PDB Chemical Component DNR

Ideal Model

Chemical Description

Name 2'-DEOXY-N3-PROTONATED CYTIDINE-5'-MONOPHOSPHATE
Formula C9 H15 N3 O7 P
Formal charge 1
Molecular weight 308.205 g/mol
Component type DNA LINKING
Nonstandard Parent Id DC

Chemical features

Atom count 35
Chiral atom count 3
Chiral atoms C4' C1' C3'
Observed leaving atoms OP3 HO3'
Bond count 36
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-5'-cytidylic acid
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-(4-amino-2-oxo-pyrimidin-3-ium-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=[NH+]C(=O)N(C=C1)[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2
SMILES (CACTVS) NC1=[NH+]C(=O)N(C=C1)[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1N2C=CC(=[NH+]C2=O)N)COP(=O)(O)O)O
InChI descriptor InChI=1S/C9H14N3O7P/c10-7-1-2-12(9(14)11-7)8-3-5(13)6(19-8)4-18-20(15,16)17/h1-2,5-6,8,13H,3-4H2,(H2,10,11,14)(H2,15,16,17)/p+1/t5-,6+,8+/m0/s1
InChIKey descriptor NCMVOABPESMRCP-SHYZEUOFSA-O

Status Information

Last modified 2011-06-04
Created 2002-04-04
Release status REL
Model PDB code 1LAQ
Processing site RCSB