PDB Chemical Component DLG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DLG

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.536 1.531
C1 O1 1.429 1.428
C1 O5 1.437 1.424
C1 H1 1.115 1.090
C2 C3 1.531 1.533
C2 O2 1.444 1.429
C2 H2 1.115 1.090
C3 C4 1.529 1.532
C3 H3 1.114 1.089
C3 H32 1.116 1.090
C4 C5 1.533 1.530
C4 O4 1.419 1.429
C4 H4 1.115 1.090
C5 C6 1.516 1.530
C5 O5 1.445 1.427
C5 H5 1.115 1.091
C6 O6 1.422 1.429
C6 H61 1.115 1.090
C6 H62 1.115 1.089
O1 C11 1.464 1.429
O2 HO2 0.950 0.967
O4 HO4 0.950 0.966
O6 HO6 0.950 0.967
C11 C12 1.546 1.530
C11 H111 1.115 1.089
C11 H112 1.115 1.090
C12 C13 1.593 1.529
C12 H121 1.115 1.090
C12 H122 1.115 1.090
C13 C14 1.623 1.530
C13 H131 1.115 1.090
C13 H132 1.114 1.090
C14 C15 1.578 1.529
C14 H141 1.115 1.090
C14 H142 1.115 1.089
C15 C16 1.522 1.530
C15 H151 1.115 1.089
C15 H152 1.114 1.090
C16 H161 1.114 1.090
C16 H162 1.115 1.090
C16 H163 1.116 1.089

Bond Angles for DLG

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 O1 110.4 109.4
C2 C1 O5 110.2 109.8
C2 C1 H1 107.8 109.3
C1 C2 C3 109.5 109.0
C1 C2 O2 109.8 109.6
C1 C2 H2 109.3 109.6
O1 C1 O5 108.0 109.5
O1 C1 H1 110.1 109.4
C1 O1 C11 112.0 106.8
O5 C1 H1 110.3 109.4
C1 O5 C5 112.6 107.7
C3 C2 O2 109.8 109.6
C3 C2 H2 109.4 109.5
C2 C3 C4 109.5 108.6
C2 C3 H3 112.2 109.6
C2 C3 H32 112.2 109.6
O2 C2 H2 109.0 109.5
C2 O2 HO2 109.8 106.8
C4 C3 H3 112.2 109.6
C4 C3 H32 112.2 109.6
C3 C4 C5 109.9 109.1
C3 C4 O4 109.3 109.6
C3 C4 H4 109.3 109.5
H3 C3 H32 98.2 109.8
C5 C4 O4 109.5 109.6
C5 C4 H4 109.1 109.6
C4 C5 C6 112.5 109.4
C4 C5 O5 109.9 109.8
C4 C5 H5 106.3 109.4
O4 C4 H4 109.7 109.5
C4 O4 HO4 109.3 106.8
C6 C5 O5 106.9 109.5
C6 C5 H5 109.4 109.4
C5 C6 O6 111.3 109.5
C5 C6 H61 111.5 109.5
C5 C6 H62 111.5 109.5
O5 C5 H5 111.9 109.3
O6 C6 H61 111.6 109.5
O6 C6 H62 111.6 109.4
C6 O6 HO6 111.2 106.8
H61 C6 H62 98.8 109.5
O1 C11 C12 99.7 109.5
O1 C11 H111 116.0 109.5
O1 C11 H112 115.9 109.4
C12 C11 H111 116.0 109.5
C12 C11 H112 116.0 109.4
C11 C12 C13 116.2 109.5
C11 C12 H121 109.8 109.5
C11 C12 H122 109.7 109.4
H111 C11 H112 94.5 109.5
C13 C12 H121 109.8 109.5
C13 C12 H122 109.8 109.4
C12 C13 C14 114.9 109.6
C12 C13 H131 110.2 109.5
C12 C13 H132 110.2 109.4
H121 C12 H122 100.3 109.4
C14 C13 H131 110.2 109.4
C14 C13 H132 110.3 109.4
C13 C14 C15 120.9 109.6
C13 C14 H141 108.1 109.4
C13 C14 H142 108.1 109.4
H131 C13 H132 100.1 109.4
C15 C14 H141 108.2 109.5
C15 C14 H142 108.2 109.5
C14 C15 C16 115.4 109.5
C14 C15 H151 110.0 109.5
C14 C15 H152 110.0 109.5
H141 C14 H142 101.8 109.4
C16 C15 H151 110.0 109.5
C16 C15 H152 110.1 109.4
C15 C16 H161 115.4 109.5
C15 C16 H162 110.0 109.4
C15 C16 H163 110.0 109.5
H151 C15 H152 100.2 109.5
H161 C16 H162 110.1 109.4
H161 C16 H163 110.0 109.5
H162 C16 H163 100.1 109.5

Torsion Angles for DLG

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O1 C1 C2 O5 119.2 120.2
O1 C1 C2 H1 239.6 240.2
C2 C1 O1 C11 150.7 179.9
O5 C1 C2 H1 120.5 120.0
C2 C1 O5 C5 298.8 292.4
C3 C2 C1 O2 239.4 240.1
C3 C2 C1 H2 119.8 119.8
C1 C2 C3 C4 304.7 306.3
C1 C2 C3 H3 69.9 186.5
C1 C2 C3 H32 179.4 65.9
O2 C2 C1 H2 240.4 239.8
C1 C2 O2 HO2 180.0 60.4
C2 C1 O1 O5 239.5 239.7
C2 C1 O1 H1 119.0 119.7
O1 C1 C2 C3 176.8 181.5
O1 C1 C2 O2 297.4 301.4
O1 C1 C2 H2 57.0 61.6
O5 C1 O1 H1 239.5 240.1
O1 C1 O5 C5 178.2 172.3
C1 O1 C11 C12 170.6 180.0
C1 O1 C11 H111 295.8 59.9
C1 O1 C11 H112 45.3 299.9
C2 C1 O5 O1 120.6 120.1
C2 C1 O5 H1 241.0 240.0
O5 C1 C2 C3 57.6 61.3
O5 C1 C2 O2 178.2 181.2
O5 C1 C2 H2 297.8 301.4
O1 C1 O5 H1 120.4 119.9
O5 C1 O1 C11 271.2 300.2
C4 C5 O5 C1 60.8 67.5
C6 C5 O5 C1 183.2 187.6
C1 O5 C5 H5 303.0 307.5
C2 C1 H1 O1 239.5 240.2
C2 C1 H1 O5 120.4 120.3
H1 C1 C2 C3 297.2 301.2
H1 C1 C2 O2 57.8 61.2
H1 C1 C2 H2 177.3 181.4
O1 C1 H1 O5 240.9 240.0
H1 C1 O1 C11 31.7 60.1
H1 C1 O5 C5 57.8 52.4
C3 C2 C1 O1 176.8 181.5
C3 C2 C1 O5 57.6 61.3
C3 C2 C1 H1 297.2 301.2
C1 C2 C3 O2 120.7 119.9
C1 C2 C3 H2 240.3 240.1
O2 C2 C3 H2 119.6 120.1
C3 C2 O2 HO2 300.4 180.0
C4 C3 C2 H3 234.7 119.7
C4 C3 C2 H32 125.3 240.3
C2 C3 C4 C5 55.4 53.7
C2 C3 C4 O4 295.2 293.8
C2 C3 C4 H4 175.2 173.6
H3 C3 C2 H32 250.5 120.6
O2 C2 C1 O1 297.4 301.4
O2 C2 C1 O5 178.2 181.2
O2 C2 C1 H1 57.8 61.2
C1 C2 O2 C3 239.5 240.4
C1 C2 O2 H2 119.7 120.3
C3 C2 O2 H2 240.2 239.9
O2 C2 C3 C4 184.0 186.3
O2 C2 C3 H3 309.3 66.6
O2 C2 C3 H32 58.8 306.0
H2 C2 C1 O1 57.0 61.6
H2 C2 C1 O5 297.8 301.4
H2 C2 C1 H1 177.3 181.4
C1 C2 H2 C3 119.9 119.6
C1 C2 H2 O2 239.9 239.7
C3 C2 H2 O2 120.0 120.2
H2 C2 C3 C4 64.4 66.2
H2 C2 C3 H3 189.7 306.4
H2 C2 C3 H32 299.2 185.9
H2 C2 O2 HO2 60.2 300.1
C4 C3 C2 O2 184.0 186.3
C4 C3 C2 H2 64.4 66.2
C2 C3 C4 H3 125.3 240.2
C2 C3 C4 H32 234.8 119.7
H3 C3 C4 H32 109.5 239.5
C5 C4 C3 O4 120.2 119.9
C5 C4 C3 H4 240.3 240.1
C3 C4 C5 C6 183.7 178.7
C3 C4 C5 O5 302.8 298.8
C3 C4 C5 H5 64.1 58.8
O4 C4 C3 H4 120.1 120.2
C3 C4 O4 HO4 180.0 299.6
H3 C3 C2 O2 309.3 66.6
H3 C3 C2 H2 189.7 306.4
C2 C3 H3 C4 236.2 119.1
C2 C3 H3 H32 118.1 239.5
C4 C3 H3 H32 241.9 120.4
H3 C3 C4 C5 290.1 173.5
H3 C3 C4 O4 169.9 53.5
H3 C3 C4 H4 49.9 293.4
H32 C3 C2 O2 58.8 306.0
H32 C3 C2 H2 299.2 185.9
C2 C3 H32 C4 123.7 240.9
C2 C3 H32 H3 241.9 120.5
C4 C3 H32 H3 118.1 239.6
H32 C3 C4 C5 180.7 294.0
H32 C3 C4 O4 60.5 174.1
H32 C3 C4 H4 300.4 53.9
C1 O5 C5 C4 60.8 67.5
C5 C4 C3 H3 290.1 173.5
C5 C4 C3 H32 180.7 294.0
C3 C4 C5 O4 239.9 240.0
C3 C4 C5 H4 119.8 119.8
O4 C4 C5 H4 239.9 239.8
C5 C4 O4 HO4 59.6 179.9
C6 C5 C4 O5 241.0 239.9
C6 C5 C4 H5 119.7 119.9
C4 C5 C6 O6 197.6 180.3
C4 C5 C6 H61 322.9 300.3
C4 C5 C6 H62 72.4 60.3
O5 C5 C4 H5 238.7 240.0
O4 C4 C3 H3 169.9 53.5
O4 C4 C3 H32 60.5 174.1
C3 C4 O4 C5 120.5 119.6
C3 C4 O4 H4 240.2 239.8
C5 C4 O4 H4 119.7 120.2
O4 C4 C5 C6 303.8 298.6
O4 C4 C5 O5 62.9 58.8
O4 C4 C5 H5 184.2 178.8
H4 C4 C3 H3 49.9 293.4
H4 C4 C3 H32 300.4 53.9
C3 C4 H4 C5 239.8 240.4
C3 C4 H4 O4 119.8 120.2
C5 C4 H4 O4 240.1 239.8
H4 C4 C5 C6 63.9 58.8
H4 C4 C5 O5 183.0 179.0
H4 C4 C5 H5 304.2 299.0
H4 C4 O4 HO4 299.8 59.7
C1 O5 C5 C6 183.2 187.6
C6 C5 C4 O4 303.8 298.6
C6 C5 C4 H4 63.9 58.8
C4 C5 C6 O5 120.8 120.4
C4 C5 C6 H5 242.2 240.2
O5 C5 C6 H5 121.4 119.8
O6 C6 C5 H61 234.7 240.0
O6 C6 C5 H62 125.3 120.0
C5 C6 O6 HO6 180.0 180.0
H61 C6 C5 H62 250.6 240.0
C5 O5 C1 H1 57.8 52.4
O5 C5 C4 O4 62.9 58.8
O5 C5 C4 H4 183.0 179.0
C4 C5 O5 C6 237.6 239.9
C4 C5 O5 H5 117.8 120.0
C6 C5 O5 H5 240.2 240.1
O5 C5 C6 O6 76.8 59.9
O5 C5 C6 H61 202.1 179.9
O5 C5 C6 H62 311.6 300.0
H5 C5 C4 O4 184.2 178.8
H5 C5 C4 H4 304.2 299.0
C4 C5 H5 C6 121.7 119.8
C4 C5 H5 O5 240.0 239.7
C6 C5 H5 O5 118.3 119.9
H5 C5 C6 O6 315.5 300.1
H5 C5 C6 H61 80.8 60.1
H5 C5 C6 H62 190.2 180.2
O6 C6 C5 O5 76.8 59.9
O6 C6 C5 H5 315.5 300.1
C5 C6 O6 H61 125.3 120.0
C5 C6 O6 H62 234.8 240.0
H61 C6 O6 H62 109.5 120.0
H61 C6 C5 O5 202.1 179.9
H61 C6 C5 H5 80.8 60.1
C5 C6 H61 O6 234.9 240.0
C5 C6 H61 H62 117.4 120.0
O6 C6 H61 H62 242.5 240.0
H61 C6 O6 HO6 54.8 59.9
H62 C6 C5 O5 311.6 300.0
H62 C6 C5 H5 190.2 180.2
C5 C6 H62 O6 125.1 120.0
C5 C6 H62 H61 242.6 240.0
O6 C6 H62 H61 117.5 120.0
H62 C6 O6 HO6 305.3 299.9
C11 O1 C1 O5 271.2 300.2
C11 O1 C1 H1 31.7 60.1
C12 C11 O1 H111 234.8 120.1
C12 C11 O1 H112 125.3 240.1
O1 C11 C12 C13 193.0 180.0
O1 C11 C12 H121 318.3 59.8
O1 C11 C12 H122 67.7 299.9
H111 C11 O1 H112 250.5 120.0
HO2 O2 C2 H2 60.2 300.1
HO4 O4 C4 H4 299.8 59.7
HO6 O6 C6 H61 54.8 59.9
HO6 O6 C6 H62 305.3 299.9
O1 C11 C12 H111 125.2 239.9
O1 C11 C12 H112 234.8 119.9
H111 C11 C12 H112 109.5 240.0
C13 C12 C11 H121 234.7 120.1
C13 C12 C11 H122 125.3 240.1
C11 C12 C13 C14 51.7 179.9
C11 C12 C13 H131 176.9 59.9
C11 C12 C13 H132 286.4 299.9
H121 C12 C11 H122 250.6 119.9
O1 C11 H111 C12 243.6 120.1
O1 C11 H111 H112 121.8 240.0
C12 C11 H111 H112 238.2 119.9
H111 C11 C12 C13 67.8 300.1
H111 C11 C12 H121 193.1 180.0
H111 C11 C12 H122 302.5 60.0
O1 C11 H112 C12 116.4 240.1
O1 C11 H112 H111 238.2 120.0
C12 C11 H112 H111 121.8 240.0
H112 C11 C12 C13 318.2 60.1
H112 C11 C12 H121 83.6 299.9
H112 C11 C12 H122 192.9 180.0
C13 C12 C11 H111 67.8 300.1
C13 C12 C11 H112 318.2 60.1
C11 C12 C13 H121 125.3 239.9
C11 C12 C13 H122 234.7 119.9
H121 C12 C13 H122 109.4 240.0
C14 C13 C12 H131 234.8 120.1
C14 C13 C12 H132 125.3 240.0
C12 C13 C14 C15 162.4 180.0
C12 C13 C14 H141 287.7 59.9
C12 C13 C14 H142 37.2 300.0
H131 C13 C12 H132 250.5 120.0
H121 C12 C11 H111 193.1 180.0
H121 C12 C11 H112 83.6 299.9
C11 C12 H121 C13 231.1 120.1
C11 C12 H121 H122 115.5 240.1
C13 C12 H121 H122 244.4 120.0
H121 C12 C13 C14 286.4 300.1
H121 C12 C13 H131 51.6 180.0
H121 C12 C13 H132 161.1 60.0
H122 C12 C11 H111 302.5 60.0
H122 C12 C11 H112 192.9 180.0
C11 C12 H122 C13 128.9 240.0
C11 C12 H122 H121 244.5 120.0
C13 C12 H122 H121 115.6 240.0
H122 C12 C13 C14 176.9 60.0
H122 C12 C13 H131 302.2 300.0
H122 C12 C13 H132 51.6 180.0
C14 C13 C12 H121 286.4 300.1
C14 C13 C12 H122 176.9 60.0
C12 C13 C14 H131 125.2 239.9
C12 C13 C14 H132 234.8 120.0
H131 C13 C14 H132 109.5 240.1
C15 C14 C13 H141 234.7 120.1
C15 C14 C13 H142 125.3 239.9
C13 C14 C15 C16 258.7 180.0
C13 C14 C15 H151 23.9 60.0
C13 C14 C15 H152 133.4 300.0
H141 C14 C13 H142 250.6 119.9
H131 C13 C12 H121 51.6 180.0
H131 C13 C12 H122 302.2 300.0
C12 C13 H131 C14 232.1 120.1
C12 C13 H131 H132 116.0 240.0
C14 C13 H131 H132 243.9 119.9
H131 C13 C14 C15 37.2 300.1
H131 C13 C14 H141 162.5 180.0
H131 C13 C14 H142 271.9 60.1
H132 C13 C12 H121 161.1 60.0
H132 C13 C12 H122 51.6 180.0
C12 C13 H132 C14 127.9 239.9
C12 C13 H132 H131 244.0 120.0
C14 C13 H132 H131 116.1 240.1
H132 C13 C14 C15 287.7 60.0
H132 C13 C14 H141 53.0 299.9
H132 C13 C14 H142 162.4 180.1
C15 C14 C13 H131 37.2 300.1
C15 C14 C13 H132 287.7 60.0
C13 C14 C15 H141 125.3 240.0
C13 C14 C15 H142 234.8 120.0
H141 C14 C15 H142 109.5 240.1
C16 C15 C14 H151 234.8 120.1
C16 C15 C14 H152 125.3 240.0
C14 C15 C16 H161 179.9 180.0
C14 C15 C16 H162 305.3 300.0
C14 C15 C16 H163 54.7 60.0
H151 C15 C14 H152 250.5 120.0
H141 C14 C13 H131 162.5 180.0
H141 C14 C13 H132 53.0 299.9
C13 C14 H141 C15 227.5 120.1
C13 C14 H141 H142 113.7 240.1
C15 C14 H141 H142 246.2 120.0
H141 C14 C15 C16 133.4 300.1
H141 C14 C15 H151 258.6 180.0
H141 C14 C15 H152 8.1 60.0
H142 C14 C13 H131 271.9 60.1
H142 C14 C13 H132 162.4 180.1
C13 C14 H142 C15 132.5 239.9
C13 C14 H142 H141 246.3 119.9
C15 C14 H142 H141 113.8 240.0
H142 C14 C15 C16 23.9 60.0
H142 C14 C15 H151 149.1 299.9
H142 C14 C15 H152 258.6 180.0
C16 C15 C14 H141 133.4 300.1
C16 C15 C14 H142 23.9 60.0
C14 C15 C16 H151 125.2 240.0
C14 C15 C16 H152 234.7 120.0
H151 C15 C16 H152 109.5 240.0
H161 C16 C15 H162 234.6 240.1
H161 C16 C15 H163 125.2 120.1
H162 C16 C15 H163 250.6 240.0
H151 C15 C14 H141 258.6 180.0
H151 C15 C14 H142 149.1 299.9
C14 C15 H151 C16 231.7 120.1
C14 C15 H151 H152 115.8 240.0
C16 C15 H151 H152 244.1 120.0
H151 C15 C16 H161 54.7 300.1
H151 C15 C16 H162 180.1 60.0
H151 C15 C16 H163 289.5 180.0
H152 C15 C14 H141 8.1 60.0
H152 C15 C14 H142 258.6 180.0
C14 C15 H152 C16 128.3 240.0
C14 C15 H152 H151 244.2 120.0
C16 C15 H152 H151 115.9 240.0
H152 C15 C16 H161 305.2 60.1
H152 C15 C16 H162 70.6 180.0
H152 C15 C16 H163 180.0 300.0
H161 C16 C15 H151 54.7 300.1
H161 C16 C15 H152 305.2 60.1
C15 C16 H161 H162 125.3 119.9
C15 C16 H161 H163 234.7 239.9
H162 C16 H161 H163 109.4 120.0
H162 C16 C15 H151 180.1 60.0
H162 C16 C15 H152 70.6 180.0
C15 C16 H162 H161 231.7 240.0
C15 C16 H162 H163 115.8 120.0
H161 C16 H162 H163 244.2 240.0
H163 C16 C15 H151 289.5 180.0
H163 C16 C15 H152 180.0 300.0
C15 C16 H163 H161 128.3 120.1
C15 C16 H163 H162 244.2 240.0
H161 C16 H163 H162 115.9 120.0