PDB Chemical Component DMJ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DMJ

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C4	O4	1.435	1.428
C4	C3	1.602	1.531
C4	C5	1.581	1.529
C4	H4	1.115	1.090
O4	HO4	0.949	0.965
C3	O3	1.423	1.429
C3	C2	1.595	1.532
C3	H3	1.115	1.090
O3	HO3	0.951	0.966
C2	O2	1.418	1.428
C2	C1	1.585	1.531
C2	H2	1.115	1.090
O2	HO2	0.950	0.967
C1	N5	1.458	1.466
C1	H11	1.116	1.090
C1	H12	1.115	1.090
N5	C5	1.559	1.465
N5	HN5	1.019	1.010
C5	C6	1.559	1.530
C5	H5	1.114	1.091
C6	O6	1.435	1.428
C6	H61	1.115	1.090
C6	H62	1.115	1.090
O6	HO6	0.951	0.966

Bond Angles for DMJ

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O4	C4	C3	104.2	109.5
O4	C4	C5	104.8	109.6
O4	C4	H4	117.0	109.5
C4	O4	HO4	104.2	106.9
C3	C4	C5	113.1	109.2
C3	C4	H4	109.1	109.5
C4	C3	O3	114.4	109.7
C4	C3	C2	110.0	108.9
C4	C3	H3	105.4	109.6
C5	C4	H4	108.6	109.5
C4	C5	N5	103.6	109.8
C4	C5	C6	113.6	109.4
C4	C5	H5	111.3	109.4
O3	C3	C2	108.5	109.5
O3	C3	H3	106.9	109.5
C3	O3	HO3	114.4	106.8
C2	C3	H3	111.6	109.6
C3	C2	O2	109.9	109.6
C3	C2	C1	109.5	109.1
C3	C2	H2	109.7	109.5
O2	C2	C1	111.2	109.5
O2	C2	H2	108.0	109.6
C2	O2	HO2	110.0	106.8
C1	C2	H2	108.4	109.5
C2	C1	N5	105.3	109.7
C2	C1	H11	113.8	109.4
C2	C1	H12	113.8	109.4
N5	C1	H11	113.8	109.4
N5	C1	H12	113.8	109.5
C1	N5	C5	119.9	107.4
C1	N5	HN5	108.4	106.7
H11	C1	H12	96.6	109.4
C5	N5	HN5	108.5	106.7
N5	C5	C6	111.1	109.5
N5	C5	H5	113.8	109.4
C6	C5	H5	103.8	109.4
C5	C6	O6	141.6	109.5
C5	C6	H61	101.4	109.4
C5	C6	H62	101.4	109.5
O6	C6	H61	101.4	109.5
O6	C6	H62	101.4	109.5
C6	O6	HO6	141.6	106.8
H61	C6	H62	106.3	109.5

Torsion Angles for DMJ

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C3	C4	O4	C5	240.9	240.2
C3	C4	O4	H4	120.5	120.0
O4	C4	C3	O3	180.8	295.6
O4	C4	C3	C2	58.4	175.7
O4	C4	C3	H3	298.0	55.8
C5	C4	O4	H4	239.6	239.8
O4	C4	C5	N5	298.3	178.6
O4	C4	C5	C6	177.7	58.5
O4	C4	C5	H5	61.0	298.7
O4	C4	C3	C5	113.3	120.1
O4	C4	C3	H4	234.3	240.0
C3	C4	O4	HO4	180.0	59.9
C5	C4	C3	H4	121.1	119.9
C3	C4	C5	N5	51.2	298.6
C3	C4	C5	C6	290.6	178.5
C3	C4	C5	H5	173.9	58.6
O3	C3	C4	C2	122.4	119.9
O3	C3	C4	H3	242.9	239.7
C4	C3	O3	HO3	180.0	180.6
C2	C3	C4	H3	120.4	119.8
C4	C3	C2	O2	179.0	64.3
C4	C3	C2	C1	56.5	304.4
C4	C3	C2	H2	297.6	184.5
O4	C4	C5	C3	247.1	240.0
O4	C4	C5	H4	125.8	120.1
C5	C4	O4	HO4	299.1	179.7
C3	C4	C5	H4	238.7	240.1
C5	C4	C3	O3	67.6	175.5
C5	C4	C3	C2	305.2	55.6
C5	C4	C3	H3	184.7	295.8
C1	N5	C5	C4	298.5	65.7
C4	C5	N5	HN5	63.7	179.7
N5	C5	C4	C6	120.6	120.2
N5	C5	C4	H5	237.3	240.0
C6	C5	C4	H5	116.7	119.8
C4	C5	C6	O6	191.1	180.2
C4	C5	C6	H61	316.4	60.2
C4	C5	C6	H62	65.9	300.2
O4	C4	H4	C3	117.9	120.1
O4	C4	H4	C5	241.7	239.8
H4	C4	O4	HO4	59.5	299.9
C3	C4	H4	C5	123.8	119.7
H4	C4	C3	O3	306.5	55.6
H4	C4	C3	C2	184.1	295.7
H4	C4	C3	H3	63.7	175.9
H4	C4	C5	N5	172.5	58.5
H4	C4	C5	C6	51.9	298.3
H4	C4	C5	H5	295.2	178.5
HO4	O4	C4	C3	180.0	59.9
HO4	O4	C4	C5	299.1	179.7
HO4	O4	C4	H4	59.5	299.9
O3	C3	C4	C5	67.6	175.5
O3	C3	C4	H4	306.5	55.6
C4	C3	O3	C2	236.8	240.5
C4	C3	O3	H3	116.3	120.3
C2	C3	O3	H3	239.5	239.8
O3	C3	C2	O2	53.1	304.3
O3	C3	C2	C1	290.7	184.4
O3	C3	C2	H2	171.8	64.5
C2	C3	C4	C5	305.2	55.6
C2	C3	C4	H4	184.1	295.7
C4	C3	C2	O3	125.8	120.0
C4	C3	C2	H3	243.4	240.2
O3	C3	C2	H3	117.6	120.2
C2	C3	O3	HO3	303.2	300.1
O2	C2	C3	C1	122.5	119.9
O2	C2	C3	H2	241.4	239.8
C3	C2	O2	HO2	180.0	180.2
C1	C2	C3	H2	118.9	119.9
C3	C2	C1	N5	301.3	61.4
C3	C2	C1	H11	66.6	301.3
C3	C2	C1	H12	175.9	181.5
H3	C3	C4	C5	184.7	295.8
H3	C3	C4	H4	63.7	175.9
C4	C3	H3	O3	237.9	239.6
C4	C3	H3	C2	119.4	119.4
O3	C3	H3	C2	241.5	239.8
H3	C3	O3	HO3	63.7	60.2
H3	C3	C2	O2	295.6	184.2
H3	C3	C2	C1	173.1	64.2
H3	C3	C2	H2	54.2	304.4
HO3	O3	C3	C2	303.2	300.1
HO3	O3	C3	H3	63.7	60.2
O2	C2	C3	H3	295.6	184.2
C3	C2	O2	C1	238.5	240.3
C3	C2	O2	H2	119.7	120.2
C1	C2	O2	H2	241.1	239.9
O2	C2	C1	N5	179.6	301.4
O2	C2	C1	H11	304.9	181.3
O2	C2	C1	H12	54.3	61.5
C1	C2	C3	H3	173.1	64.2
C3	C2	C1	O2	121.7	119.9
C3	C2	C1	H2	240.3	240.1
O2	C2	C1	H2	118.6	120.2
C1	C2	O2	HO2	301.5	299.9
N5	C1	C2	H11	234.7	120.1
N5	C1	C2	H12	125.3	239.9
C2	C1	N5	C5	66.0	294.3
C2	C1	N5	HN5	300.8	180.2
H11	C1	C2	H12	250.6	119.8
H2	C2	C3	H3	54.2	304.4
C3	C2	H2	O2	240.2	239.8
C3	C2	H2	C1	119.6	119.6
O2	C2	H2	C1	239.4	239.8
H2	C2	O2	HO2	60.3	60.1
H2	C2	C1	N5	61.0	181.3
H2	C2	C1	H11	186.3	61.2
H2	C2	C1	H12	295.7	301.4
HO2	O2	C2	C1	301.5	299.9
HO2	O2	C2	H2	60.3	60.1
C4	C5	N5	C1	298.5	65.7
N5	C1	C2	H2	61.0	181.3
C2	C1	N5	H11	125.2	239.9
C2	C1	N5	H12	234.7	120.0
H11	C1	N5	H12	109.5	240.1
C5	N5	C1	HN5	125.3	114.1
C1	N5	C5	C6	60.8	185.8
C1	N5	C5	H5	177.5	305.7
H11	C1	C2	H2	186.3	61.2
C2	C1	H11	N5	239.4	120.3
C2	C1	H11	H12	119.6	240.2
N5	C1	H11	H12	240.3	119.9
H11	C1	N5	C5	300.8	54.4
H11	C1	N5	HN5	175.5	300.3
H12	C1	C2	H2	295.7	301.4
C2	C1	H12	N5	120.6	239.7
C2	C1	H12	H11	240.4	119.8
N5	C1	H12	H11	119.7	240.1
H12	C1	N5	C5	191.3	174.3
H12	C1	N5	HN5	66.0	60.2
N5	C5	C4	H4	172.5	58.5
C4	C5	N5	C6	237.7	239.9
C4	C5	N5	H5	121.0	120.0
C5	N5	C1	H11	300.8	54.4
C5	N5	C1	H12	191.3	174.3
C1	N5	C5	HN5	234.8	245.9
C6	C5	N5	H5	243.3	240.2
N5	C5	C6	O6	74.8	59.8
N5	C5	C6	H61	200.1	299.9
N5	C5	C6	H62	309.6	179.9
HN5	N5	C1	H11	175.5	300.3
HN5	N5	C1	H12	66.0	60.2
C1	N5	HN5	C5	131.7	114.6
HN5	N5	C5	C6	186.0	299.9
HN5	N5	C5	H5	302.7	59.7
C6	C5	C4	H4	51.9	298.3
C4	C5	C6	N5	116.3	120.3
C4	C5	C6	H5	239.0	240.2
C6	C5	N5	HN5	186.0	299.9
N5	C5	C6	H5	122.7	119.9
O6	C6	C5	H61	234.7	120.0
O6	C6	C5	H62	125.3	240.0
C5	C6	O6	HO6	180.0	180.0
H61	C6	C5	H62	250.6	120.0
H5	C5	C4	H4	295.2	178.5
C4	C5	H5	N5	243.4	239.7
C4	C5	H5	C6	122.6	119.8
H5	C5	N5	HN5	302.7	59.7
N5	C5	H5	C6	239.2	240.1
H5	C5	C6	O6	312.1	300.0
H5	C5	C6	H61	77.4	180.0
H5	C5	C6	H62	186.9	60.0
O6	C6	C5	H5	312.1	300.0
C5	C6	O6	H61	125.3	240.0
C5	C6	O6	H62	234.7	120.0
H61	C6	O6	H62	109.4	240.0
H61	C6	C5	H5	77.4	180.0
C5	C6	H61	O6	211.2	120.0
C5	C6	H61	H62	105.6	240.0
O6	C6	H61	H62	254.4	120.0
H61	C6	O6	HO6	54.7	300.0
H62	C6	C5	H5	186.9	60.0
C5	C6	H62	O6	148.8	240.0
C5	C6	H62	H61	254.4	120.0
O6	C6	H62	H61	105.6	240.0
H62	C6	O6	HO6	305.3	60.0
HO6	O6	C6	H61	54.7	300.0
HO6	O6	C6	H62	305.3	60.0