PDB Chemical Component DNL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DNL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CA |
C |
1.530 |
1.507 |
| CA |
CB |
1.541 |
1.531 |
| CA |
HA2 |
1.099 |
1.090 |
| CA |
HA |
1.100 |
1.090 |
| C |
O |
1.235 |
1.207 |
| C |
H |
1.080 |
1.081 |
| CB |
CG |
1.539 |
1.530 |
| CB |
HB1 |
1.100 |
1.090 |
| CB |
HB2 |
1.099 |
1.090 |
| CG |
CD |
1.525 |
1.530 |
| CG |
HG1 |
1.100 |
1.090 |
| CG |
HG2 |
1.100 |
1.089 |
| CD |
CE |
1.524 |
1.530 |
| CD |
HD1 |
1.100 |
1.090 |
| CD |
HD2 |
1.100 |
1.090 |
| CE |
NZ |
1.495 |
1.469 |
| CE |
HE1 |
1.100 |
1.091 |
| CE |
HE2 |
1.100 |
1.090 |
| NZ |
HZ1 |
1.000 |
1.010 |
| NZ |
HZ2 |
1.000 |
1.009 |
Bond Angles for DNL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C |
CA |
CB |
110.9 |
109.5 |
| C |
CA |
HA2 |
109.0 |
109.5 |
| C |
CA |
HA |
108.7 |
109.5 |
| CA |
C |
O |
120.8 |
120.0 |
| CA |
C |
H |
119.6 |
120.0 |
| CB |
CA |
HA2 |
109.0 |
109.5 |
| CB |
CA |
HA |
108.7 |
109.5 |
| CA |
CB |
CG |
116.7 |
109.5 |
| CA |
CB |
HB1 |
107.1 |
109.4 |
| CA |
CB |
HB2 |
105.5 |
109.4 |
| HA2 |
CA |
HA |
110.6 |
109.4 |
| O |
C |
H |
119.6 |
120.0 |
| CG |
CB |
HB1 |
107.1 |
109.5 |
| CG |
CB |
HB2 |
105.5 |
109.5 |
| CB |
CG |
CD |
112.7 |
109.4 |
| CB |
CG |
HG1 |
108.4 |
109.4 |
| CB |
CG |
HG2 |
107.7 |
109.5 |
| HB1 |
CB |
HB2 |
115.3 |
109.5 |
| CD |
CG |
HG1 |
108.4 |
109.5 |
| CD |
CG |
HG2 |
107.6 |
109.5 |
| CG |
CD |
CE |
111.4 |
109.5 |
| CG |
CD |
HD1 |
108.8 |
109.5 |
| CG |
CD |
HD2 |
108.4 |
109.5 |
| HG1 |
CG |
HG2 |
112.0 |
109.5 |
| CE |
CD |
HD1 |
108.8 |
109.5 |
| CE |
CD |
HD2 |
108.4 |
109.5 |
| CD |
CE |
NZ |
112.7 |
109.5 |
| CD |
CE |
HE1 |
108.4 |
109.5 |
| CD |
CE |
HE2 |
107.7 |
109.5 |
| HD1 |
CD |
HD2 |
111.0 |
109.4 |
| NZ |
CE |
HE1 |
108.4 |
109.5 |
| NZ |
CE |
HE2 |
107.7 |
109.5 |
| CE |
NZ |
HZ1 |
109.5 |
106.7 |
| CE |
NZ |
HZ2 |
109.4 |
106.7 |
| HE1 |
CE |
HE2 |
112.0 |
109.5 |
| HZ1 |
NZ |
HZ2 |
109.5 |
106.7 |
Torsion Angles for DNL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CB |
CA |
C |
HA2 |
240.0 |
240.0 |
| CB |
CA |
C |
HA |
119.4 |
120.0 |
| C |
CA |
CB |
CG |
89.9 |
180.0 |
| C |
CA |
CB |
HB1 |
209.9 |
60.0 |
| C |
CA |
CB |
HB2 |
333.3 |
300.0 |
| HA2 |
CA |
C |
HA |
239.4 |
240.0 |
| O |
C |
CA |
H |
180.0 |
179.9 |
| C |
CA |
CB |
HA2 |
120.0 |
120.0 |
| C |
CA |
CB |
HA |
240.6 |
239.9 |
| CB |
CA |
C |
O |
121.9 |
125.0 |
| CB |
CA |
C |
H |
301.9 |
305.0 |
| HA2 |
CA |
CB |
HA |
120.6 |
119.9 |
| CG |
CB |
CA |
HB1 |
240.0 |
120.0 |
| CG |
CB |
CA |
HB2 |
116.7 |
240.0 |
| CA |
CB |
CG |
CD |
286.9 |
180.0 |
| CA |
CB |
CG |
HG1 |
47.0 |
60.0 |
| CA |
CB |
CG |
HG2 |
168.3 |
300.0 |
| HB1 |
CB |
CA |
HB2 |
236.6 |
120.0 |
| C |
CA |
HA2 |
CB |
238.8 |
240.0 |
| C |
CA |
HA2 |
HA |
119.4 |
120.0 |
| HA2 |
CA |
C |
O |
241.9 |
245.0 |
| HA2 |
CA |
C |
H |
61.9 |
65.1 |
| CB |
CA |
HA2 |
HA |
240.6 |
240.0 |
| HA2 |
CA |
CB |
CG |
329.9 |
60.0 |
| HA2 |
CA |
CB |
HB1 |
89.9 |
300.0 |
| HA2 |
CA |
CB |
HB2 |
213.3 |
180.0 |
| C |
CA |
HA |
CB |
120.8 |
120.0 |
| C |
CA |
HA |
HA2 |
240.4 |
240.0 |
| HA |
CA |
C |
O |
2.5 |
4.9 |
| HA |
CA |
C |
H |
182.5 |
185.0 |
| CB |
CA |
HA |
HA2 |
119.6 |
120.0 |
| HA |
CA |
CB |
CG |
209.3 |
300.0 |
| HA |
CA |
CB |
HB1 |
329.3 |
180.1 |
| HA |
CA |
CB |
HB2 |
92.6 |
60.0 |
| O |
C |
CA |
CB |
121.9 |
125.0 |
| O |
C |
CA |
HA2 |
241.9 |
245.0 |
| O |
C |
CA |
HA |
2.5 |
4.9 |
| CA |
C |
O |
H |
180.0 |
180.1 |
| H |
C |
CA |
CB |
301.9 |
305.0 |
| H |
C |
CA |
HA2 |
61.9 |
65.1 |
| H |
C |
CA |
HA |
182.5 |
185.0 |
| CA |
C |
H |
O |
180.0 |
179.9 |
| CG |
CB |
CA |
HA2 |
329.9 |
60.0 |
| CG |
CB |
CA |
HA |
209.3 |
300.0 |
| CA |
CB |
CG |
HB1 |
120.0 |
240.1 |
| CA |
CB |
CG |
HB2 |
243.3 |
120.0 |
| HB1 |
CB |
CG |
HB2 |
123.3 |
239.9 |
| CD |
CG |
CB |
HG1 |
240.0 |
120.0 |
| CD |
CG |
CB |
HG2 |
118.6 |
240.0 |
| CB |
CG |
CD |
CE |
176.6 |
180.0 |
| CB |
CG |
CD |
HD1 |
296.6 |
60.0 |
| CB |
CG |
CD |
HD2 |
57.4 |
300.0 |
| HG1 |
CG |
CB |
HG2 |
238.6 |
120.0 |
| HB1 |
CB |
CA |
HA2 |
89.9 |
300.0 |
| HB1 |
CB |
CA |
HA |
329.3 |
180.1 |
| CA |
CB |
HB1 |
CG |
234.1 |
120.0 |
| CA |
CB |
HB1 |
HB2 |
117.0 |
240.1 |
| CG |
CB |
HB1 |
HB2 |
243.0 |
120.1 |
| HB1 |
CB |
CG |
CD |
167.0 |
299.9 |
| HB1 |
CB |
CG |
HG1 |
287.0 |
180.0 |
| HB1 |
CB |
CG |
HG2 |
48.4 |
59.9 |
| HB2 |
CB |
CA |
HA2 |
213.3 |
180.0 |
| HB2 |
CB |
CA |
HA |
92.6 |
60.0 |
| CA |
CB |
HB2 |
CG |
124.1 |
240.0 |
| CA |
CB |
HB2 |
HB1 |
242.0 |
119.9 |
| CG |
CB |
HB2 |
HB1 |
118.0 |
239.9 |
| HB2 |
CB |
CG |
CD |
43.6 |
60.0 |
| HB2 |
CB |
CG |
HG1 |
163.6 |
300.1 |
| HB2 |
CB |
CG |
HG2 |
285.0 |
180.0 |
| CD |
CG |
CB |
HB1 |
167.0 |
299.9 |
| CD |
CG |
CB |
HB2 |
43.6 |
60.0 |
| CB |
CG |
CD |
HG1 |
120.0 |
240.1 |
| CB |
CG |
CD |
HG2 |
241.4 |
120.0 |
| HG1 |
CG |
CD |
HG2 |
121.4 |
239.9 |
| CE |
CD |
CG |
HD1 |
240.0 |
120.0 |
| CE |
CD |
CG |
HD2 |
119.2 |
240.0 |
| CG |
CD |
CE |
NZ |
302.9 |
180.0 |
| CG |
CD |
CE |
HE1 |
62.9 |
60.0 |
| CG |
CD |
CE |
HE2 |
184.3 |
300.0 |
| HD1 |
CD |
CG |
HD2 |
239.2 |
120.0 |
| HG1 |
CG |
CB |
HB1 |
287.0 |
180.0 |
| HG1 |
CG |
CB |
HB2 |
163.6 |
300.1 |
| CB |
CG |
HG1 |
CD |
237.3 |
119.9 |
| CB |
CG |
HG1 |
HG2 |
118.7 |
240.0 |
| CD |
CG |
HG1 |
HG2 |
241.4 |
120.0 |
| HG1 |
CG |
CD |
CE |
56.6 |
299.9 |
| HG1 |
CG |
CD |
HD1 |
176.6 |
179.9 |
| HG1 |
CG |
CD |
HD2 |
297.4 |
60.0 |
| HG2 |
CG |
CB |
HB1 |
48.4 |
59.9 |
| HG2 |
CG |
CB |
HB2 |
285.0 |
180.0 |
| CB |
CG |
HG2 |
CD |
121.8 |
240.0 |
| CB |
CG |
HG2 |
HG1 |
240.9 |
120.0 |
| CD |
CG |
HG2 |
HG1 |
119.1 |
240.0 |
| HG2 |
CG |
CD |
CE |
295.2 |
60.0 |
| HG2 |
CG |
CD |
HD1 |
55.2 |
300.0 |
| HG2 |
CG |
CD |
HD2 |
176.0 |
180.0 |
| CE |
CD |
CG |
HG1 |
56.6 |
299.9 |
| CE |
CD |
CG |
HG2 |
295.2 |
60.0 |
| CG |
CD |
CE |
HD1 |
120.0 |
240.0 |
| CG |
CD |
CE |
HD2 |
240.8 |
120.0 |
| HD1 |
CD |
CE |
HD2 |
120.8 |
240.0 |
| NZ |
CE |
CD |
HE1 |
240.0 |
120.0 |
| NZ |
CE |
CD |
HE2 |
118.6 |
240.0 |
| CD |
CE |
NZ |
HZ1 |
207.2 |
180.0 |
| CD |
CE |
NZ |
HZ2 |
327.2 |
293.7 |
| HE1 |
CE |
CD |
HE2 |
238.6 |
120.0 |
| HD1 |
CD |
CG |
HG1 |
176.6 |
179.9 |
| HD1 |
CD |
CG |
HG2 |
55.2 |
300.0 |
| CG |
CD |
HD1 |
CE |
238.4 |
120.0 |
| CG |
CD |
HD1 |
HD2 |
119.2 |
240.0 |
| CE |
CD |
HD1 |
HD2 |
240.8 |
120.0 |
| HD1 |
CD |
CE |
NZ |
182.9 |
300.0 |
| HD1 |
CD |
CE |
HE1 |
302.9 |
180.0 |
| HD1 |
CD |
CE |
HE2 |
64.3 |
60.0 |
| HD2 |
CD |
CG |
HG1 |
297.4 |
60.0 |
| HD2 |
CD |
CG |
HG2 |
176.0 |
180.0 |
| CG |
CD |
HD2 |
CE |
121.1 |
240.0 |
| CG |
CD |
HD2 |
HD1 |
240.5 |
120.0 |
| CE |
CD |
HD2 |
HD1 |
119.4 |
240.0 |
| HD2 |
CD |
CE |
NZ |
62.1 |
60.0 |
| HD2 |
CD |
CE |
HE1 |
182.1 |
300.0 |
| HD2 |
CD |
CE |
HE2 |
303.5 |
180.0 |
| NZ |
CE |
CD |
HD1 |
182.9 |
300.0 |
| NZ |
CE |
CD |
HD2 |
62.1 |
60.0 |
| CD |
CE |
NZ |
HE1 |
120.0 |
240.0 |
| CD |
CE |
NZ |
HE2 |
241.4 |
120.0 |
| HE1 |
CE |
NZ |
HE2 |
121.4 |
240.0 |
| HZ1 |
NZ |
CE |
HZ2 |
240.0 |
246.3 |
| HE1 |
CE |
CD |
HD1 |
302.9 |
180.0 |
| HE1 |
CE |
CD |
HD2 |
182.1 |
300.0 |
| CD |
CE |
HE1 |
NZ |
237.4 |
120.0 |
| CD |
CE |
HE1 |
HE2 |
118.7 |
240.0 |
| NZ |
CE |
HE1 |
HE2 |
241.3 |
120.0 |
| HE1 |
CE |
NZ |
HZ1 |
87.3 |
300.0 |
| HE1 |
CE |
NZ |
HZ2 |
207.3 |
53.7 |
| HE2 |
CE |
CD |
HD1 |
64.3 |
60.0 |
| HE2 |
CE |
CD |
HD2 |
303.5 |
180.0 |
| CD |
CE |
HE2 |
NZ |
121.8 |
240.0 |
| CD |
CE |
HE2 |
HE1 |
240.9 |
120.0 |
| NZ |
CE |
HE2 |
HE1 |
119.1 |
240.0 |
| HE2 |
CE |
NZ |
HZ1 |
325.8 |
60.0 |
| HE2 |
CE |
NZ |
HZ2 |
85.8 |
173.7 |
| HZ1 |
NZ |
CE |
HE1 |
87.3 |
300.0 |
| HZ1 |
NZ |
CE |
HE2 |
325.8 |
60.0 |
| CE |
NZ |
HZ1 |
HZ2 |
120.0 |
113.8 |
| HZ2 |
NZ |
CE |
HE1 |
207.3 |
53.7 |
| HZ2 |
NZ |
CE |
HE2 |
85.8 |
173.7 |
| CE |
NZ |
HZ2 |
HZ1 |
240.0 |
246.3 |