PDB Chemical Component DOC

Ideal Model

Chemical Description

Name 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE
Formula C9 H14 N3 O6 P
Formal charge 0
Molecular weight 291.198 g/mol
Component type DNA LINKING
Nonstandard Parent Id DC

Chemical features

Atom count 33
Chiral atom count 2
Chiral atoms C1' C4'
Observed leaving atoms OP3
Bond count 34
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) [(2S,5R)-5-(4-amino-2-oxopyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl dihydrogen phosphate
Systematic name (OpenEye OEToolkits) [(2S,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)N(C=C1)[C@H]2CC[C@@H](CO[P](O)(O)=O)O2
SMILES (CACTVS) NC1=NC(=O)N(C=C1)[CH]2CC[CH](CO[P](O)(O)=O)O2
Stereo SMILES (OpenEye) C1C[C@@H](O[C@@H]1COP(=O)(O)O)N2C=CC(=NC2=O)N
InChI descriptor InChI=1S/C9H14N3O6P/c10-7-3-4-12(9(13)11-7)8-2-1-6(18-8)5-17-19(14,15)16/h3-4,6,8H,1-2,5H2,(H2,10,11,13)(H2,14,15,16)/t6-,8+/m0/s1
InChIKey descriptor RAJMXAZJKUGYGW-POYBYMJQSA-N

Status Information

Last modified 2011-06-04
Created 1999-07-08
Release status REL
Processing site RCSB