PDB Chemical Component DLE
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DLE
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.489 |
1.469 |
| N |
H |
1.019 |
1.009 |
| N |
H2 |
1.020 |
1.009 |
| CA |
CB |
1.530 |
1.528 |
| CA |
C |
1.542 |
1.506 |
| CA |
HA |
1.115 |
1.090 |
| CB |
CG |
1.519 |
1.529 |
| CB |
HB2 |
1.115 |
1.090 |
| CB |
HB3 |
1.114 |
1.090 |
| CG |
CD1 |
1.539 |
1.529 |
| CG |
CD2 |
1.524 |
1.529 |
| CG |
HG |
1.114 |
1.090 |
| CD1 |
HD11 |
1.115 |
1.090 |
| CD1 |
HD12 |
1.115 |
1.090 |
| CD1 |
HD13 |
1.115 |
1.090 |
| CD2 |
HD21 |
1.116 |
1.089 |
| CD2 |
HD22 |
1.115 |
1.090 |
| CD2 |
HD23 |
1.115 |
1.090 |
| C |
O |
1.234 |
1.208 |
| C |
OXT |
1.326 |
1.343 |
| OXT |
HXT |
0.950 |
0.966 |
Bond Angles for DLE
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
111.5 |
106.7 |
| CA |
N |
H2 |
111.5 |
106.7 |
| N |
CA |
CB |
111.5 |
109.5 |
| N |
CA |
C |
111.6 |
109.4 |
| N |
CA |
HA |
107.3 |
109.4 |
| H |
N |
H2 |
111.5 |
106.7 |
| CB |
CA |
C |
111.7 |
109.6 |
| CB |
CA |
HA |
107.3 |
109.5 |
| CA |
CB |
CG |
117.0 |
109.5 |
| CA |
CB |
HB2 |
109.5 |
109.5 |
| CA |
CB |
HB3 |
109.5 |
109.4 |
| C |
CA |
HA |
107.2 |
109.5 |
| CA |
C |
O |
121.5 |
120.1 |
| CA |
C |
OXT |
116.6 |
120.0 |
| CG |
CB |
HB2 |
109.5 |
109.5 |
| CG |
CB |
HB3 |
109.5 |
109.4 |
| CB |
CG |
CD1 |
112.8 |
109.5 |
| CB |
CG |
CD2 |
108.3 |
109.5 |
| CB |
CG |
HG |
108.3 |
109.4 |
| HB2 |
CB |
HB3 |
100.7 |
109.4 |
| CD1 |
CG |
CD2 |
110.2 |
109.5 |
| CD1 |
CG |
HG |
106.3 |
109.5 |
| CG |
CD1 |
HD11 |
112.9 |
109.5 |
| CG |
CD1 |
HD12 |
111.0 |
109.5 |
| CG |
CD1 |
HD13 |
111.0 |
109.4 |
| CD2 |
CG |
HG |
111.0 |
109.4 |
| CG |
CD2 |
HD21 |
108.2 |
109.5 |
| CG |
CD2 |
HD22 |
112.6 |
109.5 |
| CG |
CD2 |
HD23 |
112.7 |
109.5 |
| HD11 |
CD1 |
HD12 |
111.0 |
109.4 |
| HD11 |
CD1 |
HD13 |
110.9 |
109.5 |
| HD12 |
CD1 |
HD13 |
99.3 |
109.5 |
| HD21 |
CD2 |
HD22 |
112.6 |
109.4 |
| HD21 |
CD2 |
HD23 |
112.7 |
109.5 |
| HD22 |
CD2 |
HD23 |
97.9 |
109.4 |
| O |
C |
OXT |
121.9 |
119.9 |
| C |
OXT |
HXT |
116.6 |
120.1 |
Torsion Angles for DLE
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
125.4 |
113.8 |
| CB |
CA |
N |
C |
125.6 |
120.1 |
| CB |
CA |
N |
HA |
242.8 |
240.0 |
| N |
CA |
CB |
CG |
288.7 |
65.0 |
| N |
CA |
CB |
HB2 |
53.9 |
304.8 |
| N |
CA |
CB |
HB3 |
163.4 |
184.9 |
| C |
CA |
N |
HA |
117.2 |
120.0 |
| N |
CA |
C |
O |
58.8 |
30.1 |
| N |
CA |
C |
OXT |
238.4 |
210.0 |
| CA |
N |
H |
H2 |
234.7 |
246.3 |
| H |
N |
CA |
CB |
180.0 |
173.8 |
| H |
N |
CA |
C |
54.4 |
53.7 |
| H |
N |
CA |
HA |
297.2 |
293.8 |
| CA |
N |
H2 |
H |
125.3 |
113.7 |
| H2 |
N |
CA |
CB |
54.7 |
60.0 |
| H2 |
N |
CA |
C |
289.0 |
300.0 |
| H2 |
N |
CA |
HA |
171.9 |
180.0 |
| CB |
CA |
N |
H |
180.0 |
173.8 |
| CB |
CA |
N |
H2 |
54.7 |
60.0 |
| N |
CA |
CB |
C |
234.4 |
240.0 |
| N |
CA |
CB |
HA |
117.2 |
119.9 |
| C |
CA |
CB |
HA |
242.8 |
239.9 |
| CB |
CA |
C |
O |
293.3 |
270.1 |
| CB |
CA |
C |
OXT |
112.9 |
90.0 |
| CG |
CB |
CA |
HB2 |
234.8 |
120.1 |
| CG |
CB |
CA |
HB3 |
125.3 |
240.0 |
| CA |
CB |
CG |
CD1 |
129.2 |
65.8 |
| CA |
CB |
CG |
CD2 |
251.4 |
185.9 |
| CA |
CB |
CG |
HG |
11.9 |
305.8 |
| HB2 |
CB |
CA |
HB3 |
250.5 |
119.9 |
| C |
CA |
N |
H |
54.4 |
53.7 |
| C |
CA |
N |
H2 |
289.0 |
300.0 |
| N |
CA |
C |
CB |
125.5 |
120.0 |
| N |
CA |
C |
HA |
242.8 |
240.1 |
| CB |
CA |
C |
HA |
117.2 |
120.1 |
| C |
CA |
CB |
CG |
54.3 |
185.0 |
| C |
CA |
CB |
HB2 |
179.5 |
64.8 |
| C |
CA |
CB |
HB3 |
289.0 |
304.9 |
| O |
C |
CA |
OXT |
180.4 |
180.1 |
| CA |
C |
OXT |
HXT |
180.0 |
180.1 |
| HA |
CA |
N |
H |
297.2 |
293.8 |
| HA |
CA |
N |
H2 |
171.9 |
180.0 |
| N |
CA |
HA |
CB |
240.1 |
240.1 |
| N |
CA |
HA |
C |
120.0 |
119.9 |
| CB |
CA |
HA |
C |
239.9 |
239.8 |
| HA |
CA |
CB |
CG |
171.5 |
305.1 |
| HA |
CA |
CB |
HB2 |
296.7 |
184.9 |
| HA |
CA |
CB |
HB3 |
46.2 |
65.0 |
| HA |
CA |
C |
O |
176.1 |
150.0 |
| HA |
CA |
C |
OXT |
355.7 |
329.9 |
| CG |
CB |
CA |
C |
54.3 |
185.0 |
| CG |
CB |
CA |
HA |
171.5 |
305.1 |
| CA |
CB |
CG |
HB2 |
125.2 |
239.9 |
| CA |
CB |
CG |
HB3 |
234.7 |
120.0 |
| HB2 |
CB |
CG |
HB3 |
109.5 |
240.1 |
| CD1 |
CG |
CB |
CD2 |
237.8 |
239.9 |
| CD1 |
CG |
CB |
HG |
117.4 |
120.0 |
| CB |
CG |
CD1 |
HD11 |
180.0 |
180.1 |
| CB |
CG |
CD1 |
HD12 |
305.3 |
300.1 |
| CB |
CG |
CD1 |
HD13 |
54.7 |
60.0 |
| CD2 |
CG |
CB |
HG |
239.6 |
240.1 |
| CB |
CG |
CD2 |
HD21 |
180.0 |
295.0 |
| CB |
CG |
CD2 |
HD22 |
305.2 |
55.0 |
| CB |
CG |
CD2 |
HD23 |
54.8 |
175.0 |
| HB2 |
CB |
CA |
C |
179.5 |
64.8 |
| HB2 |
CB |
CA |
HA |
296.7 |
184.9 |
| CA |
CB |
HB2 |
CG |
230.6 |
120.1 |
| CA |
CB |
HB2 |
HB3 |
115.3 |
240.1 |
| CG |
CB |
HB2 |
HB3 |
244.7 |
120.0 |
| HB2 |
CB |
CG |
CD1 |
4.0 |
185.9 |
| HB2 |
CB |
CG |
CD2 |
126.2 |
305.9 |
| HB2 |
CB |
CG |
HG |
246.6 |
65.9 |
| HB3 |
CB |
CA |
C |
289.0 |
304.9 |
| HB3 |
CB |
CA |
HA |
46.2 |
65.0 |
| CA |
CB |
HB3 |
CG |
129.5 |
240.0 |
| CA |
CB |
HB3 |
HB2 |
244.7 |
119.9 |
| CG |
CB |
HB3 |
HB2 |
115.2 |
240.0 |
| HB3 |
CB |
CG |
CD1 |
254.5 |
305.8 |
| HB3 |
CB |
CG |
CD2 |
16.7 |
65.9 |
| HB3 |
CB |
CG |
HG |
137.2 |
185.8 |
| CD1 |
CG |
CB |
HB2 |
4.0 |
185.9 |
| CD1 |
CG |
CB |
HB3 |
254.5 |
305.8 |
| CB |
CG |
CD1 |
CD2 |
121.1 |
120.1 |
| CB |
CG |
CD1 |
HG |
241.5 |
240.1 |
| CD2 |
CG |
CD1 |
HG |
120.3 |
120.0 |
| CD1 |
CG |
CD2 |
HD21 |
303.9 |
55.1 |
| CD1 |
CG |
CD2 |
HD22 |
69.0 |
175.0 |
| CD1 |
CG |
CD2 |
HD23 |
178.6 |
295.1 |
| HD11 |
CD1 |
CG |
HD12 |
234.7 |
240.0 |
| HD11 |
CD1 |
CG |
HD13 |
125.2 |
120.1 |
| HD12 |
CD1 |
CG |
HD13 |
250.5 |
240.0 |
| CD2 |
CG |
CB |
HB2 |
126.2 |
305.9 |
| CD2 |
CG |
CB |
HB3 |
16.7 |
65.9 |
| CB |
CG |
CD2 |
CD1 |
236.2 |
239.9 |
| CB |
CG |
CD2 |
HG |
118.7 |
119.9 |
| CD1 |
CG |
CD2 |
HG |
242.5 |
240.0 |
| CD2 |
CG |
CD1 |
HD11 |
58.8 |
60.0 |
| CD2 |
CG |
CD1 |
HD12 |
184.1 |
180.0 |
| CD2 |
CG |
CD1 |
HD13 |
293.6 |
299.9 |
| HD21 |
CD2 |
CG |
HD22 |
234.8 |
240.1 |
| HD21 |
CD2 |
CG |
HD23 |
125.3 |
120.0 |
| HD22 |
CD2 |
CG |
HD23 |
250.5 |
240.0 |
| HG |
CG |
CB |
HB2 |
246.6 |
65.9 |
| HG |
CG |
CB |
HB3 |
137.2 |
185.8 |
| CB |
CG |
HG |
CD1 |
121.5 |
120.0 |
| CB |
CG |
HG |
CD2 |
241.3 |
240.0 |
| CD1 |
CG |
HG |
CD2 |
119.8 |
120.0 |
| HG |
CG |
CD1 |
HD11 |
298.5 |
300.0 |
| HG |
CG |
CD1 |
HD12 |
63.8 |
60.0 |
| HG |
CG |
CD1 |
HD13 |
173.2 |
180.0 |
| HG |
CG |
CD2 |
HD21 |
61.3 |
175.1 |
| HG |
CG |
CD2 |
HD22 |
186.5 |
295.1 |
| HG |
CG |
CD2 |
HD23 |
296.0 |
55.1 |
| HD11 |
CD1 |
CG |
CD2 |
58.8 |
60.0 |
| HD11 |
CD1 |
CG |
HG |
298.5 |
300.0 |
| CG |
CD1 |
HD11 |
HD12 |
125.3 |
120.0 |
| CG |
CD1 |
HD11 |
HD13 |
234.7 |
240.0 |
| HD12 |
CD1 |
HD11 |
HD13 |
109.3 |
120.0 |
| HD12 |
CD1 |
CG |
CD2 |
184.1 |
180.0 |
| HD12 |
CD1 |
CG |
HG |
63.8 |
60.0 |
| CG |
CD1 |
HD12 |
HD11 |
233.6 |
240.0 |
| CG |
CD1 |
HD12 |
HD13 |
116.9 |
119.9 |
| HD11 |
CD1 |
HD12 |
HD13 |
243.3 |
239.9 |
| HD13 |
CD1 |
CG |
CD2 |
293.6 |
299.9 |
| HD13 |
CD1 |
CG |
HG |
173.2 |
180.0 |
| CG |
CD1 |
HD13 |
HD11 |
126.3 |
120.0 |
| CG |
CD1 |
HD13 |
HD12 |
243.1 |
240.0 |
| HD11 |
CD1 |
HD13 |
HD12 |
116.8 |
120.0 |
| HD21 |
CD2 |
CG |
HG |
61.3 |
175.1 |
| CG |
CD2 |
HD21 |
HD22 |
125.2 |
120.0 |
| CG |
CD2 |
HD21 |
HD23 |
234.7 |
239.9 |
| HD22 |
CD2 |
HD21 |
HD23 |
109.6 |
119.9 |
| HD22 |
CD2 |
CG |
HG |
186.5 |
295.1 |
| CG |
CD2 |
HD22 |
HD21 |
237.2 |
240.0 |
| CG |
CD2 |
HD22 |
HD23 |
118.6 |
120.1 |
| HD21 |
CD2 |
HD22 |
HD23 |
241.4 |
240.1 |
| HD23 |
CD2 |
CG |
HG |
296.0 |
55.1 |
| CG |
CD2 |
HD23 |
HD21 |
122.8 |
120.1 |
| CG |
CD2 |
HD23 |
HD22 |
241.4 |
239.9 |
| HD21 |
CD2 |
HD23 |
HD22 |
118.6 |
119.9 |
| O |
C |
CA |
HA |
176.1 |
150.0 |
| CA |
C |
O |
OXT |
179.6 |
179.9 |
| O |
C |
OXT |
HXT |
359.6 |
359.9 |
| OXT |
C |
CA |
HA |
355.7 |
329.9 |
| CA |
C |
OXT |
O |
180.4 |
180.1 |