PDB Chemical Component DNC
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DNC
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
O1 |
1.337 |
1.359 |
C1 |
C2 |
1.443 |
1.396 |
C1 |
C6 |
1.413 |
1.376 |
O1 |
HO1 |
0.950 |
0.966 |
C2 |
O2 |
1.350 |
1.353 |
C2 |
C3 |
1.454 |
1.414 |
O2 |
HO2 |
0.951 |
0.967 |
C3 |
N1 |
1.504 |
1.341 |
C3 |
C4 |
1.429 |
1.401 |
N1 |
O3 |
1.221 |
1.218 |
N1 |
O4 |
1.233 |
1.217 |
C4 |
C5 |
1.431 |
1.400 |
C4 |
H4 |
1.103 |
1.080 |
C5 |
N2 |
1.459 |
1.342 |
C5 |
C6 |
1.408 |
1.411 |
N2 |
O5 |
1.192 |
1.217 |
N2 |
O6 |
1.193 |
1.218 |
C6 |
H6 |
1.102 |
1.080 |
Bond Angles for DNC
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1 |
C2 |
121.4 |
119.9 |
O1 |
C1 |
C6 |
116.5 |
119.8 |
C1 |
O1 |
HO1 |
121.4 |
106.8 |
C2 |
C1 |
C6 |
122.0 |
120.3 |
C1 |
C2 |
O2 |
117.4 |
119.9 |
C1 |
C2 |
C3 |
119.3 |
120.1 |
C1 |
C6 |
C5 |
118.7 |
120.4 |
C1 |
C6 |
H6 |
120.8 |
119.8 |
O2 |
C2 |
C3 |
123.3 |
120.0 |
C2 |
O2 |
HO2 |
117.4 |
106.8 |
C2 |
C3 |
N1 |
124.9 |
120.2 |
C2 |
C3 |
C4 |
117.4 |
119.7 |
N1 |
C3 |
C4 |
117.7 |
120.2 |
C3 |
N1 |
O3 |
124.2 |
120.0 |
C3 |
N1 |
O4 |
118.2 |
120.0 |
C3 |
C4 |
C5 |
121.8 |
119.7 |
C3 |
C4 |
H4 |
119.0 |
120.1 |
O3 |
N1 |
O4 |
117.6 |
120.0 |
C5 |
C4 |
H4 |
119.2 |
120.2 |
C4 |
C5 |
N2 |
119.9 |
120.0 |
C4 |
C5 |
C6 |
120.8 |
120.0 |
N2 |
C5 |
C6 |
119.3 |
120.0 |
C5 |
N2 |
O5 |
119.5 |
120.0 |
C5 |
N2 |
O6 |
120.4 |
120.0 |
C5 |
C6 |
H6 |
120.5 |
119.8 |
O5 |
N2 |
O6 |
120.0 |
120.0 |
Torsion Angles for DNC
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
O1 |
C6 |
179.0 |
179.7 |
O1 |
C1 |
C2 |
O2 |
2.4 |
0.2 |
O1 |
C1 |
C2 |
C3 |
181.4 |
179.8 |
O1 |
C1 |
C6 |
C5 |
178.5 |
180.0 |
O1 |
C1 |
C6 |
H6 |
358.5 |
360.0 |
O1 |
C1 |
C2 |
C6 |
181.1 |
180.3 |
C2 |
C1 |
O1 |
HO1 |
180.0 |
269.8 |
C2 |
C1 |
C6 |
C5 |
359.6 |
0.3 |
C2 |
C1 |
C6 |
H6 |
179.6 |
180.2 |
O2 |
C2 |
C1 |
C3 |
181.1 |
180.4 |
C1 |
C2 |
O2 |
HO2 |
180.0 |
269.5 |
C1 |
C2 |
C3 |
N1 |
178.4 |
180.3 |
C1 |
C2 |
C3 |
C4 |
360.0 |
0.5 |
O1 |
C1 |
C6 |
C2 |
179.0 |
179.7 |
C6 |
C1 |
O1 |
HO1 |
1.0 |
90.1 |
C6 |
C1 |
C2 |
O2 |
181.4 |
179.9 |
C6 |
C1 |
C2 |
C3 |
0.3 |
359.5 |
C4 |
C5 |
C6 |
C1 |
0.3 |
359.9 |
N2 |
C5 |
C6 |
C1 |
180.6 |
179.9 |
C5 |
C6 |
C1 |
H6 |
180.0 |
180.1 |
HO1 |
O1 |
C1 |
C2 |
180.0 |
269.8 |
HO1 |
O1 |
C1 |
C6 |
1.0 |
90.1 |
O2 |
C2 |
C1 |
C6 |
181.4 |
179.9 |
C1 |
C2 |
O2 |
C3 |
178.9 |
179.6 |
O2 |
C2 |
C3 |
N1 |
357.3 |
359.9 |
O2 |
C2 |
C3 |
C4 |
178.8 |
180.0 |
C3 |
C2 |
C1 |
C6 |
0.3 |
359.5 |
C1 |
C2 |
C3 |
O2 |
181.1 |
180.4 |
C3 |
C2 |
O2 |
HO2 |
1.1 |
89.9 |
N1 |
C3 |
C2 |
C4 |
178.5 |
179.8 |
C2 |
C3 |
N1 |
O3 |
0.1 |
180.2 |
C2 |
C3 |
N1 |
O4 |
180.1 |
0.2 |
C2 |
C3 |
C4 |
C5 |
359.9 |
359.8 |
C2 |
C3 |
C4 |
H4 |
179.9 |
179.8 |
HO2 |
O2 |
C2 |
C3 |
1.1 |
89.9 |
C2 |
C3 |
N1 |
C4 |
181.5 |
180.2 |
N1 |
C3 |
C4 |
C5 |
181.3 |
179.9 |
N1 |
C3 |
C4 |
H4 |
1.3 |
360.0 |
O3 |
N1 |
C3 |
O4 |
180.0 |
180.0 |
C2 |
C3 |
C4 |
N1 |
178.6 |
179.8 |
C4 |
C3 |
N1 |
O3 |
178.6 |
360.0 |
C4 |
C3 |
N1 |
O4 |
358.6 |
180.0 |
C5 |
C4 |
C3 |
H4 |
180.0 |
180.0 |
C3 |
C4 |
C5 |
N2 |
179.6 |
180.0 |
C3 |
C4 |
C5 |
C6 |
359.9 |
0.0 |
O3 |
N1 |
C3 |
C4 |
178.6 |
360.0 |
C3 |
N1 |
O3 |
O4 |
180.0 |
180.0 |
O4 |
N1 |
C3 |
C4 |
358.6 |
180.0 |
C3 |
N1 |
O4 |
O3 |
180.0 |
180.0 |
C1 |
C6 |
C5 |
C4 |
0.3 |
359.9 |
C3 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
N2 |
C5 |
C4 |
C6 |
179.7 |
180.0 |
C4 |
C5 |
N2 |
O5 |
1.4 |
180.0 |
C4 |
C5 |
N2 |
O6 |
179.9 |
360.0 |
C4 |
C5 |
C6 |
H6 |
180.3 |
180.0 |
C3 |
C4 |
H4 |
C5 |
180.0 |
180.0 |
H4 |
C4 |
C5 |
N2 |
359.7 |
0.0 |
H4 |
C4 |
C5 |
C6 |
179.9 |
180.0 |
C1 |
C6 |
C5 |
N2 |
180.6 |
179.9 |
N2 |
C5 |
C4 |
H4 |
359.7 |
0.0 |
C4 |
C5 |
N2 |
C6 |
180.3 |
180.0 |
N2 |
C5 |
C6 |
H6 |
0.6 |
360.0 |
O5 |
N2 |
C5 |
O6 |
181.5 |
180.1 |
C1 |
C6 |
C5 |
H6 |
180.0 |
179.9 |
C6 |
C5 |
C4 |
H4 |
179.9 |
180.0 |
C4 |
C5 |
C6 |
N2 |
179.7 |
180.0 |
C6 |
C5 |
N2 |
O5 |
181.1 |
0.0 |
C6 |
C5 |
N2 |
O6 |
359.7 |
180.0 |
O5 |
N2 |
C5 |
C6 |
181.1 |
0.0 |
C5 |
N2 |
O5 |
O6 |
178.5 |
179.9 |
O6 |
N2 |
C5 |
C6 |
359.7 |
180.0 |
C5 |
N2 |
O6 |
O5 |
181.5 |
180.1 |
C1 |
C6 |
H6 |
C5 |
180.0 |
180.1 |