PDB Chemical Component DKG
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DKG
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C7 |
C4 |
1.506 |
1.507 |
| C4 |
C3 |
1.390 |
1.386 |
| C4 |
C5 |
1.383 |
1.389 |
| C3 |
N2 |
1.339 |
1.320 |
| N2 |
N1 |
1.397 |
1.283 |
| C5 |
C6 |
1.393 |
1.385 |
| N1 |
C6 |
1.340 |
1.320 |
| C7 |
H1 |
1.100 |
1.090 |
| C7 |
H2 |
1.100 |
1.090 |
| C7 |
H3 |
1.100 |
1.089 |
| C5 |
H4 |
1.080 |
1.081 |
| C3 |
H5 |
1.080 |
1.080 |
| C6 |
H6 |
1.080 |
1.081 |
Bond Angles for DKG
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C7 |
C4 |
C3 |
119.0 |
121.0 |
| C7 |
C4 |
C5 |
121.7 |
121.1 |
| C4 |
C7 |
H1 |
109.5 |
109.4 |
| C4 |
C7 |
H2 |
109.5 |
109.4 |
| C4 |
C7 |
H3 |
109.5 |
109.5 |
| C5 |
C4 |
C3 |
119.3 |
118.0 |
| C4 |
C3 |
N2 |
121.2 |
119.8 |
| C4 |
C3 |
H5 |
119.4 |
120.1 |
| C4 |
C5 |
C6 |
118.9 |
118.0 |
| C4 |
C5 |
H4 |
120.5 |
121.0 |
| C3 |
N2 |
N1 |
119.4 |
122.2 |
| N2 |
C3 |
H5 |
119.4 |
120.1 |
| N2 |
N1 |
C6 |
120.5 |
122.1 |
| C5 |
C6 |
N1 |
120.7 |
119.9 |
| C6 |
C5 |
H4 |
120.6 |
121.0 |
| C5 |
C6 |
H6 |
119.6 |
120.1 |
| N1 |
C6 |
H6 |
119.7 |
120.0 |
| H1 |
C7 |
H2 |
109.5 |
109.4 |
| H1 |
C7 |
H3 |
109.5 |
109.5 |
| H2 |
C7 |
H3 |
109.4 |
109.5 |
Torsion Angles for DKG
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5 |
C4 |
C7 |
C3 |
180.6 |
180.2 |
| C7 |
C4 |
C3 |
N2 |
180.4 |
180.0 |
| C7 |
C4 |
C3 |
H5 |
0.4 |
359.9 |
| C7 |
C4 |
C5 |
C6 |
179.8 |
180.0 |
| C7 |
C4 |
C5 |
H4 |
359.8 |
0.1 |
| H1 |
C7 |
C4 |
H2 |
240.0 |
240.1 |
| H1 |
C7 |
C4 |
H3 |
120.0 |
120.0 |
| H2 |
C7 |
C4 |
H3 |
240.0 |
240.0 |
| C7 |
C4 |
C3 |
C5 |
180.6 |
180.2 |
| C3 |
C4 |
C7 |
H1 |
89.7 |
90.1 |
| C3 |
C4 |
C7 |
H2 |
209.8 |
210.0 |
| C3 |
C4 |
C7 |
H3 |
329.7 |
330.1 |
| C3 |
C4 |
C5 |
C6 |
0.3 |
0.2 |
| C3 |
C4 |
C5 |
H4 |
180.3 |
180.3 |
| C4 |
C3 |
N2 |
N1 |
359.6 |
359.9 |
| N2 |
C3 |
C4 |
H5 |
180.0 |
180.1 |
| C7 |
C4 |
C5 |
C3 |
179.4 |
179.8 |
| C5 |
C4 |
C7 |
H1 |
270.3 |
270.3 |
| C5 |
C4 |
C7 |
H2 |
30.3 |
30.2 |
| C5 |
C4 |
C7 |
H3 |
150.3 |
150.2 |
| C5 |
C4 |
C3 |
N2 |
359.9 |
359.8 |
| C5 |
C4 |
C3 |
H5 |
179.8 |
179.7 |
| C4 |
C5 |
C6 |
N1 |
0.0 |
0.1 |
| C6 |
C5 |
C4 |
H4 |
180.0 |
179.9 |
| C4 |
C5 |
C6 |
H6 |
180.0 |
180.0 |
| C4 |
C3 |
N2 |
H5 |
180.0 |
179.9 |
| C3 |
N2 |
N1 |
C6 |
0.8 |
0.3 |
| N1 |
N2 |
C3 |
H5 |
179.6 |
180.0 |
| C5 |
C6 |
N1 |
N2 |
359.4 |
359.7 |
| N2 |
N1 |
C6 |
H6 |
179.4 |
179.8 |
| C6 |
C5 |
C4 |
C3 |
0.3 |
0.2 |
| C4 |
C5 |
C6 |
H4 |
180.0 |
180.1 |
| N2 |
N1 |
C6 |
C5 |
359.4 |
359.7 |
| N1 |
C6 |
C5 |
H6 |
180.0 |
180.1 |
| N1 |
C6 |
C5 |
H4 |
180.0 |
180.0 |
| C5 |
C6 |
N1 |
H6 |
180.0 |
179.9 |
| H1 |
C7 |
C4 |
C3 |
89.7 |
90.1 |
| H1 |
C7 |
C4 |
C5 |
270.3 |
270.3 |
| C4 |
C7 |
H1 |
H2 |
120.0 |
119.9 |
| C4 |
C7 |
H1 |
H3 |
240.0 |
240.0 |
| H2 |
C7 |
H1 |
H3 |
120.0 |
120.1 |
| H2 |
C7 |
C4 |
C3 |
209.8 |
210.0 |
| H2 |
C7 |
C4 |
C5 |
30.3 |
30.2 |
| C4 |
C7 |
H2 |
H1 |
240.0 |
240.1 |
| C4 |
C7 |
H2 |
H3 |
120.0 |
120.0 |
| H1 |
C7 |
H2 |
H3 |
240.0 |
239.9 |
| H3 |
C7 |
C4 |
C3 |
329.7 |
330.1 |
| H3 |
C7 |
C4 |
C5 |
150.3 |
150.2 |
| C4 |
C7 |
H3 |
H1 |
120.0 |
120.0 |
| C4 |
C7 |
H3 |
H2 |
240.0 |
240.0 |
| H1 |
C7 |
H3 |
H2 |
120.0 |
120.0 |
| H4 |
C5 |
C4 |
C3 |
180.3 |
180.3 |
| C4 |
C5 |
H4 |
C6 |
180.0 |
179.9 |
| H4 |
C5 |
C6 |
N1 |
180.0 |
180.0 |
| H4 |
C5 |
C6 |
H6 |
0.1 |
359.9 |
| C4 |
C3 |
H5 |
N2 |
180.0 |
180.1 |
| H5 |
C3 |
N2 |
N1 |
179.6 |
180.0 |
| C5 |
C6 |
H6 |
N1 |
180.0 |
180.1 |
| H6 |
C6 |
C5 |
H4 |
0.1 |
359.9 |