PDB Chemical Component DLY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DLY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.454 |
1.468 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.020 |
1.008 |
| CA |
C |
1.529 |
1.506 |
| CA |
CB |
1.530 |
1.529 |
| CA |
HA |
1.091 |
1.090 |
| C |
O |
1.231 |
1.208 |
| C |
OXT |
1.326 |
1.342 |
| CB |
CG |
1.530 |
1.529 |
| CB |
HB2 |
1.091 |
1.090 |
| CB |
HB3 |
1.090 |
1.090 |
| CG |
CD |
1.530 |
1.529 |
| CG |
HG2 |
1.089 |
1.091 |
| CG |
HG3 |
1.090 |
1.090 |
| CD |
CE |
1.530 |
1.529 |
| CD |
HD2 |
1.091 |
1.091 |
| CD |
HD3 |
1.089 |
1.090 |
| CE |
NZ |
1.479 |
1.468 |
| CE |
HE2 |
1.090 |
1.090 |
| CE |
HE3 |
1.090 |
1.090 |
| NZ |
HZ1 |
1.015 |
1.009 |
| NZ |
HZ2 |
1.015 |
1.009 |
| OXT |
HXT |
0.949 |
0.968 |
Bond Angles for DLY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
114.9 |
106.7 |
| CA |
N |
H2 |
112.2 |
106.8 |
| N |
CA |
C |
109.3 |
109.5 |
| N |
CA |
CB |
110.5 |
109.4 |
| N |
CA |
HA |
107.4 |
109.5 |
| H |
N |
H2 |
82.9 |
106.7 |
| C |
CA |
CB |
113.7 |
109.5 |
| C |
CA |
HA |
108.5 |
109.4 |
| CA |
C |
O |
120.5 |
120.0 |
| CA |
C |
OXT |
115.0 |
120.0 |
| CB |
CA |
HA |
107.2 |
109.4 |
| CA |
CB |
CG |
111.1 |
109.5 |
| CA |
CB |
HB2 |
109.7 |
109.5 |
| CA |
CB |
HB3 |
109.7 |
109.5 |
| O |
C |
OXT |
124.4 |
120.0 |
| C |
OXT |
HXT |
115.0 |
120.0 |
| CG |
CB |
HB2 |
109.7 |
109.4 |
| CG |
CB |
HB3 |
109.7 |
109.5 |
| CB |
CG |
CD |
111.0 |
109.6 |
| CB |
CG |
HG2 |
109.7 |
109.4 |
| CB |
CG |
HG3 |
109.6 |
109.5 |
| HB2 |
CB |
HB3 |
107.0 |
109.4 |
| CD |
CG |
HG2 |
109.7 |
109.4 |
| CD |
CG |
HG3 |
109.7 |
109.5 |
| CG |
CD |
CE |
111.0 |
109.6 |
| CG |
CD |
HD2 |
109.7 |
109.4 |
| CG |
CD |
HD3 |
109.6 |
109.5 |
| HG2 |
CG |
HG3 |
107.0 |
109.5 |
| CE |
CD |
HD2 |
109.7 |
109.4 |
| CE |
CD |
HD3 |
109.8 |
109.5 |
| CD |
CE |
NZ |
110.4 |
109.5 |
| CD |
CE |
HE2 |
109.8 |
109.4 |
| CD |
CE |
HE3 |
109.8 |
109.5 |
| HD2 |
CD |
HD3 |
107.0 |
109.4 |
| NZ |
CE |
HE2 |
109.9 |
109.4 |
| NZ |
CE |
HE3 |
109.9 |
109.4 |
| CE |
NZ |
HZ1 |
112.1 |
106.8 |
| CE |
NZ |
HZ2 |
112.0 |
106.7 |
| HE2 |
CE |
HE3 |
107.0 |
109.5 |
| HZ1 |
NZ |
HZ2 |
106.8 |
106.7 |
Torsion Angles for DLY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
267.6 |
113.8 |
| C |
CA |
N |
CB |
234.2 |
240.0 |
| C |
CA |
N |
HA |
117.5 |
120.0 |
| N |
CA |
C |
O |
48.8 |
30.0 |
| N |
CA |
C |
OXT |
228.8 |
209.9 |
| CB |
CA |
N |
HA |
243.4 |
240.0 |
| N |
CA |
CB |
CG |
36.2 |
60.0 |
| N |
CA |
CB |
HB2 |
274.9 |
300.0 |
| N |
CA |
CB |
HB3 |
157.6 |
180.0 |
| CA |
N |
H |
H2 |
111.3 |
246.1 |
| H |
N |
CA |
C |
322.3 |
53.8 |
| H |
N |
CA |
CB |
88.1 |
173.8 |
| H |
N |
CA |
HA |
204.8 |
293.8 |
| CA |
N |
H2 |
H |
245.9 |
113.8 |
| H2 |
N |
CA |
C |
54.7 |
300.0 |
| H2 |
N |
CA |
CB |
180.5 |
60.0 |
| H2 |
N |
CA |
HA |
297.2 |
180.0 |
| C |
CA |
N |
H |
322.3 |
53.8 |
| C |
CA |
N |
H2 |
54.7 |
300.0 |
| N |
CA |
C |
CB |
124.0 |
120.0 |
| N |
CA |
C |
HA |
243.2 |
240.0 |
| CB |
CA |
C |
HA |
119.2 |
120.0 |
| C |
CA |
CB |
CG |
159.6 |
180.0 |
| C |
CA |
CB |
HB2 |
38.2 |
60.0 |
| C |
CA |
CB |
HB3 |
281.0 |
300.0 |
| O |
C |
CA |
OXT |
180.0 |
180.1 |
| CA |
C |
OXT |
HXT |
180.0 |
180.1 |
| CB |
CA |
N |
H |
88.1 |
173.8 |
| CB |
CA |
N |
H2 |
180.5 |
60.0 |
| N |
CA |
CB |
C |
236.7 |
240.0 |
| N |
CA |
CB |
HA |
116.7 |
120.0 |
| C |
CA |
CB |
HA |
240.1 |
240.0 |
| CB |
CA |
C |
O |
284.8 |
270.1 |
| CB |
CA |
C |
OXT |
104.9 |
90.0 |
| CG |
CB |
CA |
HB2 |
121.4 |
120.0 |
| CG |
CB |
CA |
HB3 |
238.6 |
239.9 |
| CA |
CB |
CG |
CD |
275.0 |
180.0 |
| CA |
CB |
CG |
HG2 |
153.6 |
60.0 |
| CA |
CB |
CG |
HG3 |
36.4 |
300.1 |
| HB2 |
CB |
CA |
HB3 |
117.2 |
119.9 |
| HA |
CA |
N |
H |
204.8 |
293.8 |
| HA |
CA |
N |
H2 |
297.2 |
180.0 |
| N |
CA |
HA |
C |
118.1 |
120.0 |
| N |
CA |
HA |
CB |
241.3 |
240.0 |
| C |
CA |
HA |
CB |
123.2 |
120.0 |
| HA |
CA |
C |
O |
165.6 |
150.1 |
| HA |
CA |
C |
OXT |
345.6 |
330.0 |
| HA |
CA |
CB |
CG |
279.5 |
300.0 |
| HA |
CA |
CB |
HB2 |
158.1 |
180.0 |
| HA |
CA |
CB |
HB3 |
40.9 |
60.0 |
| O |
C |
CA |
CB |
284.8 |
270.1 |
| O |
C |
CA |
HA |
165.6 |
150.1 |
| CA |
C |
O |
OXT |
180.1 |
179.9 |
| O |
C |
OXT |
HXT |
0.0 |
359.9 |
| OXT |
C |
CA |
CB |
104.9 |
90.0 |
| OXT |
C |
CA |
HA |
345.6 |
330.0 |
| CA |
C |
OXT |
O |
180.0 |
180.1 |
| CG |
CB |
CA |
HA |
279.5 |
300.0 |
| CA |
CB |
CG |
HB2 |
238.6 |
240.0 |
| CA |
CB |
CG |
HB3 |
121.4 |
120.1 |
| HB2 |
CB |
CG |
HB3 |
242.8 |
240.1 |
| CD |
CG |
CB |
HG2 |
121.5 |
120.0 |
| CD |
CG |
CB |
HG3 |
238.6 |
239.9 |
| CB |
CG |
CD |
CE |
152.3 |
180.0 |
| CB |
CG |
CD |
HD2 |
30.9 |
60.0 |
| CB |
CG |
CD |
HD3 |
273.7 |
300.1 |
| HG2 |
CG |
CB |
HG3 |
117.2 |
119.9 |
| HB2 |
CB |
CA |
HA |
158.1 |
180.0 |
| CA |
CB |
HB2 |
CG |
122.2 |
120.1 |
| CA |
CB |
HB2 |
HB3 |
241.1 |
240.0 |
| CG |
CB |
HB2 |
HB3 |
118.9 |
119.9 |
| HB2 |
CB |
CG |
CD |
36.4 |
300.0 |
| HB2 |
CB |
CG |
HG2 |
275.0 |
180.0 |
| HB2 |
CB |
CG |
HG3 |
157.8 |
60.1 |
| HB3 |
CB |
CA |
HA |
40.9 |
60.0 |
| CA |
CB |
HB3 |
CG |
237.8 |
239.9 |
| CA |
CB |
HB3 |
HB2 |
118.9 |
120.0 |
| CG |
CB |
HB3 |
HB2 |
241.2 |
240.1 |
| HB3 |
CB |
CG |
CD |
153.6 |
59.9 |
| HB3 |
CB |
CG |
HG2 |
32.2 |
299.9 |
| HB3 |
CB |
CG |
HG3 |
275.0 |
180.0 |
| CD |
CG |
CB |
HB2 |
36.4 |
300.0 |
| CD |
CG |
CB |
HB3 |
153.6 |
59.9 |
| CB |
CG |
CD |
HG2 |
238.6 |
240.0 |
| CB |
CG |
CD |
HG3 |
121.3 |
120.1 |
| HG2 |
CG |
CD |
HG3 |
242.7 |
240.0 |
| CE |
CD |
CG |
HD2 |
121.4 |
120.0 |
| CE |
CD |
CG |
HD3 |
238.6 |
239.9 |
| CG |
CD |
CE |
NZ |
102.9 |
180.0 |
| CG |
CD |
CE |
HE2 |
341.6 |
60.0 |
| CG |
CD |
CE |
HE3 |
224.2 |
300.0 |
| HD2 |
CD |
CG |
HD3 |
117.2 |
119.9 |
| HG2 |
CG |
CB |
HB2 |
275.0 |
180.0 |
| HG2 |
CG |
CB |
HB3 |
32.2 |
299.9 |
| CB |
CG |
HG2 |
CD |
122.2 |
120.0 |
| CB |
CG |
HG2 |
HG3 |
241.2 |
240.0 |
| CD |
CG |
HG2 |
HG3 |
119.0 |
120.0 |
| HG2 |
CG |
CD |
CE |
273.7 |
300.0 |
| HG2 |
CG |
CD |
HD2 |
152.3 |
180.0 |
| HG2 |
CG |
CD |
HD3 |
35.2 |
60.0 |
| HG3 |
CG |
CB |
HB2 |
157.8 |
60.1 |
| HG3 |
CG |
CB |
HB3 |
275.0 |
180.0 |
| CB |
CG |
HG3 |
CD |
237.9 |
239.9 |
| CB |
CG |
HG3 |
HG2 |
118.9 |
119.9 |
| CD |
CG |
HG3 |
HG2 |
241.0 |
240.1 |
| HG3 |
CG |
CD |
CE |
31.0 |
59.9 |
| HG3 |
CG |
CD |
HD2 |
269.6 |
299.9 |
| HG3 |
CG |
CD |
HD3 |
152.4 |
180.0 |
| CE |
CD |
CG |
HG2 |
273.7 |
300.0 |
| CE |
CD |
CG |
HG3 |
31.0 |
59.9 |
| CG |
CD |
CE |
HD2 |
238.7 |
240.0 |
| CG |
CD |
CE |
HD3 |
121.4 |
120.1 |
| HD2 |
CD |
CE |
HD3 |
242.7 |
240.1 |
| NZ |
CE |
CD |
HE2 |
121.3 |
120.0 |
| NZ |
CE |
CD |
HE3 |
238.7 |
240.0 |
| CD |
CE |
NZ |
HZ1 |
62.2 |
180.0 |
| CD |
CE |
NZ |
HZ2 |
302.1 |
293.8 |
| HE2 |
CE |
CD |
HE3 |
117.4 |
120.0 |
| HD2 |
CD |
CG |
HG2 |
152.3 |
180.0 |
| HD2 |
CD |
CG |
HG3 |
269.6 |
299.9 |
| CG |
CD |
HD2 |
CE |
122.1 |
120.1 |
| CG |
CD |
HD2 |
HD3 |
241.2 |
240.0 |
| CE |
CD |
HD2 |
HD3 |
119.0 |
119.9 |
| HD2 |
CD |
CE |
NZ |
224.3 |
300.0 |
| HD2 |
CD |
CE |
HE2 |
102.9 |
180.1 |
| HD2 |
CD |
CE |
HE3 |
345.5 |
60.0 |
| HD3 |
CD |
CG |
HG2 |
35.2 |
60.0 |
| HD3 |
CD |
CG |
HG3 |
152.4 |
180.0 |
| CG |
CD |
HD3 |
CE |
237.8 |
239.9 |
| CG |
CD |
HD3 |
HD2 |
118.8 |
119.9 |
| CE |
CD |
HD3 |
HD2 |
241.0 |
240.1 |
| HD3 |
CD |
CE |
NZ |
341.6 |
59.9 |
| HD3 |
CD |
CE |
HE2 |
220.2 |
299.9 |
| HD3 |
CD |
CE |
HE3 |
102.8 |
179.9 |
| NZ |
CE |
CD |
HD2 |
224.3 |
300.0 |
| NZ |
CE |
CD |
HD3 |
341.6 |
59.9 |
| CD |
CE |
NZ |
HE2 |
238.7 |
240.0 |
| CD |
CE |
NZ |
HE3 |
121.2 |
120.0 |
| HE2 |
CE |
NZ |
HE3 |
242.5 |
240.0 |
| HZ1 |
NZ |
CE |
HZ2 |
120.1 |
246.2 |
| HE2 |
CE |
CD |
HD2 |
102.9 |
180.1 |
| HE2 |
CE |
CD |
HD3 |
220.2 |
299.9 |
| CD |
CE |
HE2 |
NZ |
121.7 |
120.0 |
| CD |
CE |
HE2 |
HE3 |
240.9 |
240.0 |
| NZ |
CE |
HE2 |
HE3 |
119.3 |
119.9 |
| HE2 |
CE |
NZ |
HZ1 |
183.5 |
300.0 |
| HE2 |
CE |
NZ |
HZ2 |
63.4 |
53.7 |
| HE3 |
CE |
CD |
HD2 |
345.5 |
60.0 |
| HE3 |
CE |
CD |
HD3 |
102.8 |
179.9 |
| CD |
CE |
HE3 |
NZ |
238.4 |
239.9 |
| CD |
CE |
HE3 |
HE2 |
119.1 |
120.0 |
| NZ |
CE |
HE3 |
HE2 |
240.7 |
240.0 |
| HE3 |
CE |
NZ |
HZ1 |
301.0 |
60.0 |
| HE3 |
CE |
NZ |
HZ2 |
180.9 |
173.7 |
| HZ1 |
NZ |
CE |
HE2 |
183.5 |
300.0 |
| HZ1 |
NZ |
CE |
HE3 |
301.0 |
60.0 |
| CE |
NZ |
HZ1 |
HZ2 |
236.9 |
113.8 |
| HZ2 |
NZ |
CE |
HE2 |
63.4 |
53.7 |
| HZ2 |
NZ |
CE |
HE3 |
180.9 |
173.7 |
| CE |
NZ |
HZ2 |
HZ1 |
123.1 |
246.1 |