PDB Chemical Component DOB

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DOB

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1'	O1'	1.222	1.214
C1'	O2'	1.223	1.348
C1'	C1	1.407	1.472
O2'	HO2'	0.951	0.967
C1	C2	1.378	1.403
C1	C6	1.400	1.398
C2	C3	1.403	1.385
C2	O2	1.352	1.356
C3	C4	1.379	1.386
C3	H3	1.102	1.080
C4	C5	1.388	1.392
C4	O4	1.340	1.357
C5	C6	1.415	1.366
C5	H5	1.104	1.080
C6	H6	1.103	1.080
O2	HO2	0.950	0.966
O4	HO4	0.951	0.966

Bond Angles for DOB

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1'	C1'	O2'	115.2	120.0
O1'	C1'	C1	122.6	120.0
O2'	C1'	C1	122.0	120.0
C1'	O2'	HO2'	115.2	120.0
C1'	C1	C2	122.4	120.1
C1'	C1	C6	120.4	120.1
C2	C1	C6	116.4	119.8
C1	C2	C3	123.6	119.6
C1	C2	O2	120.9	120.3
C1	C6	C5	122.1	120.1
C1	C6	H6	118.4	120.0
C3	C2	O2	115.3	120.2
C2	C3	C4	118.1	119.9
C2	C3	H3	121.8	120.0
C2	O2	HO2	120.9	106.8
C4	C3	H3	120.1	120.1
C3	C4	C5	121.4	120.3
C3	C4	O4	120.6	119.9
C5	C4	O4	117.5	119.8
C4	C5	C6	118.3	120.3
C4	C5	H5	119.9	119.8
C4	O4	HO4	120.6	106.8
C6	C5	H5	121.8	119.8
C5	C6	H6	119.4	119.9

Torsion Angles for DOB

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O2'	C1'	O1'	C1	174.8	180.1
O1'	C1'	O2'	HO2'	180.0	359.9
O1'	C1'	C1	C2	359.4	359.8
O1'	C1'	C1	C6	168.6	180.0
O1'	C1'	O2'	C1	185.2	179.9
O2'	C1'	C1	C2	185.0	179.7
O2'	C1'	C1	C6	354.2	359.9
O1'	C1'	C1	O2'	174.5	180.1
C1	C1'	O2'	HO2'	354.8	180.0
C2	C1	C1'	C6	190.8	179.8
C1'	C1	C2	C3	169.6	179.6
C1'	C1	C2	O2	353.2	0.2
C1'	C1	C6	C5	190.4	180.0
C1'	C1	C6	H6	10.4	0.1
HO2'	O2'	C1'	C1	354.8	180.0
C1'	C1	C2	C6	169.6	180.2
C2	C1	C6	C5	0.2	0.2
C2	C1	C6	H6	180.2	180.3
C3	C2	C1	O2	176.4	179.4
C1	C2	C3	C4	0.0	0.6
C1	C2	C3	H3	180.0	180.2
C1	C2	O2	HO2	180.0	269.5
C1'	C1	C6	C2	190.2	179.8
C6	C1	C2	C3	360.0	359.5
C6	C1	C2	O2	183.6	180.1
C4	C5	C6	C1	359.6	0.1
C1	C6	C5	H5	179.6	179.9
C5	C6	C1	H6	180.0	179.9
C3	C2	C1	C6	360.0	359.5
C1	C2	C3	O2	183.4	180.6
C3	C2	O2	HO2	3.3	90.1
C4	C3	C2	H3	180.0	180.4
C2	C3	C4	C5	359.8	359.7
C2	C3	C4	O4	171.9	179.7
O2	C2	C1	C6	183.6	180.1
C1	C2	O2	C3	176.7	179.4
O2	C2	C3	C4	176.6	180.0
O2	C2	C3	H3	356.6	359.6
C4	C3	C2	O2	176.6	180.0
C2	C3	C4	H3	180.0	179.6
C5	C4	C3	O4	187.9	180.0
C3	C4	C5	C6	0.4	360.0
C3	C4	C5	H5	180.4	180.1
C3	C4	O4	HO4	180.0	270.1
H3	C3	C2	O2	356.6	359.6
C2	C3	H3	C4	180.0	180.4
H3	C3	C4	C5	179.8	180.1
H3	C3	C4	O4	351.9	0.0
C1	C6	C5	C4	359.6	0.1
C5	C4	C3	H3	179.8	180.1
C3	C4	C5	O4	172.4	180.0
C5	C4	O4	HO4	352.4	90.0
C6	C5	C4	H5	180.0	179.8
C4	C5	C6	H6	179.6	180.0
O4	C4	C3	H3	351.9	0.0
C3	C4	O4	C5	187.6	180.0
O4	C4	C5	C6	188.1	180.0
O4	C4	C5	H5	8.1	0.1
C1	C6	C5	H6	180.0	180.1
C6	C5	C4	O4	188.1	180.0
C4	C5	C6	H5	180.0	180.2
H5	C5	C4	O4	8.1	0.1
C4	C5	H5	C6	180.0	179.8
H5	C5	C6	H6	359.6	359.9
C1	C6	H6	C5	180.0	179.9
H6	C6	C5	H5	359.6	359.9