PDB Chemical Component DMA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DMA
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
O1 |
1.433 |
1.429 |
C1 |
C2 |
1.500 |
1.507 |
C1 |
H11 |
1.115 |
1.090 |
C1 |
H12 |
1.114 |
1.089 |
O1 |
PA |
1.621 |
1.610 |
C2 |
C3 |
1.330 |
1.310 |
C2 |
H2 |
1.103 |
1.080 |
C3 |
C4 |
1.494 |
1.507 |
C3 |
C5 |
1.557 |
1.506 |
C4 |
H41 |
1.115 |
1.089 |
C4 |
H42 |
1.115 |
1.090 |
C4 |
H43 |
1.115 |
1.089 |
C5 |
H51 |
1.115 |
1.090 |
C5 |
H52 |
1.115 |
1.091 |
C5 |
H53 |
1.116 |
1.089 |
PA |
O1A |
1.602 |
1.479 |
PA |
O2A |
1.613 |
1.609 |
PA |
O3A |
1.610 |
1.610 |
O2A |
HOA2 |
0.949 |
0.967 |
O3A |
PB |
1.569 |
1.610 |
PB |
O1B |
1.600 |
1.480 |
PB |
O2B |
1.607 |
1.610 |
PB |
O3B |
1.595 |
1.609 |
O2B |
HOB2 |
0.950 |
0.967 |
O3B |
HOB3 |
0.950 |
0.967 |
Bond Angles for DMA
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1 |
C2 |
107.1 |
109.4 |
O1 |
C1 |
H11 |
113.0 |
109.4 |
O1 |
C1 |
H12 |
113.1 |
109.4 |
C1 |
O1 |
PA |
123.4 |
106.8 |
C2 |
C1 |
H11 |
113.1 |
109.5 |
C2 |
C1 |
H12 |
113.1 |
109.5 |
C1 |
C2 |
C3 |
124.7 |
120.0 |
C1 |
C2 |
H2 |
124.2 |
120.0 |
H11 |
C1 |
H12 |
97.4 |
109.5 |
O1 |
PA |
O1A |
110.5 |
109.4 |
O1 |
PA |
O2A |
102.0 |
109.5 |
O1 |
PA |
O3A |
115.4 |
109.4 |
C3 |
C2 |
H2 |
111.0 |
120.0 |
C2 |
C3 |
C4 |
120.3 |
120.0 |
C2 |
C3 |
C5 |
115.5 |
120.0 |
C4 |
C3 |
C5 |
124.2 |
120.0 |
C3 |
C4 |
H41 |
120.3 |
109.5 |
C3 |
C4 |
H42 |
108.4 |
109.5 |
C3 |
C4 |
H43 |
108.4 |
109.5 |
C3 |
C5 |
H51 |
115.5 |
109.5 |
C3 |
C5 |
H52 |
110.1 |
109.5 |
C3 |
C5 |
H53 |
110.0 |
109.5 |
H41 |
C4 |
H42 |
108.3 |
109.4 |
H41 |
C4 |
H43 |
108.4 |
109.5 |
H42 |
C4 |
H43 |
101.6 |
109.5 |
H51 |
C5 |
H52 |
110.0 |
109.4 |
H51 |
C5 |
H53 |
110.0 |
109.5 |
H52 |
C5 |
H53 |
100.2 |
109.4 |
O1A |
PA |
O2A |
110.7 |
109.5 |
O1A |
PA |
O3A |
104.6 |
109.5 |
O2A |
PA |
O3A |
113.8 |
109.5 |
PA |
O2A |
HOA2 |
102.0 |
106.8 |
PA |
O3A |
PB |
126.9 |
106.8 |
O3A |
PB |
O1B |
114.7 |
109.5 |
O3A |
PB |
O2B |
107.1 |
109.5 |
O3A |
PB |
O3B |
103.1 |
109.5 |
O1B |
PB |
O2B |
111.8 |
109.4 |
O1B |
PB |
O3B |
108.3 |
109.4 |
O2B |
PB |
O3B |
111.5 |
109.5 |
PB |
O2B |
HOB2 |
107.0 |
106.9 |
PB |
O3B |
HOB3 |
103.2 |
106.8 |
Torsion Angles for DMA
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
O1 |
H11 |
234.8 |
120.0 |
C2 |
C1 |
O1 |
H12 |
125.3 |
240.0 |
O1 |
C1 |
C2 |
C3 |
129.6 |
135.6 |
O1 |
C1 |
C2 |
H2 |
309.7 |
315.5 |
H11 |
C1 |
O1 |
H12 |
250.5 |
120.0 |
C1 |
O1 |
PA |
O1A |
44.2 |
300.0 |
C1 |
O1 |
PA |
O2A |
161.9 |
60.0 |
C1 |
O1 |
PA |
O3A |
285.8 |
180.0 |
O1 |
C1 |
C2 |
H11 |
125.2 |
240.1 |
O1 |
C1 |
C2 |
H12 |
234.7 |
120.0 |
C2 |
C1 |
O1 |
PA |
157.5 |
180.0 |
H11 |
C1 |
C2 |
H12 |
109.5 |
239.9 |
C3 |
C2 |
C1 |
H2 |
179.9 |
180.2 |
C1 |
C2 |
C3 |
C4 |
3.1 |
185.8 |
C1 |
C2 |
C3 |
C5 |
181.0 |
5.7 |
O1 |
C1 |
H11 |
C2 |
238.0 |
119.9 |
O1 |
C1 |
H11 |
H12 |
119.0 |
240.0 |
H11 |
C1 |
O1 |
PA |
282.8 |
60.0 |
C2 |
C1 |
H11 |
H12 |
241.0 |
120.1 |
H11 |
C1 |
C2 |
C3 |
4.4 |
255.6 |
H11 |
C1 |
C2 |
H2 |
184.5 |
75.4 |
O1 |
C1 |
H12 |
C2 |
122.0 |
240.0 |
O1 |
C1 |
H12 |
H11 |
241.0 |
120.0 |
H12 |
C1 |
O1 |
PA |
32.3 |
300.0 |
C2 |
C1 |
H12 |
H11 |
119.0 |
239.9 |
H12 |
C1 |
C2 |
C3 |
254.9 |
15.7 |
H12 |
C1 |
C2 |
H2 |
75.0 |
195.5 |
PA |
O1 |
C1 |
C2 |
157.5 |
180.0 |
PA |
O1 |
C1 |
H11 |
282.8 |
60.0 |
PA |
O1 |
C1 |
H12 |
32.3 |
300.0 |
O1A |
PA |
O1 |
O2A |
242.3 |
240.0 |
O1A |
PA |
O1 |
O3A |
118.4 |
119.9 |
O2A |
PA |
O1 |
O3A |
236.2 |
239.9 |
O1 |
PA |
O2A |
HOA2 |
180.0 |
60.0 |
O1 |
PA |
O3A |
PB |
322.6 |
180.0 |
C3 |
C2 |
C1 |
H11 |
4.4 |
255.6 |
C3 |
C2 |
C1 |
H12 |
254.9 |
15.7 |
C1 |
C2 |
C3 |
H2 |
180.1 |
179.8 |
C4 |
C3 |
C2 |
C5 |
182.1 |
180.1 |
C2 |
C3 |
C4 |
H41 |
180.1 |
180.0 |
C2 |
C3 |
C4 |
H42 |
305.2 |
299.9 |
C2 |
C3 |
C4 |
H43 |
54.7 |
59.9 |
C2 |
C3 |
C5 |
H51 |
179.9 |
55.0 |
C2 |
C3 |
C5 |
H52 |
305.3 |
174.9 |
C2 |
C3 |
C5 |
H53 |
54.8 |
294.9 |
H2 |
C2 |
C1 |
H11 |
184.5 |
75.4 |
H2 |
C2 |
C1 |
H12 |
75.0 |
195.5 |
C1 |
C2 |
H2 |
C3 |
179.9 |
180.2 |
H2 |
C2 |
C3 |
C4 |
183.0 |
6.0 |
H2 |
C2 |
C3 |
C5 |
0.9 |
185.9 |
C4 |
C3 |
C2 |
H2 |
183.0 |
6.0 |
C2 |
C3 |
C4 |
C5 |
177.7 |
179.9 |
C4 |
C3 |
C5 |
H51 |
357.8 |
234.9 |
C4 |
C3 |
C5 |
H52 |
123.1 |
354.8 |
C4 |
C3 |
C5 |
H53 |
232.6 |
114.8 |
H41 |
C4 |
C3 |
H42 |
234.8 |
240.1 |
H41 |
C4 |
C3 |
H43 |
125.3 |
120.0 |
H42 |
C4 |
C3 |
H43 |
250.5 |
240.0 |
C5 |
C3 |
C2 |
H2 |
0.9 |
185.9 |
C2 |
C3 |
C5 |
C4 |
182.2 |
180.1 |
C5 |
C3 |
C4 |
H41 |
2.3 |
0.1 |
C5 |
C3 |
C4 |
H42 |
127.5 |
120.0 |
C5 |
C3 |
C4 |
H43 |
237.0 |
240.0 |
H51 |
C5 |
C3 |
H52 |
234.7 |
240.0 |
H51 |
C5 |
C3 |
H53 |
125.2 |
120.0 |
H52 |
C5 |
C3 |
H53 |
250.5 |
240.0 |
H41 |
C4 |
C3 |
C5 |
2.3 |
0.1 |
C3 |
C4 |
H41 |
H42 |
125.2 |
120.0 |
C3 |
C4 |
H41 |
H43 |
234.7 |
239.9 |
H42 |
C4 |
H41 |
H43 |
109.5 |
120.0 |
H42 |
C4 |
C3 |
C5 |
127.5 |
120.0 |
C3 |
C4 |
H42 |
H41 |
228.0 |
240.0 |
C3 |
C4 |
H42 |
H43 |
114.0 |
120.0 |
H41 |
C4 |
H42 |
H43 |
246.0 |
240.1 |
H43 |
C4 |
C3 |
C5 |
237.0 |
240.0 |
C3 |
C4 |
H43 |
H41 |
132.0 |
120.1 |
C3 |
C4 |
H43 |
H42 |
246.0 |
240.0 |
H41 |
C4 |
H43 |
H42 |
113.9 |
119.9 |
C3 |
C5 |
H51 |
H52 |
125.3 |
120.0 |
C3 |
C5 |
H51 |
H53 |
234.8 |
239.9 |
H52 |
C5 |
H51 |
H53 |
109.5 |
119.9 |
C3 |
C5 |
H52 |
H51 |
231.6 |
240.0 |
C3 |
C5 |
H52 |
H53 |
115.8 |
120.1 |
H51 |
C5 |
H52 |
H53 |
244.2 |
240.1 |
C3 |
C5 |
H53 |
H51 |
128.3 |
120.0 |
C3 |
C5 |
H53 |
H52 |
244.1 |
240.0 |
H51 |
C5 |
H53 |
H52 |
115.8 |
119.9 |
O1 |
PA |
O1A |
O2A |
112.2 |
120.0 |
O1 |
PA |
O1A |
O3A |
235.2 |
240.1 |
O2A |
PA |
O1A |
O3A |
123.0 |
120.1 |
O1A |
PA |
O2A |
HOA2 |
297.6 |
180.0 |
O1A |
PA |
O3A |
PB |
200.9 |
60.1 |
O1 |
PA |
O2A |
O1A |
242.4 |
240.1 |
O1 |
PA |
O2A |
O3A |
124.9 |
120.0 |
O1A |
PA |
O2A |
O3A |
242.5 |
239.9 |
O2A |
PA |
O3A |
PB |
80.0 |
300.0 |
O1 |
PA |
O3A |
O1A |
121.7 |
119.9 |
O1 |
PA |
O3A |
O2A |
242.6 |
240.0 |
O1A |
PA |
O3A |
O2A |
120.9 |
120.1 |
O3A |
PA |
O2A |
HOA2 |
55.1 |
300.0 |
PA |
O3A |
PB |
O1B |
233.9 |
60.0 |
PA |
O3A |
PB |
O2B |
109.1 |
179.9 |
PA |
O3A |
PB |
O3B |
351.4 |
300.0 |
HOA2 |
O2A |
PA |
O3A |
55.1 |
300.0 |
O1B |
PB |
O3A |
O2B |
124.7 |
240.1 |
O1B |
PB |
O3A |
O3B |
242.5 |
120.0 |
O2B |
PB |
O3A |
O3B |
117.8 |
239.9 |
O3A |
PB |
O2B |
HOB2 |
180.1 |
180.0 |
O3A |
PB |
O3B |
HOB3 |
180.0 |
300.0 |
O3A |
PB |
O1B |
O2B |
237.8 |
120.0 |
O3A |
PB |
O1B |
O3B |
114.6 |
240.0 |
O2B |
PB |
O1B |
O3B |
236.7 |
120.0 |
O1B |
PB |
O2B |
HOB2 |
53.6 |
300.0 |
O1B |
PB |
O3B |
HOB3 |
302.0 |
180.0 |
O3A |
PB |
O2B |
O1B |
126.5 |
240.0 |
O3A |
PB |
O2B |
O3B |
247.9 |
120.1 |
O1B |
PB |
O2B |
O3B |
121.4 |
240.1 |
O2B |
PB |
O3B |
HOB3 |
65.4 |
60.0 |
O3A |
PB |
O3B |
O1B |
238.0 |
120.0 |
O3A |
PB |
O3B |
O2B |
114.6 |
239.9 |
O1B |
PB |
O3B |
O2B |
236.6 |
119.9 |
O3B |
PB |
O2B |
HOB2 |
292.2 |
59.9 |
HOB2 |
O2B |
PB |
O3B |
292.2 |
59.9 |