PDB Chemical Component DM0
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DM0
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OXT |
C |
1.334 |
1.342 |
| N |
CA |
1.487 |
1.469 |
| N |
CM1 |
1.517 |
1.469 |
| N |
CM2 |
1.472 |
1.469 |
| CA |
CB |
1.528 |
1.530 |
| CA |
C |
1.525 |
1.507 |
| CB |
CG |
1.518 |
1.530 |
| CG |
CD |
1.522 |
1.529 |
| CD |
CE |
1.537 |
1.530 |
| CE |
NZ |
1.486 |
1.469 |
| NZ |
CH1 |
1.467 |
1.470 |
| NZ |
CH2 |
1.466 |
1.468 |
| C |
O |
1.216 |
1.209 |
| CA |
HA |
1.100 |
1.090 |
| CB |
HB |
1.100 |
1.089 |
| CB |
HBA |
1.100 |
1.090 |
| CG |
HG |
1.100 |
1.090 |
| CG |
HGA |
1.100 |
1.090 |
| CD |
HD |
1.100 |
1.090 |
| CD |
HDA |
1.100 |
1.090 |
| CE |
HE |
1.100 |
1.090 |
| CE |
HEA |
1.100 |
1.091 |
| CH1 |
HH1 |
1.100 |
1.090 |
| CH1 |
HH1A |
1.100 |
1.090 |
| CH1 |
HH1B |
1.100 |
1.090 |
| CH2 |
HH2 |
1.100 |
1.090 |
| CH2 |
HH2A |
1.100 |
1.090 |
| CH2 |
HH2B |
1.100 |
1.091 |
| CM1 |
HM1 |
1.100 |
1.090 |
| CM1 |
HM1A |
1.100 |
1.090 |
| CM1 |
HM1B |
1.100 |
1.090 |
| CM2 |
HM2 |
1.100 |
1.090 |
| CM2 |
HM2A |
1.100 |
1.090 |
| CM2 |
HM2B |
1.100 |
1.090 |
| HXT |
OXT |
0.950 |
0.968 |
Bond Angles for DM0
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OXT |
C |
CA |
117.0 |
120.0 |
| OXT |
C |
O |
121.8 |
120.0 |
| CA |
N |
CM1 |
111.9 |
111.0 |
| CA |
N |
CM2 |
107.4 |
111.0 |
| N |
CA |
CB |
113.5 |
109.5 |
| N |
CA |
C |
112.6 |
109.5 |
| N |
CA |
HA |
104.4 |
109.5 |
| CM1 |
N |
CM2 |
111.9 |
111.0 |
| N |
CM1 |
HM1 |
109.5 |
109.5 |
| N |
CM1 |
HM1A |
109.4 |
109.4 |
| N |
CM1 |
HM1B |
109.4 |
109.4 |
| N |
CM2 |
HM2 |
109.5 |
109.4 |
| N |
CM2 |
HM2A |
109.5 |
109.4 |
| N |
CM2 |
HM2B |
109.5 |
109.5 |
| CB |
CA |
C |
109.6 |
109.4 |
| CA |
CB |
CG |
108.8 |
109.5 |
| CB |
CA |
HA |
107.7 |
109.5 |
| CA |
CB |
HB |
109.7 |
109.4 |
| CA |
CB |
HBA |
109.8 |
109.4 |
| CA |
C |
O |
121.2 |
120.0 |
| C |
CA |
HA |
108.7 |
109.4 |
| CB |
CG |
CD |
116.3 |
109.5 |
| CG |
CB |
HB |
109.7 |
109.5 |
| CG |
CB |
HBA |
109.8 |
109.5 |
| CB |
CG |
HG |
107.3 |
109.5 |
| CB |
CG |
HGA |
105.7 |
109.5 |
| CG |
CD |
CE |
113.2 |
109.5 |
| CD |
CG |
HG |
107.2 |
109.5 |
| CD |
CG |
HGA |
105.7 |
109.5 |
| CG |
CD |
HD |
108.3 |
109.5 |
| CG |
CD |
HDA |
107.4 |
109.5 |
| CD |
CE |
NZ |
115.3 |
109.5 |
| CE |
CD |
HD |
108.2 |
109.5 |
| CE |
CD |
HDA |
107.4 |
109.4 |
| CD |
CE |
HE |
107.6 |
109.5 |
| CD |
CE |
HEA |
106.2 |
109.4 |
| CE |
NZ |
CH1 |
110.3 |
111.0 |
| CE |
NZ |
CH2 |
110.3 |
111.0 |
| NZ |
CE |
HE |
107.6 |
109.5 |
| NZ |
CE |
HEA |
106.3 |
109.5 |
| CH1 |
NZ |
CH2 |
131.6 |
111.0 |
| NZ |
CH1 |
HH1 |
109.5 |
109.5 |
| NZ |
CH1 |
HH1A |
109.5 |
109.4 |
| NZ |
CH1 |
HH1B |
109.5 |
109.4 |
| NZ |
CH2 |
HH2 |
109.5 |
109.5 |
| NZ |
CH2 |
HH2A |
109.5 |
109.5 |
| NZ |
CH2 |
HH2B |
109.4 |
109.5 |
| HB |
CB |
HBA |
109.0 |
109.5 |
| HG |
CG |
HGA |
115.0 |
109.4 |
| HD |
CD |
HDA |
112.4 |
109.4 |
| HE |
CE |
HEA |
114.1 |
109.5 |
| HH1 |
CH1 |
HH1A |
109.5 |
109.5 |
| HH1 |
CH1 |
HH1B |
109.5 |
109.5 |
| HH1A |
CH1 |
HH1B |
109.5 |
109.5 |
| HH2 |
CH2 |
HH2A |
109.5 |
109.5 |
| HH2 |
CH2 |
HH2B |
109.5 |
109.5 |
| HH2A |
CH2 |
HH2B |
109.5 |
109.4 |
| HM1 |
CM1 |
HM1A |
109.5 |
109.5 |
| HM1 |
CM1 |
HM1B |
109.5 |
109.5 |
| HM1A |
CM1 |
HM1B |
109.5 |
109.5 |
| HM2 |
CM2 |
HM2A |
109.4 |
109.5 |
| HM2 |
CM2 |
HM2B |
109.5 |
109.5 |
| HM2A |
CM2 |
HM2B |
109.5 |
109.5 |
Torsion Angles for DM0
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
CA |
C |
OXT |
127.4 |
160.0 |
| CB |
CA |
C |
OXT |
254.8 |
280.0 |
| CA |
C |
OXT |
O |
180.1 |
180.0 |
| OXT |
C |
CA |
HA |
12.2 |
40.0 |
| OXT |
C |
CA |
N |
127.4 |
160.0 |
| CM1 |
N |
CA |
CM2 |
123.2 |
236.1 |
| CA |
N |
CM1 |
HM1 |
337.7 |
60.0 |
| CA |
N |
CM1 |
HM1A |
97.7 |
180.0 |
| CA |
N |
CM1 |
HM1B |
217.7 |
300.0 |
| CA |
N |
CM2 |
HM2 |
206.6 |
65.8 |
| CA |
N |
CM2 |
HM2A |
326.6 |
185.7 |
| CA |
N |
CM2 |
HM2B |
86.6 |
305.7 |
| CB |
CA |
N |
C |
234.7 |
240.0 |
| N |
CA |
CB |
CG |
176.8 |
57.5 |
| CB |
CA |
N |
HA |
117.0 |
120.1 |
| N |
CA |
CB |
HB |
296.8 |
177.5 |
| N |
CA |
CB |
HBA |
56.6 |
297.5 |
| N |
CA |
C |
O |
307.5 |
340.0 |
| C |
CA |
N |
HA |
242.3 |
240.1 |
| CA |
N |
CM1 |
CM2 |
239.3 |
123.9 |
| CM1 |
N |
CA |
CB |
172.4 |
53.4 |
| CM1 |
N |
CA |
C |
297.7 |
173.4 |
| CM1 |
N |
CA |
HA |
55.5 |
293.4 |
| CM1 |
N |
CM2 |
HM2 |
83.3 |
189.7 |
| CM1 |
N |
CM2 |
HM2A |
203.3 |
309.7 |
| CM1 |
N |
CM2 |
HM2B |
323.3 |
69.6 |
| HM1 |
CM1 |
N |
HM1A |
240.0 |
240.0 |
| HM1 |
CM1 |
N |
HM1B |
120.0 |
120.0 |
| HM1A |
CM1 |
N |
HM1B |
240.0 |
240.0 |
| CA |
N |
CM2 |
CM1 |
123.2 |
236.1 |
| CM2 |
N |
CA |
CB |
49.2 |
177.4 |
| CM2 |
N |
CA |
C |
174.5 |
297.4 |
| CM2 |
N |
CA |
HA |
292.2 |
57.3 |
| CM2 |
N |
CM1 |
HM1 |
98.4 |
296.1 |
| CM2 |
N |
CM1 |
HM1A |
218.3 |
56.1 |
| CM2 |
N |
CM1 |
HM1B |
338.4 |
176.1 |
| HM2 |
CM2 |
N |
HM2A |
240.0 |
240.0 |
| HM2 |
CM2 |
N |
HM2B |
120.0 |
120.1 |
| HM2A |
CM2 |
N |
HM2B |
240.0 |
240.1 |
| OXT |
C |
CA |
CB |
254.8 |
280.0 |
| CB |
CA |
N |
CM1 |
172.4 |
53.4 |
| CB |
CA |
N |
CM2 |
49.2 |
177.4 |
| N |
CA |
CB |
C |
126.9 |
120.0 |
| N |
CA |
CB |
HA |
245.0 |
240.0 |
| CB |
CA |
C |
O |
74.9 |
100.0 |
| C |
CA |
CB |
HA |
118.1 |
120.0 |
| CA |
CB |
CG |
CD |
166.3 |
175.9 |
| CG |
CB |
CA |
HB |
240.0 |
239.9 |
| CG |
CB |
CA |
HBA |
120.3 |
120.0 |
| CA |
CB |
CG |
HG |
286.3 |
295.9 |
| CA |
CB |
CG |
HGA |
49.4 |
55.8 |
| HB |
CB |
CA |
HBA |
240.2 |
240.0 |
| OXT |
C |
CA |
O |
179.9 |
180.0 |
| C |
CA |
N |
CM1 |
297.7 |
173.4 |
| C |
CA |
N |
CM2 |
174.5 |
297.4 |
| N |
CA |
C |
CB |
232.6 |
240.0 |
| N |
CA |
C |
HA |
115.1 |
120.0 |
| C |
CA |
CB |
CG |
50.0 |
297.5 |
| CB |
CA |
C |
HA |
242.6 |
240.0 |
| C |
CA |
CB |
HB |
169.9 |
57.5 |
| C |
CA |
CB |
HBA |
289.7 |
177.5 |
| CG |
CB |
CA |
C |
50.0 |
297.5 |
| CG |
CB |
CA |
HA |
291.9 |
177.5 |
| CA |
CB |
CG |
HB |
120.0 |
120.0 |
| CA |
CB |
CG |
HBA |
239.7 |
240.0 |
| CB |
CG |
CD |
CE |
175.6 |
180.0 |
| CD |
CG |
CB |
HG |
240.0 |
240.0 |
| CD |
CG |
CB |
HGA |
116.9 |
120.0 |
| CB |
CG |
CD |
HD |
295.6 |
300.0 |
| CB |
CG |
CD |
HDA |
57.3 |
60.0 |
| HB |
CB |
CG |
HBA |
119.7 |
120.0 |
| HG |
CG |
CB |
HGA |
236.9 |
240.0 |
| CD |
CG |
CB |
HB |
46.3 |
55.9 |
| CD |
CG |
CB |
HBA |
286.5 |
295.8 |
| CB |
CG |
CD |
HG |
120.0 |
120.0 |
| CB |
CG |
CD |
HGA |
243.1 |
240.0 |
| CG |
CD |
CE |
NZ |
171.7 |
180.0 |
| CE |
CD |
CG |
HD |
240.0 |
240.0 |
| CE |
CD |
CG |
HDA |
118.4 |
120.0 |
| CG |
CD |
CE |
HE |
291.7 |
300.0 |
| CG |
CD |
CE |
HEA |
54.3 |
60.0 |
| HG |
CG |
CD |
HGA |
123.1 |
120.0 |
| HD |
CD |
CG |
HDA |
238.4 |
240.0 |
| CE |
CD |
CG |
HG |
55.6 |
60.0 |
| CE |
CD |
CG |
HGA |
292.5 |
300.0 |
| CG |
CD |
CE |
HD |
120.0 |
120.0 |
| CG |
CD |
CE |
HDA |
241.6 |
240.0 |
| CD |
CE |
NZ |
CH1 |
79.5 |
66.1 |
| CD |
CE |
NZ |
CH2 |
286.6 |
190.0 |
| NZ |
CE |
CD |
HE |
240.0 |
239.9 |
| NZ |
CE |
CD |
HEA |
117.4 |
120.0 |
| HD |
CD |
CE |
HDA |
121.6 |
119.9 |
| HE |
CE |
CD |
HEA |
237.4 |
240.0 |
| NZ |
CE |
CD |
HD |
51.7 |
59.9 |
| NZ |
CE |
CD |
HDA |
290.1 |
300.0 |
| CD |
CE |
NZ |
HE |
120.0 |
120.0 |
| CD |
CE |
NZ |
HEA |
242.6 |
240.0 |
| CH1 |
NZ |
CE |
CH2 |
152.9 |
236.0 |
| CE |
NZ |
CH1 |
HH1 |
143.0 |
60.0 |
| CE |
NZ |
CH1 |
HH1A |
263.0 |
180.0 |
| CE |
NZ |
CH1 |
HH1B |
23.0 |
300.0 |
| CE |
NZ |
CH2 |
HH2 |
37.6 |
60.0 |
| CE |
NZ |
CH2 |
HH2A |
157.6 |
180.0 |
| CE |
NZ |
CH2 |
HH2B |
277.6 |
300.0 |
| HE |
CE |
NZ |
HEA |
122.6 |
120.0 |
| CE |
NZ |
CH1 |
CH2 |
214.8 |
124.0 |
| CH1 |
NZ |
CE |
HE |
319.5 |
306.0 |
| CH1 |
NZ |
CE |
HEA |
196.9 |
186.0 |
| CH1 |
NZ |
CH2 |
HH2 |
252.4 |
184.0 |
| CH1 |
NZ |
CH2 |
HH2A |
12.4 |
304.0 |
| CH1 |
NZ |
CH2 |
HH2B |
132.4 |
63.9 |
| HH1 |
CH1 |
NZ |
HH1A |
240.0 |
240.0 |
| HH1 |
CH1 |
NZ |
HH1B |
120.0 |
120.0 |
| HH1A |
CH1 |
NZ |
HH1B |
240.0 |
240.0 |
| CE |
NZ |
CH2 |
CH1 |
145.2 |
236.0 |
| CH2 |
NZ |
CE |
HE |
166.6 |
70.0 |
| CH2 |
NZ |
CE |
HEA |
44.0 |
310.0 |
| CH2 |
NZ |
CH1 |
HH1 |
288.2 |
296.1 |
| CH2 |
NZ |
CH1 |
HH1A |
48.2 |
56.0 |
| CH2 |
NZ |
CH1 |
HH1B |
168.2 |
176.0 |
| HH2 |
CH2 |
NZ |
HH2A |
240.0 |
240.0 |
| HH2 |
CH2 |
NZ |
HH2B |
120.0 |
120.0 |
| HH2A |
CH2 |
NZ |
HH2B |
240.0 |
240.1 |
| OXT |
C |
O |
CA |
180.1 |
180.0 |
| O |
C |
CA |
HA |
192.3 |
220.0 |
| HA |
CA |
N |
CM1 |
55.5 |
293.4 |
| HA |
CA |
N |
CM2 |
292.2 |
57.3 |
| N |
CA |
HA |
CB |
121.0 |
120.1 |
| N |
CA |
HA |
C |
239.6 |
240.0 |
| CB |
CA |
HA |
C |
118.7 |
120.0 |
| HA |
CA |
CB |
CG |
291.9 |
177.5 |
| HA |
CA |
CB |
HB |
51.9 |
297.6 |
| HA |
CA |
CB |
HBA |
171.6 |
57.5 |
| HA |
CA |
C |
O |
192.3 |
220.0 |
| HB |
CB |
CA |
C |
169.9 |
57.5 |
| CA |
CB |
HB |
CG |
240.5 |
240.0 |
| HB |
CB |
CA |
HA |
51.9 |
297.6 |
| CA |
CB |
HB |
HBA |
120.3 |
120.0 |
| HB |
CB |
CG |
CD |
46.3 |
55.9 |
| CG |
CB |
HB |
HBA |
239.7 |
240.0 |
| HB |
CB |
CG |
HG |
166.3 |
175.9 |
| HB |
CB |
CG |
HGA |
289.4 |
295.8 |
| HBA |
CB |
CA |
C |
289.7 |
177.5 |
| CA |
CB |
HBA |
CG |
119.6 |
120.0 |
| HBA |
CB |
CA |
HA |
171.6 |
57.5 |
| CA |
CB |
HBA |
HB |
239.8 |
240.0 |
| HBA |
CB |
CG |
CD |
286.5 |
295.8 |
| CG |
CB |
HBA |
HB |
120.2 |
120.1 |
| HBA |
CB |
CG |
HG |
46.6 |
55.9 |
| HBA |
CB |
CG |
HGA |
169.7 |
175.8 |
| CB |
CG |
HG |
CD |
234.4 |
240.0 |
| HG |
CG |
CB |
HB |
166.3 |
175.9 |
| HG |
CG |
CB |
HBA |
46.6 |
55.9 |
| CB |
CG |
HG |
HGA |
117.2 |
120.0 |
| HG |
CG |
CD |
CE |
55.6 |
60.0 |
| CD |
CG |
HG |
HGA |
242.8 |
240.0 |
| HG |
CG |
CD |
HD |
175.6 |
180.0 |
| HG |
CG |
CD |
HDA |
297.2 |
300.0 |
| CB |
CG |
HGA |
CD |
123.8 |
120.0 |
| HGA |
CG |
CB |
HB |
289.4 |
295.8 |
| HGA |
CG |
CB |
HBA |
169.7 |
175.8 |
| CB |
CG |
HGA |
HG |
241.9 |
240.0 |
| HGA |
CG |
CD |
CE |
292.5 |
300.0 |
| CD |
CG |
HGA |
HG |
118.1 |
120.0 |
| HGA |
CG |
CD |
HD |
52.5 |
60.0 |
| HGA |
CG |
CD |
HDA |
174.1 |
180.0 |
| CG |
CD |
HD |
CE |
236.9 |
240.0 |
| HD |
CD |
CG |
HG |
175.6 |
180.0 |
| HD |
CD |
CG |
HGA |
52.5 |
60.0 |
| CG |
CD |
HD |
HDA |
118.5 |
120.0 |
| HD |
CD |
CE |
NZ |
51.7 |
59.9 |
| CE |
CD |
HD |
HDA |
241.6 |
240.1 |
| HD |
CD |
CE |
HE |
171.7 |
180.0 |
| HD |
CD |
CE |
HEA |
294.3 |
300.0 |
| CG |
CD |
HDA |
CE |
122.1 |
120.0 |
| HDA |
CD |
CG |
HG |
297.2 |
300.0 |
| HDA |
CD |
CG |
HGA |
174.1 |
180.0 |
| CG |
CD |
HDA |
HD |
241.0 |
240.0 |
| HDA |
CD |
CE |
NZ |
290.1 |
300.0 |
| CE |
CD |
HDA |
HD |
118.9 |
120.0 |
| HDA |
CD |
CE |
HE |
50.1 |
60.1 |
| HDA |
CD |
CE |
HEA |
172.7 |
180.0 |
| CD |
CE |
HE |
NZ |
235.3 |
239.9 |
| HE |
CE |
CD |
HD |
171.7 |
180.0 |
| HE |
CE |
CD |
HDA |
50.1 |
60.1 |
| CD |
CE |
HE |
HEA |
117.6 |
120.0 |
| HE |
CE |
NZ |
CH1 |
319.5 |
306.0 |
| HE |
CE |
NZ |
CH2 |
166.6 |
70.0 |
| NZ |
CE |
HE |
HEA |
242.3 |
240.0 |
| CD |
CE |
HEA |
NZ |
123.2 |
120.0 |
| HEA |
CE |
CD |
HD |
294.3 |
300.0 |
| HEA |
CE |
CD |
HDA |
172.7 |
180.0 |
| CD |
CE |
HEA |
HE |
241.6 |
240.0 |
| HEA |
CE |
NZ |
CH1 |
196.9 |
186.0 |
| HEA |
CE |
NZ |
CH2 |
44.0 |
310.0 |
| NZ |
CE |
HEA |
HE |
118.4 |
120.0 |
| HH1 |
CH1 |
NZ |
CH2 |
288.2 |
296.1 |
| NZ |
CH1 |
HH1 |
HH1A |
120.0 |
119.9 |
| NZ |
CH1 |
HH1 |
HH1B |
240.0 |
240.0 |
| HH1A |
CH1 |
HH1 |
HH1B |
120.0 |
120.1 |
| HH1A |
CH1 |
NZ |
CH2 |
48.2 |
56.0 |
| NZ |
CH1 |
HH1A |
HH1 |
240.0 |
240.1 |
| NZ |
CH1 |
HH1A |
HH1B |
120.0 |
120.0 |
| HH1 |
CH1 |
HH1A |
HH1B |
240.0 |
239.9 |
| HH1B |
CH1 |
NZ |
CH2 |
168.2 |
176.0 |
| NZ |
CH1 |
HH1B |
HH1 |
120.0 |
120.0 |
| NZ |
CH1 |
HH1B |
HH1A |
240.0 |
240.0 |
| HH1 |
CH1 |
HH1B |
HH1A |
120.0 |
120.1 |
| NZ |
CH2 |
HH2 |
HH2A |
120.0 |
120.0 |
| NZ |
CH2 |
HH2 |
HH2B |
240.0 |
239.9 |
| HH2A |
CH2 |
HH2 |
HH2B |
120.0 |
119.9 |
| NZ |
CH2 |
HH2A |
HH2 |
240.0 |
239.9 |
| NZ |
CH2 |
HH2A |
HH2B |
120.0 |
120.0 |
| HH2 |
CH2 |
HH2A |
HH2B |
240.0 |
240.0 |
| NZ |
CH2 |
HH2B |
HH2 |
120.0 |
120.1 |
| NZ |
CH2 |
HH2B |
HH2A |
240.0 |
240.0 |
| HH2 |
CH2 |
HH2B |
HH2A |
120.0 |
120.0 |
| HM1 |
CM1 |
N |
CM2 |
98.4 |
296.1 |
| N |
CM1 |
HM1 |
HM1A |
120.0 |
120.0 |
| N |
CM1 |
HM1 |
HM1B |
240.0 |
240.0 |
| HM1A |
CM1 |
HM1 |
HM1B |
120.1 |
120.1 |
| HM1A |
CM1 |
N |
CM2 |
218.3 |
56.1 |
| N |
CM1 |
HM1A |
HM1 |
240.0 |
240.0 |
| N |
CM1 |
HM1A |
HM1B |
120.0 |
120.0 |
| HM1 |
CM1 |
HM1A |
HM1B |
240.0 |
240.0 |
| HM1B |
CM1 |
N |
CM2 |
338.4 |
176.1 |
| N |
CM1 |
HM1B |
HM1 |
120.0 |
120.0 |
| N |
CM1 |
HM1B |
HM1A |
240.0 |
240.0 |
| HM1 |
CM1 |
HM1B |
HM1A |
120.0 |
120.0 |
| N |
CM2 |
HM2 |
HM2A |
120.0 |
119.9 |
| N |
CM2 |
HM2 |
HM2B |
240.0 |
240.0 |
| HM2A |
CM2 |
HM2 |
HM2B |
120.0 |
120.1 |
| N |
CM2 |
HM2A |
HM2 |
240.0 |
240.1 |
| N |
CM2 |
HM2A |
HM2B |
120.0 |
119.9 |
| HM2 |
CM2 |
HM2A |
HM2B |
240.0 |
239.9 |
| N |
CM2 |
HM2B |
HM2 |
120.0 |
120.0 |
| N |
CM2 |
HM2B |
HM2A |
240.0 |
240.1 |
| HM2 |
CM2 |
HM2B |
HM2A |
119.9 |
120.1 |