PDB Chemical Component DMG
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DMG
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OXT |
C |
1.239 |
1.343 |
| OXT |
HXT |
0.949 |
0.967 |
| O |
C |
1.265 |
1.207 |
| C |
CA |
1.547 |
1.506 |
| CA |
N |
1.466 |
1.469 |
| CA |
HA3 |
1.115 |
1.090 |
| CA |
HA2 |
1.115 |
1.089 |
| N |
C4 |
1.472 |
1.468 |
| N |
C5 |
1.436 |
1.469 |
| C4 |
H41 |
1.116 |
1.091 |
| C4 |
H42 |
1.116 |
1.090 |
| C4 |
H43 |
1.115 |
1.089 |
| C5 |
H51 |
1.116 |
1.091 |
| C5 |
H52 |
1.115 |
1.090 |
| C5 |
H53 |
1.114 |
1.090 |
Bond Angles for DMG
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C |
OXT |
HXT |
120.7 |
120.0 |
| OXT |
C |
O |
120.7 |
120.0 |
| OXT |
C |
CA |
119.9 |
120.0 |
| O |
C |
CA |
119.4 |
120.0 |
| C |
CA |
N |
108.9 |
109.5 |
| C |
CA |
HA3 |
112.4 |
109.5 |
| C |
CA |
HA2 |
112.4 |
109.5 |
| N |
CA |
HA3 |
112.4 |
109.4 |
| N |
CA |
HA2 |
112.4 |
109.5 |
| CA |
N |
C4 |
104.8 |
106.7 |
| CA |
N |
C5 |
108.8 |
106.7 |
| HA3 |
CA |
HA2 |
98.1 |
109.5 |
| C4 |
N |
C5 |
108.1 |
106.7 |
| N |
C4 |
H41 |
104.8 |
109.5 |
| N |
C4 |
H42 |
114.0 |
109.5 |
| N |
C4 |
H43 |
114.0 |
109.5 |
| N |
C5 |
H51 |
108.8 |
109.4 |
| N |
C5 |
H52 |
112.5 |
109.5 |
| N |
C5 |
H53 |
112.5 |
109.5 |
| H41 |
C4 |
H42 |
113.9 |
109.4 |
| H41 |
C4 |
H43 |
113.9 |
109.5 |
| H42 |
C4 |
H43 |
96.5 |
109.5 |
| H51 |
C5 |
H52 |
112.4 |
109.5 |
| H51 |
C5 |
H53 |
112.5 |
109.5 |
| H52 |
C5 |
H53 |
98.0 |
109.5 |
Torsion Angles for DMG
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
OXT |
CA |
179.8 |
180.2 |
| OXT |
C |
CA |
N |
181.2 |
180.1 |
| OXT |
C |
CA |
HA3 |
306.4 |
60.1 |
| OXT |
C |
CA |
HA2 |
55.9 |
300.1 |
| HXT |
OXT |
C |
O |
180.0 |
0.2 |
| HXT |
OXT |
C |
CA |
0.2 |
180.0 |
| O |
C |
OXT |
HXT |
180.0 |
0.2 |
| OXT |
C |
O |
CA |
180.2 |
179.8 |
| O |
C |
CA |
N |
1.3 |
359.9 |
| O |
C |
CA |
HA3 |
126.6 |
240.0 |
| O |
C |
CA |
HA2 |
236.1 |
119.9 |
| CA |
C |
OXT |
HXT |
0.2 |
180.0 |
| OXT |
C |
CA |
O |
179.8 |
180.2 |
| N |
CA |
C |
HA3 |
234.8 |
119.9 |
| N |
CA |
C |
HA2 |
125.3 |
239.9 |
| C |
CA |
N |
C4 |
87.4 |
180.1 |
| C |
CA |
N |
C5 |
202.8 |
293.9 |
| HA3 |
CA |
C |
HA2 |
250.5 |
120.0 |
| C |
CA |
N |
HA3 |
125.2 |
240.1 |
| C |
CA |
N |
HA2 |
234.7 |
120.1 |
| HA3 |
CA |
N |
HA2 |
109.5 |
240.0 |
| C4 |
N |
CA |
C5 |
244.5 |
246.2 |
| CA |
N |
C4 |
H41 |
180.0 |
180.0 |
| CA |
N |
C4 |
H42 |
305.2 |
300.0 |
| CA |
N |
C4 |
H43 |
54.7 |
60.0 |
| CA |
N |
C5 |
H51 |
180.0 |
66.2 |
| CA |
N |
C5 |
H52 |
305.2 |
186.2 |
| CA |
N |
C5 |
H53 |
54.8 |
306.2 |
| C |
CA |
HA3 |
N |
236.7 |
120.0 |
| C |
CA |
HA3 |
HA2 |
118.4 |
239.9 |
| N |
CA |
HA3 |
HA2 |
241.7 |
120.0 |
| HA3 |
CA |
N |
C4 |
322.2 |
300.0 |
| HA3 |
CA |
N |
C5 |
77.6 |
53.8 |
| C |
CA |
HA2 |
N |
123.3 |
239.9 |
| C |
CA |
HA2 |
HA3 |
241.7 |
120.0 |
| N |
CA |
HA2 |
HA3 |
118.3 |
240.1 |
| HA2 |
CA |
N |
C4 |
212.6 |
60.0 |
| HA2 |
CA |
N |
C5 |
328.1 |
173.8 |
| C4 |
N |
CA |
HA3 |
322.2 |
300.0 |
| C4 |
N |
CA |
HA2 |
212.6 |
60.0 |
| CA |
N |
C4 |
C5 |
116.0 |
113.8 |
| C4 |
N |
C5 |
H51 |
293.3 |
180.0 |
| C4 |
N |
C5 |
H52 |
58.5 |
300.0 |
| C4 |
N |
C5 |
H53 |
168.1 |
60.0 |
| H41 |
C4 |
N |
H42 |
234.8 |
240.0 |
| H41 |
C4 |
N |
H43 |
125.3 |
120.0 |
| H42 |
C4 |
N |
H43 |
250.5 |
240.0 |
| C5 |
N |
CA |
HA3 |
77.6 |
53.8 |
| C5 |
N |
CA |
HA2 |
328.1 |
173.8 |
| CA |
N |
C5 |
C4 |
246.7 |
246.2 |
| C5 |
N |
C4 |
H41 |
64.1 |
66.2 |
| C5 |
N |
C4 |
H42 |
189.3 |
186.2 |
| C5 |
N |
C4 |
H43 |
298.8 |
306.2 |
| H51 |
C5 |
N |
H52 |
234.8 |
240.0 |
| H51 |
C5 |
N |
H53 |
125.3 |
120.0 |
| H52 |
C5 |
N |
H53 |
250.4 |
240.0 |
| H41 |
C4 |
N |
C5 |
64.1 |
66.2 |
| N |
C4 |
H41 |
H42 |
125.3 |
120.0 |
| N |
C4 |
H41 |
H43 |
234.7 |
239.9 |
| H42 |
C4 |
H41 |
H43 |
109.4 |
119.9 |
| H42 |
C4 |
N |
C5 |
189.3 |
186.2 |
| N |
C4 |
H42 |
H41 |
239.7 |
240.0 |
| N |
C4 |
H42 |
H43 |
119.9 |
120.1 |
| H41 |
C4 |
H42 |
H43 |
240.2 |
240.1 |
| H43 |
C4 |
N |
C5 |
298.8 |
306.2 |
| N |
C4 |
H43 |
H41 |
120.3 |
120.0 |
| N |
C4 |
H43 |
H42 |
240.1 |
240.0 |
| H41 |
C4 |
H43 |
H42 |
119.8 |
119.9 |
| N |
C5 |
H51 |
H52 |
125.2 |
120.0 |
| N |
C5 |
H51 |
H53 |
234.7 |
240.0 |
| H52 |
C5 |
H51 |
H53 |
109.5 |
120.0 |
| N |
C5 |
H52 |
H51 |
236.8 |
240.0 |
| N |
C5 |
H52 |
H53 |
118.4 |
120.0 |
| H51 |
C5 |
H52 |
H53 |
241.6 |
240.0 |
| N |
C5 |
H53 |
H51 |
123.2 |
120.0 |
| N |
C5 |
H53 |
H52 |
241.6 |
240.0 |
| H51 |
C5 |
H53 |
H52 |
118.3 |
120.0 |