PDB Chemical Component DMZ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DMZ

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C18	C19	1.423	1.381
C18	C17	1.410	1.383
C18	H18	1.103	1.080
C19	C20	1.421	1.382
C19	C41	1.508	1.507
C20	C21	1.411	1.382
C20	H20	1.103	1.080
C21	C16	1.416	1.381
C21	H21	1.103	1.080
C16	C17	1.416	1.382
C16	S2	1.776	1.762
C17	H17	1.103	1.080
C41	H411	1.115	1.090
C41	H412	1.115	1.089
C41	H413	1.115	1.089
S2	O3	1.525	1.420
S2	O4	1.525	1.421
S2	N6	1.756	1.654
N6	C31	1.484	1.465
N6	C22	1.422	1.391
C31	H311	1.115	1.090
C31	H312	1.115	1.089
C31	H313	1.115	1.090
C22	C23	1.403	1.362
C22	N8	1.429	1.361
C23	C24	1.440	1.398
C23	H23	1.103	1.079
C24	N7	1.352	1.309
C24	H24	1.103	1.080
N7	N8	1.344	1.400
N8	C25	1.446	1.401
C25	C30	1.424	1.388
C25	C26	1.426	1.387
C30	C29	1.412	1.380
C30	H30	1.103	1.080
C29	C28	1.414	1.382
C29	H29	1.104	1.080
C28	C27	1.414	1.382
C28	H28	1.103	1.081
C27	C26	1.413	1.380
C27	H27	1.102	1.080
C26	H26	1.103	1.080

Bond Angles for DMZ

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C19	C18	C17	121.1	120.0
C19	C18	H18	119.9	120.0
C18	C19	C20	118.3	120.0
C18	C19	C41	120.8	120.0
C17	C18	H18	119.0	120.0
C18	C17	C16	120.0	120.0
C18	C17	H17	119.8	120.0
C20	C19	C41	120.9	120.0
C19	C20	C21	120.8	120.0
C19	C20	H20	120.0	120.0
C19	C41	H411	108.2	109.5
C19	C41	H412	120.8	109.5
C19	C41	H413	108.2	109.5
C21	C20	H20	119.3	120.0
C20	C21	C16	120.3	120.0
C20	C21	H21	119.7	120.0
C16	C21	H21	120.0	120.1
C21	C16	C17	119.5	120.0
C21	C16	S2	120.4	120.0
C17	C16	S2	120.1	120.0
C16	C17	H17	120.2	120.0
C16	S2	O3	109.8	105.7
C16	S2	O4	111.4	105.8
C16	S2	N6	105.6	107.4
H411	C41	H412	108.1	109.4
H411	C41	H413	101.8	109.5
H412	C41	H413	108.2	109.4
O3	S2	O4	112.7	125.3
O3	S2	N6	108.2	105.8
O4	S2	N6	108.7	105.8
S2	N6	C31	119.3	120.0
S2	N6	C22	118.3	120.0
C31	N6	C22	114.6	120.0
N6	C31	H311	108.7	109.5
N6	C31	H312	119.4	109.5
N6	C31	H313	108.6	109.4
N6	C22	C23	133.2	126.3
N6	C22	N8	121.2	126.3
H311	C31	H312	108.6	109.5
H311	C31	H313	101.3	109.5
H312	C31	H313	108.7	109.5
C23	C22	N8	105.6	107.4
C22	C23	C24	105.5	107.9
C22	C23	H23	126.3	126.0
C22	N8	N7	111.2	107.8
C22	N8	C25	131.6	126.1
C24	C23	H23	128.3	126.1
C23	C24	N7	110.5	108.5
C23	C24	H24	127.4	125.8
N7	C24	H24	122.2	125.8
C24	N7	N8	107.3	108.5
N7	N8	C25	117.2	126.2
N8	C25	C30	119.8	120.1
N8	C25	C26	120.3	120.1
C30	C25	C26	119.9	119.8
C25	C30	C29	119.5	120.0
C25	C30	H30	120.7	120.0
C25	C26	C27	119.8	120.0
C25	C26	H26	120.5	120.0
C29	C30	H30	119.8	120.1
C30	C29	C28	120.7	120.1
C30	C29	H29	119.6	120.0
C28	C29	H29	119.7	120.0
C29	C28	C27	120.0	120.1
C29	C28	H28	120.0	119.9
C27	C28	H28	120.1	119.9
C28	C27	C26	120.2	120.0
C28	C27	H27	120.0	120.0
C26	C27	H27	119.9	120.0
C27	C26	H26	119.6	120.0

Torsion Angles for DMZ

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C17	C18	C19	H18	180.0	179.8
C19	C18	C17	C16	0.1	0.4
C19	C18	C17	H17	180.1	180.1
C20	C19	C18	C41	180.1	180.0
C18	C19	C20	C21	0.1	360.0
C18	C19	C20	H20	180.1	180.0
C18	C19	C41	H411	54.7	270.0
C18	C19	C41	H412	180.0	30.0
C18	C19	C41	H413	305.2	150.0
C19	C18	C17	H18	180.0	180.2
C17	C18	C19	C20	359.9	359.8
C17	C18	C19	C41	179.8	179.9
C21	C16	C17	C18	360.0	359.5
C18	C17	C16	S2	180.3	179.8
C16	C17	C18	H17	180.0	180.4
C19	C18	H18	C17	180.0	179.8
H18	C18	C19	C20	179.9	180.0
H18	C18	C19	C41	359.8	0.1
H18	C18	C17	C16	180.1	180.2
H18	C18	C17	H17	0.1	359.9
C20	C19	C18	C17	359.9	359.8
C20	C19	C18	H18	179.9	180.0
C18	C19	C20	C41	179.9	180.0
C20	C19	C41	H411	234.7	90.0
C20	C19	C41	H412	359.9	210.0
C20	C19	C41	H413	125.2	330.0
C21	C20	C19	H20	180.0	180.0
C19	C20	C21	C16	359.9	360.0
C19	C20	C21	H21	179.9	180.0
C41	C19	C18	C17	179.8	179.9
C41	C19	C18	H18	359.8	0.1
C18	C19	C41	C20	180.1	180.0
C41	C19	C20	C21	180.2	179.9
C41	C19	C20	H20	0.2	360.0
H411	C41	C19	H412	234.8	240.0
H411	C41	C19	H413	109.5	120.0
H412	C41	C19	H413	234.7	240.0
C21	C20	C19	C41	180.2	179.9
C19	C20	C21	H20	180.0	180.0
C16	C21	C20	H21	180.0	180.0
C20	C21	C16	C17	0.0	0.3
C20	C21	C16	S2	179.7	180.0
H20	C20	C19	C41	0.2	360.0
C19	C20	H20	C21	180.0	180.0
H20	C20	C21	C16	179.9	179.9
H20	C20	C21	H21	359.9	359.9
C18	C17	C16	C21	360.0	359.5
C16	C21	C20	H20	179.9	179.9
C20	C21	C16	H21	180.0	180.0
C17	C16	C21	S2	180.3	180.3
C21	C16	C17	H17	179.9	179.9
C21	C16	S2	O3	228.3	337.4
C21	C16	S2	O4	353.9	202.7
C21	C16	S2	N6	111.8	90.0
H21	C21	C20	H20	359.9	359.9
C20	C21	H21	C16	180.0	180.0
H21	C21	C16	C17	180.0	180.3
H21	C21	C16	S2	359.7	360.0
C16	C17	C18	H18	180.1	180.2
C18	C17	C16	H17	180.0	179.6
C17	C16	C21	H21	180.0	180.3
C21	C16	C17	S2	179.7	179.7
C17	C16	S2	O3	48.0	157.1
C17	C16	S2	O4	173.6	22.4
C17	C16	S2	N6	291.5	269.7
S2	C16	C21	H21	359.7	360.0
C21	C16	S2	C17	180.3	180.3
S2	C16	C17	H17	0.2	0.2
O3	S2	C16	O4	234.4	134.7
O3	S2	C16	N6	116.5	247.4
O4	S2	C16	N6	242.1	112.7
C16	S2	N6	C31	55.1	90.0
C16	S2	N6	C22	267.3	270.0
H17	C17	C18	H18	0.1	359.9
C18	C17	H17	C16	180.0	180.4
H17	C17	C16	S2	0.2	0.2
C19	C41	H411	H412	132.4	120.0
C19	C41	H411	H413	246.2	239.9
H412	C41	H411	H413	113.8	119.9
C19	C41	H412	H411	234.7	240.0
C19	C41	H412	H413	125.3	120.0
H411	C41	H412	H413	250.5	240.0
C19	C41	H413	H411	113.8	120.0
C19	C41	H413	H412	227.6	240.0
H411	C41	H413	H412	113.8	119.9
C16	S2	O3	O4	124.9	237.0
C16	S2	O3	N6	245.1	113.7
O4	S2	O3	N6	120.2	236.8
O3	S2	N6	C31	297.5	202.6
O3	S2	N6	C22	149.7	22.6
C16	S2	O4	O3	236.0	123.0
C16	S2	O4	N6	116.0	246.3
O3	S2	O4	N6	240.0	123.2
O4	S2	N6	C31	174.8	337.4
O4	S2	N6	C22	27.0	157.4
C16	S2	N6	O3	117.6	247.4
C16	S2	N6	O4	240.3	112.6
O3	S2	N6	O4	122.7	225.2
C31	N6	S2	C22	147.8	180.0
S2	N6	C31	H311	54.7	174.8
S2	N6	C31	H312	180.0	294.8
S2	N6	C31	H313	305.3	54.8
S2	N6	C22	C23	45.8	97.2
S2	N6	C22	N8	225.9	276.9
S2	N6	C31	C22	211.1	180.0
C31	N6	C22	C23	256.6	277.2
C31	N6	C22	N8	76.7	96.9
H311	C31	N6	H312	234.7	239.9
H311	C31	N6	H313	109.5	120.0
H312	C31	N6	H313	234.7	240.0
S2	N6	C22	C31	149.2	180.0
C22	N6	C31	H311	203.6	354.8
C22	N6	C31	H312	328.9	114.8
C22	N6	C31	H313	94.2	234.8
C23	C22	N6	N8	179.9	180.4
N6	C22	C23	C24	180.0	180.0
N6	C22	C23	H23	360.0	0.0
N6	C22	N8	N7	180.0	179.9
N6	C22	N8	C25	0.0	0.3
H311	C31	N6	C22	203.6	354.8
N6	C31	H311	H312	131.3	120.1
N6	C31	H311	H313	245.7	240.1
H312	C31	H311	H313	114.4	120.0
H312	C31	N6	C22	328.9	114.8
N6	C31	H312	H311	234.7	239.9
N6	C31	H312	H313	125.3	119.9
H311	C31	H312	H313	250.5	240.0
H313	C31	N6	C22	94.2	234.8
N6	C31	H313	H311	114.3	120.0
N6	C31	H313	H312	228.7	240.0
H311	C31	H313	H312	114.3	120.0
N6	C22	C23	N8	180.1	179.7
C23	C22	N8	N7	0.1	359.6
C23	C22	N8	C25	180.1	180.0
C24	C23	C22	H23	180.0	180.0
C22	C23	C24	N7	0.1	360.0
C22	C23	C24	H24	180.1	180.0
N6	C22	N8	C23	179.9	180.3
N8	C22	C23	C24	359.9	0.3
N8	C22	C23	H23	179.9	180.3
C24	N7	N8	C22	360.0	0.4
N7	N8	C22	C25	180.0	179.5
C22	N8	C25	C30	53.1	137.5
C22	N8	C25	C26	232.9	317.2
C24	C23	C22	N8	359.9	0.3
C22	C23	C24	H23	180.0	180.0
N7	C24	C23	H24	180.0	180.0
C23	C24	N7	N8	360.0	359.7
H23	C23	C22	N8	179.9	180.3
C22	C23	H23	C24	180.0	180.0
H23	C23	C24	N7	180.1	180.0
H23	C23	C24	H24	0.1	360.0
C22	N8	N7	C24	360.0	0.4
N7	C24	C23	H23	180.1	180.0
C23	C24	N7	H24	180.0	180.0
C24	N7	N8	C25	179.9	180.0
H24	C24	C23	H23	0.1	360.0
C23	C24	H24	N7	180.0	180.0
H24	C24	N7	N8	180.0	179.7
C22	N8	N7	C25	180.0	180.5
N8	N7	C24	H24	180.0	179.7
N7	N8	C25	C30	233.1	318.1
N7	N8	C25	C26	52.9	137.8
C22	N8	C25	N7	180.0	179.5
C30	C25	N8	C26	180.3	180.3
N8	C25	C30	C29	179.8	180.0
N8	C25	C30	H30	359.8	359.9
N8	C25	C26	C27	180.2	179.7
N8	C25	C26	H26	0.2	0.3
N8	C25	C30	C26	179.7	179.7
C30	C25	C26	C27	359.9	359.4
C30	C25	C26	H26	179.9	180.0
C29	C30	C25	H30	180.0	180.0
C25	C30	C29	C28	360.0	0.0
C25	C30	C29	H29	180.0	180.0
N8	C25	C26	C30	180.3	180.3
C26	C25	C30	C29	0.0	0.3
C26	C25	C30	H30	180.0	180.2
C28	C27	C26	C25	0.1	0.6
C25	C26	C27	H27	180.1	180.4
C27	C26	C25	H26	180.0	179.4
C29	C30	C25	C26	0.0	0.3
C25	C30	C29	H30	180.0	180.0
C28	C29	C30	H29	180.0	180.0
C30	C29	C28	C27	0.0	360.0
C30	C29	C28	H28	180.1	180.0
H30	C30	C25	C26	180.0	180.2
C25	C30	H30	C29	180.0	180.0
H30	C30	C29	C28	180.0	180.1
H30	C30	C29	H29	360.0	0.0
C28	C29	C30	H30	180.0	180.1
C30	C29	C28	H29	180.0	180.0
C27	C28	C29	H28	180.0	180.0
C29	C28	C27	C26	359.9	359.7
C29	C28	C27	H27	179.9	180.0
H29	C29	C30	H30	360.0	0.0
C30	C29	H29	C28	180.0	180.0
H29	C29	C28	C27	180.1	180.0
H29	C29	C28	H28	0.1	0.0
C25	C26	C27	C28	0.1	0.6
C27	C28	C29	H29	180.1	180.0
C29	C28	C27	H28	180.0	180.0
C26	C27	C28	H27	180.0	179.8
C28	C27	C26	H26	180.1	180.0
H28	C28	C29	H29	0.1	0.0
C29	C28	H28	C27	180.0	180.0
H28	C28	C27	C26	179.9	179.7
H28	C28	C27	H27	359.9	360.0
C25	C26	C27	H26	180.0	180.6
C26	C27	C28	H28	179.9	179.7
C28	C27	C26	H27	180.0	180.2
H27	C27	C28	H28	359.9	360.0
C28	C27	H27	C26	180.0	179.8
H27	C27	C26	H26	0.1	359.8
C25	C26	H26	C27	180.0	179.4
H26	C26	C27	H27	0.1	359.8