PDB Chemical Component DNW
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DNW
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O5 |
N5 |
1.229 |
1.218 |
| O52 |
N5 |
1.222 |
1.218 |
| N5 |
C5 |
1.399 |
1.480 |
| C5 |
C6 |
1.390 |
1.382 |
| C5 |
C4 |
1.386 |
1.383 |
| C6 |
C7 |
1.392 |
1.382 |
| C4 |
C3 |
1.386 |
1.381 |
| C7 |
C2 |
1.391 |
1.389 |
| C3 |
C2 |
1.394 |
1.390 |
| C3 |
N3 |
1.398 |
1.480 |
| C2 |
N13 |
1.355 |
1.397 |
| O3 |
N3 |
1.224 |
1.219 |
| N3 |
O32 |
1.220 |
1.218 |
| N13 |
CB |
1.461 |
1.465 |
| CA |
C |
1.503 |
1.507 |
| CA |
CB |
1.530 |
1.530 |
| CA |
N |
1.492 |
1.469 |
| C |
O |
1.253 |
1.208 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| CA |
HA |
1.100 |
1.091 |
| CB |
H5 |
1.100 |
1.090 |
| CB |
H6 |
1.100 |
1.090 |
| N13 |
H7 |
1.000 |
0.970 |
| C4 |
H8 |
1.080 |
1.080 |
| C6 |
H9 |
1.080 |
1.080 |
| C7 |
H10 |
1.080 |
1.079 |
| C |
OXT |
|
1.342 |
| OXT |
HXT |
|
0.967 |
Bond Angles for DNW
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N5 |
C5 |
C6 |
121.6 |
119.9 |
| C5 |
C6 |
C7 |
120.1 |
120.1 |
| C5 |
C6 |
H9 |
120.0 |
120.0 |
| C5 |
C4 |
H8 |
120.2 |
120.0 |
| C7 |
C6 |
H9 |
119.9 |
119.9 |
| C6 |
C7 |
H10 |
120.1 |
120.1 |
| C3 |
N3 |
O32 |
120.4 |
120.0 |
| C2 |
N13 |
H7 |
106.0 |
120.0 |
| N13 |
CB |
H5 |
109.4 |
109.5 |
| N13 |
CB |
H6 |
109.4 |
109.5 |
| CB |
CA |
C |
110.1 |
109.5 |
| CA |
C |
O |
120.0 |
120.0 |
| C |
CA |
HA |
108.4 |
109.5 |
| CA |
C |
OXT |
|
120.0 |
| CB |
CA |
HA |
108.0 |
109.5 |
| CA |
CB |
H5 |
109.4 |
109.5 |
| CA |
CB |
H6 |
109.4 |
109.4 |
| CA |
N |
H |
109.5 |
110.9 |
| CA |
N |
H2 |
109.5 |
111.0 |
| O |
C |
OXT |
|
120.0 |
| H |
N |
H2 |
109.5 |
111.0 |
| H5 |
CB |
H6 |
109.5 |
109.5 |
| C |
OXT |
HXT |
|
117.0 |
Torsion Angles for DNW
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O5 |
N5 |
C5 |
C6 |
340.8 |
360.0 |
| O52 |
N5 |
C5 |
C6 |
162.0 |
180.0 |
| N5 |
C5 |
C6 |
C7 |
179.2 |
179.9 |
| N5 |
C5 |
C6 |
H9 |
359.2 |
0.3 |
| N5 |
C5 |
C4 |
H8 |
0.5 |
359.8 |
| C6 |
C5 |
C4 |
H8 |
179.1 |
180.0 |
| C7 |
C6 |
C5 |
H9 |
180.0 |
179.6 |
| C5 |
C6 |
C7 |
H10 |
180.1 |
180.1 |
| C5 |
C6 |
C7 |
H9 |
180.0 |
180.4 |
| C7 |
C2 |
N13 |
H7 |
120.3 |
174.2 |
| C3 |
C2 |
N13 |
H7 |
301.6 |
354.4 |
| C2 |
N13 |
CB |
H5 |
17.5 |
60.0 |
| C2 |
N13 |
CB |
H6 |
137.5 |
300.0 |
| N13 |
CB |
CA |
C |
173.2 |
185.0 |
| N13 |
CB |
CA |
HA |
55.0 |
65.0 |
| CA |
CB |
N13 |
H5 |
240.0 |
120.0 |
| CA |
CB |
N13 |
H6 |
120.1 |
240.0 |
| H5 |
CB |
N13 |
H6 |
240.1 |
120.0 |
| CB |
CA |
C |
HA |
242.0 |
240.0 |
| C |
CA |
CB |
H5 |
53.2 |
305.0 |
| C |
CA |
CB |
H6 |
293.2 |
65.0 |
| C |
CA |
N |
H |
180.0 |
296.0 |
| C |
CA |
N |
H2 |
300.0 |
59.9 |
| O |
C |
CA |
OXT |
|
180.0 |
| CA |
C |
OXT |
HXT |
|
180.0 |
| N13 |
CB |
CA |
H5 |
120.0 |
239.9 |
| N13 |
CB |
CA |
H6 |
240.0 |
120.0 |
| CB |
CA |
C |
O |
82.3 |
100.0 |
| C |
CA |
CB |
HA |
118.2 |
120.0 |
| CB |
CA |
C |
OXT |
|
280.0 |
| CB |
CA |
N |
H |
57.5 |
176.0 |
| CB |
CA |
N |
H2 |
177.5 |
300.0 |
| H5 |
CB |
CA |
H6 |
119.9 |
240.0 |
| H |
N |
CA |
H2 |
240.0 |
236.1 |
| O |
C |
CA |
HA |
200.2 |
220.0 |
| CA |
C |
O |
OXT |
|
180.0 |
| O |
C |
OXT |
HXT |
|
0.0 |
| CA |
N |
H |
H2 |
120.0 |
123.9 |
| CA |
N |
H2 |
H |
240.0 |
236.1 |
| CB |
CA |
HA |
C |
119.3 |
120.0 |
| HA |
CA |
C |
O |
200.2 |
220.0 |
| HA |
CA |
C |
OXT |
|
40.0 |
| HA |
CA |
CB |
H5 |
294.9 |
185.0 |
| HA |
CA |
CB |
H6 |
175.0 |
305.0 |
| HA |
CA |
N |
H |
300.9 |
56.1 |
| HA |
CA |
N |
H2 |
60.8 |
180.0 |
| N13 |
CB |
H5 |
H6 |
119.9 |
240.0 |
| H5 |
CB |
CA |
C |
53.2 |
305.0 |
| H5 |
CB |
CA |
HA |
294.9 |
185.0 |
| CA |
CB |
H5 |
H6 |
240.1 |
120.0 |
| N13 |
CB |
H6 |
H5 |
240.1 |
120.1 |
| H6 |
CB |
CA |
C |
293.2 |
65.0 |
| H6 |
CB |
CA |
HA |
175.0 |
305.0 |
| CA |
CB |
H6 |
H5 |
119.9 |
240.0 |
| H7 |
N13 |
CB |
H5 |
255.7 |
240.0 |
| H7 |
N13 |
CB |
H6 |
15.6 |
120.0 |
| C5 |
C6 |
H9 |
C7 |
180.0 |
179.6 |
| H9 |
C6 |
C7 |
H10 |
0.0 |
359.7 |
| H10 |
C7 |
C6 |
H9 |
0.0 |
359.7 |
| CA |
C |
OXT |
O |
|
180.0 |
| OXT |
C |
CA |
HA |
|
40.0 |