PDB Chemical Component DKA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DKA
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
O1 |
1.253 |
1.208 |
C1 |
C2 |
1.529 |
1.506 |
C1 |
O2 |
1.255 |
1.343 |
C2 |
C3 |
1.531 |
1.531 |
C2 |
H21 |
1.100 |
1.090 |
C2 |
H22 |
1.100 |
1.090 |
C3 |
C4 |
1.520 |
1.530 |
C3 |
H31 |
1.100 |
1.089 |
C3 |
H32 |
1.100 |
1.091 |
C4 |
C5 |
1.522 |
1.530 |
C4 |
H41 |
1.100 |
1.090 |
C4 |
H42 |
1.100 |
1.091 |
C5 |
C6 |
1.523 |
1.530 |
C5 |
H51 |
1.100 |
1.090 |
C5 |
H52 |
1.100 |
1.090 |
C6 |
C7 |
1.528 |
1.530 |
C6 |
H61 |
1.100 |
1.090 |
C6 |
H62 |
1.100 |
1.089 |
C7 |
C8 |
1.525 |
1.530 |
C7 |
H71 |
1.099 |
1.089 |
C7 |
H72 |
1.100 |
1.090 |
C8 |
C9 |
1.520 |
1.531 |
C8 |
H81 |
1.101 |
1.090 |
C8 |
H82 |
1.100 |
1.091 |
C9 |
C10 |
1.513 |
1.530 |
C9 |
H91 |
1.100 |
1.089 |
C9 |
H92 |
1.100 |
1.090 |
C10 |
H101 |
1.100 |
1.089 |
C10 |
H102 |
1.100 |
1.091 |
C10 |
H103 |
1.100 |
1.090 |
O2 |
HO2 |
0.950 |
0.967 |
Bond Angles for DKA
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1 |
C2 |
118.5 |
120.0 |
O1 |
C1 |
O2 |
123.1 |
120.0 |
C2 |
C1 |
O2 |
118.4 |
120.0 |
C1 |
C2 |
C3 |
110.4 |
109.5 |
C1 |
C2 |
H21 |
109.1 |
109.5 |
C1 |
C2 |
H22 |
109.1 |
109.5 |
C1 |
O2 |
HO2 |
109.5 |
117.0 |
C3 |
C2 |
H21 |
109.1 |
109.4 |
C3 |
C2 |
H22 |
109.2 |
109.5 |
C2 |
C3 |
C4 |
104.6 |
109.5 |
C2 |
C3 |
H31 |
111.1 |
109.4 |
C2 |
C3 |
H32 |
111.1 |
109.5 |
H21 |
C2 |
H22 |
109.8 |
109.5 |
C4 |
C3 |
H31 |
111.1 |
109.5 |
C4 |
C3 |
H32 |
111.1 |
109.5 |
C3 |
C4 |
C5 |
111.7 |
109.5 |
C3 |
C4 |
H41 |
108.7 |
109.5 |
C3 |
C4 |
H42 |
108.7 |
109.5 |
H31 |
C3 |
H32 |
107.8 |
109.5 |
C5 |
C4 |
H41 |
108.8 |
109.5 |
C5 |
C4 |
H42 |
108.7 |
109.5 |
C4 |
C5 |
C6 |
111.0 |
109.4 |
C4 |
C5 |
H51 |
109.0 |
109.4 |
C4 |
C5 |
H52 |
109.0 |
109.5 |
H41 |
C4 |
H42 |
110.2 |
109.4 |
C6 |
C5 |
H51 |
109.0 |
109.5 |
C6 |
C5 |
H52 |
108.9 |
109.5 |
C5 |
C6 |
C7 |
112.7 |
109.4 |
C5 |
C6 |
H61 |
108.4 |
109.5 |
C5 |
C6 |
H62 |
108.4 |
109.5 |
H51 |
C5 |
H52 |
110.0 |
109.5 |
C7 |
C6 |
H61 |
108.4 |
109.5 |
C7 |
C6 |
H62 |
108.4 |
109.5 |
C6 |
C7 |
C8 |
111.6 |
109.4 |
C6 |
C7 |
H71 |
108.8 |
109.5 |
C6 |
C7 |
H72 |
108.8 |
109.5 |
H61 |
C6 |
H62 |
110.5 |
109.5 |
C8 |
C7 |
H71 |
108.8 |
109.5 |
C8 |
C7 |
H72 |
108.8 |
109.5 |
C7 |
C8 |
C9 |
111.7 |
109.5 |
C7 |
C8 |
H81 |
108.7 |
109.5 |
C7 |
C8 |
H82 |
108.8 |
109.5 |
H71 |
C7 |
H72 |
110.2 |
109.5 |
C9 |
C8 |
H81 |
108.7 |
109.4 |
C9 |
C8 |
H82 |
108.7 |
109.5 |
C8 |
C9 |
C10 |
110.7 |
109.5 |
C8 |
C9 |
H91 |
109.1 |
109.4 |
C8 |
C9 |
H92 |
109.1 |
109.5 |
H81 |
C8 |
H82 |
110.2 |
109.5 |
C10 |
C9 |
H91 |
109.1 |
109.5 |
C10 |
C9 |
H92 |
109.0 |
109.5 |
C9 |
C10 |
H101 |
109.5 |
109.5 |
C9 |
C10 |
H102 |
109.5 |
109.5 |
C9 |
C10 |
H103 |
109.5 |
109.5 |
H91 |
C9 |
H92 |
109.9 |
109.4 |
H101 |
C10 |
H102 |
109.4 |
109.5 |
H101 |
C10 |
H103 |
109.5 |
109.5 |
H102 |
C10 |
H103 |
109.5 |
109.4 |
Torsion Angles for DKA
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
O1 |
O2 |
180.2 |
180.2 |
O1 |
C1 |
C2 |
C3 |
289.1 |
0.1 |
O1 |
C1 |
C2 |
H21 |
49.1 |
120.0 |
O1 |
C1 |
C2 |
H22 |
169.1 |
240.0 |
O1 |
C1 |
O2 |
HO2 |
360.0 |
359.9 |
O1 |
C1 |
C2 |
O2 |
179.8 |
179.8 |
C2 |
C1 |
O2 |
HO2 |
179.8 |
179.7 |
C3 |
C2 |
C1 |
H21 |
240.0 |
240.1 |
C3 |
C2 |
C1 |
H22 |
120.0 |
120.0 |
C1 |
C2 |
C3 |
C4 |
190.4 |
180.0 |
C1 |
C2 |
C3 |
H31 |
310.4 |
300.0 |
C1 |
C2 |
C3 |
H32 |
70.4 |
60.0 |
H21 |
C2 |
C1 |
H22 |
240.0 |
240.0 |
O1 |
C1 |
O2 |
C2 |
180.2 |
180.2 |
O2 |
C1 |
C2 |
C3 |
109.2 |
180.2 |
O2 |
C1 |
C2 |
H21 |
229.2 |
300.2 |
O2 |
C1 |
C2 |
H22 |
349.2 |
60.2 |
C3 |
C2 |
C1 |
O2 |
109.2 |
180.2 |
C1 |
C2 |
C3 |
H21 |
120.0 |
120.0 |
C1 |
C2 |
C3 |
H22 |
240.0 |
239.9 |
H21 |
C2 |
C3 |
H22 |
120.0 |
120.0 |
C4 |
C3 |
C2 |
H31 |
240.0 |
240.0 |
C4 |
C3 |
C2 |
H32 |
120.0 |
120.0 |
C2 |
C3 |
C4 |
C5 |
139.0 |
180.0 |
C2 |
C3 |
C4 |
H41 |
259.0 |
300.1 |
C2 |
C3 |
C4 |
H42 |
19.0 |
60.0 |
H31 |
C3 |
C2 |
H32 |
240.0 |
240.0 |
H21 |
C2 |
C1 |
O2 |
229.2 |
300.2 |
C1 |
C2 |
H21 |
C3 |
239.2 |
240.0 |
C1 |
C2 |
H21 |
H22 |
119.6 |
120.1 |
C3 |
C2 |
H21 |
H22 |
240.4 |
240.0 |
H21 |
C2 |
C3 |
C4 |
70.5 |
60.0 |
H21 |
C2 |
C3 |
H31 |
190.4 |
180.0 |
H21 |
C2 |
C3 |
H32 |
310.5 |
300.0 |
H22 |
C2 |
C1 |
O2 |
349.2 |
60.2 |
C1 |
C2 |
H22 |
C3 |
120.8 |
120.0 |
C1 |
C2 |
H22 |
H21 |
240.4 |
240.0 |
C3 |
C2 |
H22 |
H21 |
119.6 |
119.9 |
H22 |
C2 |
C3 |
C4 |
310.4 |
300.0 |
H22 |
C2 |
C3 |
H31 |
70.4 |
60.1 |
H22 |
C2 |
C3 |
H32 |
190.4 |
180.0 |
C4 |
C3 |
C2 |
H21 |
70.5 |
60.0 |
C4 |
C3 |
C2 |
H22 |
310.4 |
300.0 |
C2 |
C3 |
C4 |
H31 |
120.0 |
120.0 |
C2 |
C3 |
C4 |
H32 |
240.0 |
240.0 |
H31 |
C3 |
C4 |
H32 |
120.0 |
120.0 |
C5 |
C4 |
C3 |
H41 |
240.0 |
239.9 |
C5 |
C4 |
C3 |
H42 |
120.0 |
120.0 |
C3 |
C4 |
C5 |
C6 |
164.7 |
180.0 |
C3 |
C4 |
C5 |
H51 |
284.8 |
300.0 |
C3 |
C4 |
C5 |
H52 |
44.8 |
60.0 |
H41 |
C4 |
C3 |
H42 |
240.0 |
240.1 |
H31 |
C3 |
C2 |
H21 |
190.4 |
180.0 |
H31 |
C3 |
C2 |
H22 |
70.4 |
60.1 |
C2 |
C3 |
H31 |
C4 |
243.9 |
240.0 |
C2 |
C3 |
H31 |
H32 |
121.9 |
120.0 |
C4 |
C3 |
H31 |
H32 |
238.0 |
240.0 |
H31 |
C3 |
C4 |
C5 |
19.0 |
60.0 |
H31 |
C3 |
C4 |
H41 |
139.0 |
180.1 |
H31 |
C3 |
C4 |
H42 |
259.0 |
300.0 |
H32 |
C3 |
C2 |
H21 |
310.5 |
300.0 |
H32 |
C3 |
C2 |
H22 |
190.4 |
180.0 |
C2 |
C3 |
H32 |
C4 |
116.1 |
120.0 |
C2 |
C3 |
H32 |
H31 |
238.0 |
240.1 |
C4 |
C3 |
H32 |
H31 |
122.0 |
120.0 |
H32 |
C3 |
C4 |
C5 |
259.0 |
300.0 |
H32 |
C3 |
C4 |
H41 |
19.0 |
60.1 |
H32 |
C3 |
C4 |
H42 |
139.0 |
180.0 |
C5 |
C4 |
C3 |
H31 |
19.0 |
60.0 |
C5 |
C4 |
C3 |
H32 |
259.0 |
300.0 |
C3 |
C4 |
C5 |
H41 |
120.0 |
120.0 |
C3 |
C4 |
C5 |
H42 |
240.0 |
240.0 |
H41 |
C4 |
C5 |
H42 |
120.0 |
120.0 |
C6 |
C5 |
C4 |
H51 |
240.0 |
240.0 |
C6 |
C5 |
C4 |
H52 |
120.0 |
120.0 |
C4 |
C5 |
C6 |
C7 |
158.3 |
180.0 |
C4 |
C5 |
C6 |
H61 |
278.3 |
299.9 |
C4 |
C5 |
C6 |
H62 |
38.3 |
60.0 |
H51 |
C5 |
C4 |
H52 |
240.0 |
240.0 |
H41 |
C4 |
C3 |
H31 |
139.0 |
180.1 |
H41 |
C4 |
C3 |
H32 |
19.0 |
60.1 |
C3 |
C4 |
H41 |
C5 |
238.2 |
240.0 |
C3 |
C4 |
H41 |
H42 |
119.1 |
120.0 |
C5 |
C4 |
H41 |
H42 |
240.9 |
240.0 |
H41 |
C4 |
C5 |
C6 |
44.7 |
60.0 |
H41 |
C4 |
C5 |
H51 |
164.7 |
180.0 |
H41 |
C4 |
C5 |
H52 |
284.8 |
299.9 |
H42 |
C4 |
C3 |
H31 |
259.0 |
300.0 |
H42 |
C4 |
C3 |
H32 |
139.0 |
180.0 |
C3 |
C4 |
H42 |
C5 |
121.8 |
120.0 |
C3 |
C4 |
H42 |
H41 |
240.9 |
240.0 |
C5 |
C4 |
H42 |
H41 |
119.1 |
120.0 |
H42 |
C4 |
C5 |
C6 |
284.7 |
300.0 |
H42 |
C4 |
C5 |
H51 |
44.8 |
60.0 |
H42 |
C4 |
C5 |
H52 |
164.8 |
180.0 |
C6 |
C5 |
C4 |
H41 |
44.7 |
60.0 |
C6 |
C5 |
C4 |
H42 |
284.7 |
300.0 |
C4 |
C5 |
C6 |
H51 |
120.0 |
119.9 |
C4 |
C5 |
C6 |
H52 |
240.0 |
240.0 |
H51 |
C5 |
C6 |
H52 |
120.0 |
120.0 |
C7 |
C6 |
C5 |
H61 |
240.0 |
240.1 |
C7 |
C6 |
C5 |
H62 |
120.0 |
120.0 |
C5 |
C6 |
C7 |
C8 |
247.8 |
180.0 |
C5 |
C6 |
C7 |
H71 |
7.8 |
300.0 |
C5 |
C6 |
C7 |
H72 |
127.8 |
60.0 |
H61 |
C6 |
C5 |
H62 |
240.0 |
239.9 |
H51 |
C5 |
C4 |
H41 |
164.7 |
180.0 |
H51 |
C5 |
C4 |
H42 |
44.8 |
60.0 |
C4 |
C5 |
H51 |
C6 |
238.7 |
240.0 |
C4 |
C5 |
H51 |
H52 |
119.4 |
120.0 |
C6 |
C5 |
H51 |
H52 |
240.7 |
239.9 |
H51 |
C5 |
C6 |
C7 |
38.3 |
60.1 |
H51 |
C5 |
C6 |
H61 |
158.3 |
180.0 |
H51 |
C5 |
C6 |
H62 |
278.3 |
300.1 |
H52 |
C5 |
C4 |
H41 |
284.8 |
299.9 |
H52 |
C5 |
C4 |
H42 |
164.8 |
180.0 |
C4 |
C5 |
H52 |
C6 |
121.3 |
120.0 |
C4 |
C5 |
H52 |
H51 |
240.6 |
240.0 |
C6 |
C5 |
H52 |
H51 |
119.3 |
120.0 |
H52 |
C5 |
C6 |
C7 |
278.3 |
300.0 |
H52 |
C5 |
C6 |
H61 |
38.3 |
60.0 |
H52 |
C5 |
C6 |
H62 |
158.3 |
180.0 |
C7 |
C6 |
C5 |
H51 |
38.3 |
60.1 |
C7 |
C6 |
C5 |
H52 |
278.3 |
300.0 |
C5 |
C6 |
C7 |
H61 |
120.0 |
120.0 |
C5 |
C6 |
C7 |
H62 |
240.0 |
240.0 |
H61 |
C6 |
C7 |
H62 |
120.0 |
120.0 |
C8 |
C7 |
C6 |
H71 |
240.0 |
240.0 |
C8 |
C7 |
C6 |
H72 |
120.0 |
119.9 |
C6 |
C7 |
C8 |
C9 |
146.0 |
180.0 |
C6 |
C7 |
C8 |
H81 |
266.0 |
300.0 |
C6 |
C7 |
C8 |
H82 |
26.0 |
60.0 |
H71 |
C7 |
C6 |
H72 |
240.0 |
239.9 |
H61 |
C6 |
C5 |
H51 |
158.3 |
180.0 |
H61 |
C6 |
C5 |
H52 |
38.3 |
60.0 |
C5 |
C6 |
H61 |
C7 |
237.4 |
240.1 |
C5 |
C6 |
H61 |
H62 |
118.7 |
120.1 |
C7 |
C6 |
H61 |
H62 |
241.3 |
240.0 |
H61 |
C6 |
C7 |
C8 |
127.8 |
60.0 |
H61 |
C6 |
C7 |
H71 |
247.8 |
180.0 |
H61 |
C6 |
C7 |
H72 |
7.8 |
300.1 |
H62 |
C6 |
C5 |
H51 |
278.3 |
300.1 |
H62 |
C6 |
C5 |
H52 |
158.3 |
180.0 |
C5 |
C6 |
H62 |
C7 |
122.6 |
120.0 |
C5 |
C6 |
H62 |
H61 |
241.3 |
240.0 |
C7 |
C6 |
H62 |
H61 |
118.7 |
120.0 |
H62 |
C6 |
C7 |
C8 |
7.8 |
300.0 |
H62 |
C6 |
C7 |
H71 |
127.8 |
60.0 |
H62 |
C6 |
C7 |
H72 |
247.8 |
180.0 |
C8 |
C7 |
C6 |
H61 |
127.8 |
60.0 |
C8 |
C7 |
C6 |
H62 |
7.8 |
300.0 |
C6 |
C7 |
C8 |
H71 |
120.0 |
120.0 |
C6 |
C7 |
C8 |
H72 |
240.0 |
240.1 |
H71 |
C7 |
C8 |
H72 |
120.0 |
120.0 |
C9 |
C8 |
C7 |
H81 |
240.0 |
240.0 |
C9 |
C8 |
C7 |
H82 |
120.0 |
120.0 |
C7 |
C8 |
C9 |
C10 |
246.8 |
180.0 |
C7 |
C8 |
C9 |
H91 |
6.8 |
300.0 |
C7 |
C8 |
C9 |
H92 |
126.8 |
60.0 |
H81 |
C8 |
C7 |
H82 |
240.0 |
239.9 |
H71 |
C7 |
C6 |
H61 |
247.8 |
180.0 |
H71 |
C7 |
C6 |
H62 |
127.8 |
60.0 |
C6 |
C7 |
H71 |
C8 |
238.3 |
240.0 |
C6 |
C7 |
H71 |
H72 |
119.1 |
120.0 |
C8 |
C7 |
H71 |
H72 |
240.9 |
240.0 |
H71 |
C7 |
C8 |
C9 |
26.0 |
60.0 |
H71 |
C7 |
C8 |
H81 |
146.0 |
179.9 |
H71 |
C7 |
C8 |
H82 |
266.0 |
300.0 |
H72 |
C7 |
C6 |
H61 |
7.8 |
300.1 |
H72 |
C7 |
C6 |
H62 |
247.8 |
180.0 |
C6 |
C7 |
H72 |
C8 |
121.8 |
119.9 |
C6 |
C7 |
H72 |
H71 |
240.9 |
239.9 |
C8 |
C7 |
H72 |
H71 |
119.1 |
120.0 |
H72 |
C7 |
C8 |
C9 |
266.0 |
299.9 |
H72 |
C7 |
C8 |
H81 |
26.0 |
59.9 |
H72 |
C7 |
C8 |
H82 |
146.0 |
180.0 |
C9 |
C8 |
C7 |
H71 |
26.0 |
60.0 |
C9 |
C8 |
C7 |
H72 |
266.0 |
299.9 |
C7 |
C8 |
C9 |
H81 |
120.0 |
120.0 |
C7 |
C8 |
C9 |
H82 |
240.0 |
240.0 |
H81 |
C8 |
C9 |
H82 |
120.0 |
120.0 |
C10 |
C9 |
C8 |
H91 |
240.0 |
240.0 |
C10 |
C9 |
C8 |
H92 |
120.0 |
120.0 |
C8 |
C9 |
C10 |
H101 |
180.0 |
300.0 |
C8 |
C9 |
C10 |
H102 |
300.0 |
60.0 |
C8 |
C9 |
C10 |
H103 |
60.0 |
180.0 |
H91 |
C9 |
C8 |
H92 |
240.0 |
240.1 |
H81 |
C8 |
C7 |
H71 |
146.0 |
179.9 |
H81 |
C8 |
C7 |
H72 |
26.0 |
59.9 |
C7 |
C8 |
H81 |
C9 |
238.2 |
240.0 |
C7 |
C8 |
H81 |
H82 |
119.1 |
120.0 |
C9 |
C8 |
H81 |
H82 |
240.9 |
240.0 |
H81 |
C8 |
C9 |
C10 |
126.8 |
60.0 |
H81 |
C8 |
C9 |
H91 |
246.8 |
180.0 |
H81 |
C8 |
C9 |
H92 |
6.8 |
300.0 |
H82 |
C8 |
C7 |
H71 |
266.0 |
300.0 |
H82 |
C8 |
C7 |
H72 |
146.0 |
180.0 |
C7 |
C8 |
H82 |
C9 |
121.8 |
120.0 |
C7 |
C8 |
H82 |
H81 |
240.9 |
239.9 |
C9 |
C8 |
H82 |
H81 |
119.1 |
119.9 |
H82 |
C8 |
C9 |
C10 |
6.8 |
300.0 |
H82 |
C8 |
C9 |
H91 |
126.8 |
60.0 |
H82 |
C8 |
C9 |
H92 |
246.8 |
180.0 |
C10 |
C9 |
C8 |
H81 |
126.8 |
60.0 |
C10 |
C9 |
C8 |
H82 |
6.8 |
300.0 |
C8 |
C9 |
C10 |
H91 |
120.0 |
120.0 |
C8 |
C9 |
C10 |
H92 |
240.0 |
240.0 |
H91 |
C9 |
C10 |
H92 |
120.0 |
120.0 |
H101 |
C10 |
C9 |
H102 |
240.0 |
240.0 |
H101 |
C10 |
C9 |
H103 |
120.0 |
120.1 |
H102 |
C10 |
C9 |
H103 |
240.0 |
240.1 |
H91 |
C9 |
C8 |
H81 |
246.8 |
180.0 |
H91 |
C9 |
C8 |
H82 |
126.8 |
60.0 |
C8 |
C9 |
H91 |
C10 |
239.0 |
240.0 |
C8 |
C9 |
H91 |
H92 |
119.5 |
120.0 |
C10 |
C9 |
H91 |
H92 |
240.5 |
240.0 |
H91 |
C9 |
C10 |
H101 |
60.0 |
180.0 |
H91 |
C9 |
C10 |
H102 |
180.0 |
300.0 |
H91 |
C9 |
C10 |
H103 |
300.0 |
60.0 |
H92 |
C9 |
C8 |
H81 |
6.8 |
300.0 |
H92 |
C9 |
C8 |
H82 |
246.8 |
180.0 |
C8 |
C9 |
H92 |
C10 |
121.0 |
120.0 |
C8 |
C9 |
H92 |
H91 |
240.5 |
240.1 |
C10 |
C9 |
H92 |
H91 |
119.5 |
120.0 |
H92 |
C9 |
C10 |
H101 |
300.0 |
60.0 |
H92 |
C9 |
C10 |
H102 |
60.0 |
180.0 |
H92 |
C9 |
C10 |
H103 |
180.0 |
300.0 |
H101 |
C10 |
C9 |
H91 |
60.0 |
180.0 |
H101 |
C10 |
C9 |
H92 |
300.0 |
60.0 |
C9 |
C10 |
H101 |
H102 |
120.0 |
120.0 |
C9 |
C10 |
H101 |
H103 |
240.0 |
240.0 |
H102 |
C10 |
H101 |
H103 |
120.0 |
120.0 |
H102 |
C10 |
C9 |
H91 |
180.0 |
300.0 |
H102 |
C10 |
C9 |
H92 |
60.0 |
180.0 |
C9 |
C10 |
H102 |
H101 |
240.0 |
240.0 |
C9 |
C10 |
H102 |
H103 |
120.0 |
120.0 |
H101 |
C10 |
H102 |
H103 |
240.0 |
240.0 |
H103 |
C10 |
C9 |
H91 |
300.0 |
60.0 |
H103 |
C10 |
C9 |
H92 |
180.0 |
300.0 |
C9 |
C10 |
H103 |
H101 |
120.0 |
120.0 |
C9 |
C10 |
H103 |
H102 |
240.0 |
240.0 |
H101 |
C10 |
H103 |
H102 |
120.0 |
120.0 |