PDB Chemical Component DM1

Ideal Model

Chemical Description

Name DAUNOMYCIN
Synonyms DAUNORUBICIN
Formula C27 H29 N O10
Formal charge 0
Molecular weight 527.520 g/mol
Component type NON-POLYMER

Chemical features

Atom count 67
Chiral atom count 6
Chiral atoms C10 C12 C1' C3' C4' C5'
Bond count 71
Aromatic bond count 12

Chemical Identifiers

Systematic name (ACDLabs) (1S,3S)-3-acetyl-3,5,12-trihydroxy-10-methoxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracen-1-yl 3-amino-2,3,6-trideoxy-alpha-L-lyxo-hexopyranoside
Systematic name (OpenEye OEToolkits) (7S,9S)-7-[(2R,4S,5S,6S)-4-amino-5-hydroxy-6-methyl-oxan-2-yl]oxy-9-ethanoyl-6,9,11-trihydroxy-4-methoxy-8,10-dihydro-7H-tetracene-5,12-dione

Chemical Descriptors

Stereo SMILES (CACTVS) COc1cccc2C(=O)c3c(O)c4C[C@](O)(C[C@H](O[C@H]5C[C@H](N)[C@H](O)[C@H](C)O5)c4c(O)c3C(=O)c12)C(C)=O
SMILES (CACTVS) COc1cccc2C(=O)c3c(O)c4C[C](O)(C[CH](O[CH]5C[CH](N)[CH](O)[CH](C)O5)c4c(O)c3C(=O)c12)C(C)=O
Stereo SMILES (OpenEye) C[C@H]1[C@H]([C@H](C[C@@H](O1)O[C@H]2C[C@@](Cc3c2c(c4c(c3O)C(=O)c5cccc(c5C4=O)OC)O)(C(=O)C)O)N)O
InChI descriptor InChI=1S/C27H29NO10/c1-10-22(30)14(28)7-17(37-10)38-16-9-27(35,11(2)29)8-13-19(16)26(34)21-20(24(13)32)23(31)12-5-4-6-15(36-3)18(12)25(21)33/h4-6,10,14,16-17,22,30,32,34-35H,7-9,28H2,1-3H3/t10-,14-,16-,17-,22+,27-/m0/s1
InChIKey descriptor STQGQHZAVUOBTE-VGBVRHCVSA-N

Status Information

Last modified 2020-06-17
Created 1999-07-08
Release status REL
Model PDB code 1D11
Processing site RCSB