG	CAS	179.1	179.9
OAG	CAQ	CAS	CAB	65.9	300.0
OAG	CAQ	CAS	CAK	308.0	180.0
OAG	CAQ	CAS	HAS	187.0	59.9
OAD	CAQ	CAS	OAG	180.9	180.1
CAS	CAQ	OAG	HAG	0.8	180.0
CAB	CAS	CAQ	CAK	117.9	120.0
CAB	CAS	CAQ	HAS	238.9	240.0
CAQ	CAS	CAB	HAB1	54.7	300.0
CAQ	CAS	CAB	HAB2	180.0	60.0
CAQ	CAS	CAB	HAB3	305.3	180.0
CAK	CAS	CAQ	HAS	121.0	120.0
CAQ	CAS	CAK	CAI	266.9	239.9
CAQ	CAS	CAK	HAK	86.9	60.0
HAG	OAG	CAQ	CAS	0.8	180.0
CAQ	CAS	CAB	CAK	239.9	240.0
CAQ	CAS	CAB	HAS	118.9	120.0
CAK	CAS	CAB	HAS	239.0	239.9
CAB	CAS	CAK	CAI	146.8	120.0
CAB	CAS	CAK	HAK	326.8	300.1
HAB1	CAB	CAS	HAB2	234.7	240.0
HAB1	CAB	CAS	HAB3	109.5	120.0
HAB2	CAB	CAS	HAB3	234.7	240.0
CAQ	CAS	CAK	CAB	120.1	120.0
CAQ	CAS	CAK	HAS	241.1	240.0
CAB	CAS	CAK	HAS	121.1	120.0
CAK	CAS	CAB	HAB1	174.9	60.0
CAK	CAS	CAB	HAB2	300.1	179.9
CAK	CAS	CAB	HAB3	65.4	300.0
CAI	CAK	CAS	HAK	180.0	179.9
CAS	CAK	CAI	CAJ	180.4	180.1
CAS	CAK	CAI	HAI	0.3	0.0
CAQ	CAS	HAS	CAB	239.3	240.1
CAQ	CAS	HAS	CAK	120.8	120.0
CAB	CAS	HAS	CAK	241.5	239.9
HAS	CAS	CAB	HAB1	295.8	180.0
HAS	CAS	CAB	HAB2	61.1	300.0
HAS	CAS	CAB	HAB3	186.4	60.0
HAS	CAS	CAK	CAI	25.8	359.9
HAS	CAS	CAK	HAK	205.8	180.0
HAB1	CAB	CAS	CAK	174.9	60.0
HAB1	CAB	CAS	HAS	295.8	180.0
CAS	CAB	HAB1	HAB2	124.5	120.0
CAS	CAB	HAB1	HAB3	242.2	240.0
HAB2	CAB	HAB1	HAB3	117.8	120.0
HAB2	CAB	CAS	CAK	300.1	179.9
HAB2	CAB	CAS	HAS	61.1	300.0
CAS	CAB	HAB2	HAB1	234.7	240.0
CAS	CAB	HAB2	HAB3	125.3	120.0
HAB1	CAB	HAB2	HAB3	250.6	240.0
HAB3	CAB	CAS	CAK	65.4	300.0
HAB3	CAB	CAS	HAS	186.4	60.0
CAS	CAB	HAB3	HAB1	117.8	120.0
CAS	CAB	HAB3	HAB2	235.6	240.0
HAB1	CAB	HAB3	HAB2	117.8	120.0
CAI	CAK	CAS	HAS	25.8	359.9
CAS	CAK	CAI	HAK	180.0	180.1
CAJ	CAI	CAK	HAI	180.0	180.0
CAK	CAI	CAJ	CAP	180.1	174.9
CAK	CAI	CAJ	HAJ	0.0	354.8
HAK	CAK	CAS	HAS	205.8	180.0
CAS	CAK	HAK	CAI	180.0	179.9
HAK	CAK	CAI	CAJ	0.4	360.0
HAK	CAK	CAI	HAI	180.3	179.9
CAJ	CAI	CAK	HAK	0.4	360.0
CAK	CAI	CAJ	HAI	180.0	180.0
CAP	CAJ	CAI	HAJ	180.0	180.1
CAI	CAJ	CAP	CAA	179.6	174.2
CAI	CAJ	CAP	CAT	0.5	354.2
HAI	CAI	CAK	HAK	180.3	179.9
CAK	CAI	HAI	CAJ	180.0	180.0
HAI	CAI	CAJ	CAP	0.1	355.0
HAI	CAI	CAJ	HAJ	180.1	174.9
CAP	CAJ	CAI	HAI	0.1	355.0
CAI	CAJ	CAP	HAJ	180.0	179.9
CAA	CAP	CAJ	CAT	179.2	180.0
CAJ	CAP	CAA	HAA1	54.7	5.6
CAJ	CAP	CAA	HAA2	180.0	125.6
CAJ	CAP	CAA	HAA3	305.2	245.6
CAJ	CAP	CAT	CAL	158.9	142.7
CAJ	CAP	CAT	CB	274.5	258.4
CAJ	CAP	CAT	HAT	35.7	20.5
HAJ	CAJ	CAI	HAI	180.1	174.9
CAI	CAJ	HAJ	CAP	180.0	180.1
HAJ	CAJ	CAP	CAA	359.6	354.3
HAJ	CAJ	CAP	CAT	180.5	174.3
CAA	CAP	CAJ	HAJ	359.6	354.3
CAJ	CAP	CAA	CAT	180.9	180.0
CAA	CAP	CAT	CAL	339.8	322.7
CAA	CAP	CAT	CB	95.3	78.4
CAA	CAP	CAT	HAT	216.6	200.5
HAA1	CAA	CAP	HAA2	234.7	240.0
HAA1	CAA	CAP	HAA3	109.5	120.0
HAA2	CAA	CAP	HAA3	234.8	240.0
CAT	CAP	CAJ	HAJ	180.5	174.3
CAJ	CAP	CAT	CAA	179.1	180.0
CAT	CAP	CAA	HAA1	233.9	185.6
CAT	CAP	CAA	HAA2	359.1	305.6
CAT	CAP	CAA	HAA3	124.4	65.6
CAL	CAT	CAP	CB	244.5	244.2
CAL	CAT	CAP	HAT	123.3	122.1
CAP	CAT	CAL	N	147.1	142.7
CAP	CAT	CAL	HAL1	21.9	261.6
CAP	CAT	CAL	HAL2	272.4	24.0
CB	CAT	CAP	HAT	238.8	237.9
CAP	CAT	CB	CA	199.9	241.1
CAP	CAT	CB	CG	317.6	360.0
CAP	CAT	CB	HB	74.9	122.2
HAA1	CAA	CAP	CAT	233.9	185.6
CAP	CAA	HAA1	HAA2	130.7	120.0
CAP	CAA	HAA1	HAA3	245.4	240.0
HAA2	CAA	HAA1	HAA3	114.6	120.0
HAA2	CAA	CAP	CAT	359.1	305.6
CAP	CAA	HAA2	HAA1	234.7	240.0
CAP	CAA	HAA2	HAA3	125.2	120.0
HAA1	CAA	HAA2	HAA3	250.5	240.0
HAA3	CAA	CAP	CAT	124.4	65.6
CAP	CAA	HAA3	HAA1	114.6	120.0
CAP	CAA	HAA3	HAA2	229.3	240.0
HAA1	CAA	HAA3	HAA2	114.6	120.0
CAP	CAT	CAL	CB	121.7	119.0
CAP	CAT	CAL	HAT	242.7	237.9
CB	CAT	CAL	HAT	121.0	119.0
CAL	CAT	CB	CA	319.4	0.1
CAL	CAT	CB	CG	77.1	119.0
CAL	CAT	CB	HB	194.4	241.2
N	CAL	CAT	HAL1	125.2	241.1
N	CAL	CAT	HAL2	234.7	118.8
CAT	CAL	N	CA	0.6	320.5
CAT	CAL	N	HN	235.3	207.8
HAL1	CAL	CAT	HAL2	109.5	237.6
CAP	CAT	CB	CAL	240.5	241.0
CAP	CAT	CB	HAT	117.4	122.0
CAL	CAT	CB	HAT	236.9	241.0
CB	CAT	CAL	N	25.4	23.8
CB	CAT	CAL	HAL1	260.2	142.6
CB	CAT	CAL	HAL2	150.7	265.0
N	CA	CB	CAT	41.3	336.1
C	CA	CB	CAT	281.0	217.2
CAT	CB	CA	HA	163.0	94.9
CA	CB	CAT	CG	242.3	241.1
CA	CB	CAT	HB	125.1	118.9
CG	CB	CAT	HB	242.8	237.8
CAT	CB	CG	CD	157.5	177.1
CAT	CB	CG	HG1	32.2	297.2
CAT	CB	CG	HG2	282.8	57.2
CAP	CAT	HAT	CAL	120.6	122.2
CAP	CAT	HAT	CB	237.2	237.9
CAL	CAT	HAT	CB	116.7	115.8
HAT	CAT	CAL	N	264.4	264.8
HAT	CAT	CAL	HAL1	139.2	23.7
HAT	CAT	CAL	HAL2	29.7	146.0
HAT	CAT	CB	CA	82.5	119.1
HAT	CAT	CB	CG	200.2	237.9
HAT	CAT	CB	HB	317.5	0.2
N	CAL	CAT	CB	25.4	23.8
N	CAL	CAT	HAT	264.4	264.8
CAT	CAL	N	HAL1	234.7	118.8
CAT	CAL	N	HAL2	125.3	241.2
HAL1	CAL	N	HAL2	250.5	122.4
CA	N	CAL	HN	125.3	112.7
CAL	N	CA	C	93.0	158.4
CAL	N	CA	CB	333.3	39.5
CAL	N	CA	HA	211.0	280.7
HAL1	CAL	CAT	CB	260.2	142.6
HAL1	CAL	CAT	HAT	139.2	23.7
CAT	CAL	HAL1	N	120.8	244.8
CAT	CAL	HAL1	HAL2	240.4	122.4
N	CAL	HAL1	HAL2	119.6	237.6
HAL1	CAL	N	CA	125.8	201.7
HAL1	CAL	N	HN	0.5	89.0
HAL2	CAL	CAT	CB	150.7	265.0
HAL2	CAL	CAT	HAT	29.7	146.0
CAT	CAL	HAL2	N	239.1	115.2
CAT	CAL	HAL2	HAL1	119.6	237.6
N	CAL	HAL2	HAL1	240.4	122.4
HAL2	CAL	N	CA	235.3	79.3
HAL2	CAL	N	HN	110.0	326.6
CAT	CB	CA	N	41.3	336.1
CA	N	CAL	HAL1	125.8	201.7
CA	N	CAL	HAL2	235.3	79.3
CAL	N	CA	HN	234.7	247.3
C	CA	N	CB	119.7	118.8
C	CA	N	HA	242.0	237.7
N	CA	C	OXT	23.5	325.1
N	CA	C	O	202.7	145.1
CB	CA	N	HA	122.3	118.8
N	CA	CB	CG	280.0	217.1
N	CA	CB	HB	163.1	95.0
HN	N	CAL	HAL1	0.5	89.0
HN	N	CAL	HAL2	110.0	326.6
CAL	N	HN	CA	122.5	111.0
HN	N	CA	C	218.2	271.1
HN	N	CA	CB	98.5	152.2
HN	N	CA	HA	336.3	33.4
CAT	CB	CA	C	281.0	217.2
C	CA	N	HN	218.2	271.1
N	CA	C	CB	244.2	244.8
N	CA	C	HA	121.8	122.4
CB	CA	C	HA	237.6	237.6
C	CA	CB	CG	159.7	98.3
C	CA	CB	HB	42.7	336.2
OXT	C	CA	O	180.8	180.0
CA	C	O	HO	180.0	180.0
CA	CB	CAT	HAT	82.5	119.1
CAT	CB	CA	CG	121.2	118.9
CAT	CB	CA	HB	238.2	241.1
CB	CA	N	HN	98.5	152.2
N	CA	CB	C	120.3	118.8
N	CA	CB	HA	238.3	241.2
C	CA	CB	HA	118.0	122.3
CB	CA	C	OXT	139.3	80.3
CB	CA	C	O	318.5	260.3
CG	CB	CA	HB	117.0	122.1
CA	CB	CG	CD	269.4	292.7
CA	CB	CG	HG1	144.1	52.7
CA	CB	CG	HG2	34.7	172.7
HA	CA	N	HN	336.3	33.4
N	CA	HA	C	238.3	237.6
N	CA	HA	CB	117.2	115.2
C	CA	HA	CB	238.9	237.6
HA	CA	C	OXT	261.7	202.7
HA	CA	C	O	80.8	22.7
HA	CA	CB	CG	41.7	336.0
HA	CA	CB	HB	284.7	213.8
OXT	C	CA	CB	139.3	80.3
OXT	C	CA	HA	261.7	202.7
CA	C	OXT	O	179.2	180.0
OXT	C	O	HO	359.1	360.0
O	C	CA	CB	318.5	260.3
O	C	CA	HA	80.8	22.7
CA	C	O	OXT	180.8	180.0
CG	CB	CAT	HAT	200.2	237.9
CAT	CB	CG	CA	248.1	244.5
CAT	CB	CG	HB	122.6	122.3
CG	CB	CA	HA	41.7	336.0
CA	CB	CG	HB	234.4	237.8
CD	CG	CB	HG1	125.3	240.0
CD	CG	CB	HG2	234.7	120.0
CB	CG	CD	OE2	344.9	170.4
CB	CG	CD	OE1	166.2	350.3
HG1	CG	CB	HG2	109.4	240.0
HB	CB	CAT	HAT	317.5	0.2
CAT	CB	HB	CA	115.1	115.5
CAT	CB	HB	CG	235.8	237.7
HB	CB	CA	HA	284.7	213.8
CA	CB	HB	CG	120.8	122.2
HB	CB	CG	CD	35.0	54.8
HB	CB	CG	HG1	269.7	174.8
HB	CB	CG	HG2	160.2	294.8
CD	CG	CB	HB	35.0	54.8
CB	CG	CD	HG1	234.7	120.0
CB	CG	CD	HG2	125.3	240.0
HG1	CG	CD	HG2	250.5	120.0
OE2	CD	CG	OE1	178.7	180.0
CG	CD	OE2	HE2	180.0	180.0
HG1	CG	CB	HB	269.7	174.8
CB	CG	HG1	CD	128.7	240.0
CB	CG	HG1	HG2	244.4	120.0
CD	CG	HG1	HG2	115.7	240.0
HG1	CG	CD	OE2	110.2	50.4
HG1	CG	CD	OE1	291.5	230.4
HG2	CG	CB	HB	160.2	294.8
CB	CG	HG2	CD	231.3	120.0
CB	CG	HG2	HG1	115.7	240.0
CD	CG	HG2	HG1	244.3	120.0
HG2	CG	CD	OE2	219.6	290.4
HG2	CG	CD	OE1	41.0	110.3
OE2	CD	CG	HG1	110.2	50.4
OE2	CD	CG	HG2	219.6	290.4
CG	CD	OE2	OE1	181.3	180.0
OE1	CD	CG	HG1	291.5	230.4
OE1	CD	CG	HG2	41.0	110.3
CG	CD	OE1	OE2	178.7	180.0
OE1	CD	OE2	HE2	358.7	0.1
HE2	OE2	CD	OE1	358.7	0.1