PDB Chemical Component DK1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DK1
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O1 |
C2 |
1.205 |
1.347 |
O1 |
HO1 |
0.950 |
0.967 |
C2 |
O2 |
1.300 |
1.214 |
C2 |
C1 |
1.511 |
1.483 |
C1 |
N1 |
1.379 |
1.319 |
C1 |
C3 |
1.372 |
1.399 |
N1 |
C10 |
1.393 |
1.334 |
C10 |
C9 |
1.437 |
1.406 |
C10 |
C5 |
1.447 |
1.418 |
C9 |
C8 |
1.393 |
1.362 |
C9 |
H9 |
1.103 |
1.080 |
C8 |
CL2 |
1.711 |
1.736 |
C8 |
C7 |
1.404 |
1.393 |
C7 |
C6 |
1.380 |
1.364 |
C7 |
H7 |
1.103 |
1.080 |
C6 |
CL1 |
1.711 |
1.737 |
C6 |
C5 |
1.451 |
1.403 |
C5 |
C4 |
1.491 |
1.411 |
C4 |
O3 |
1.246 |
1.356 |
C4 |
C3 |
1.452 |
1.383 |
O3 |
HO3 |
0.951 |
0.966 |
C3 |
H3 |
1.103 |
1.080 |
Bond Angles for DK1
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
O1 |
HO1 |
125.0 |
120.0 |
O1 |
C2 |
O2 |
125.0 |
120.1 |
O1 |
C2 |
C1 |
121.4 |
119.9 |
O2 |
C2 |
C1 |
113.6 |
120.0 |
C2 |
C1 |
N1 |
114.6 |
119.2 |
C2 |
C1 |
C3 |
124.0 |
119.2 |
N1 |
C1 |
C3 |
121.4 |
121.6 |
C1 |
N1 |
C10 |
122.2 |
121.6 |
C1 |
C3 |
C4 |
121.7 |
119.6 |
C1 |
C3 |
H3 |
116.3 |
120.2 |
N1 |
C10 |
C9 |
118.2 |
120.9 |
N1 |
C10 |
C5 |
119.3 |
120.0 |
C9 |
C10 |
C5 |
122.6 |
119.1 |
C10 |
C9 |
C8 |
117.5 |
119.8 |
C10 |
C9 |
H9 |
122.7 |
120.1 |
C10 |
C5 |
C6 |
115.1 |
119.5 |
C10 |
C5 |
C4 |
119.1 |
119.2 |
C8 |
C9 |
H9 |
119.8 |
120.1 |
C9 |
C8 |
CL2 |
119.1 |
119.5 |
C9 |
C8 |
C7 |
122.5 |
121.0 |
CL2 |
C8 |
C7 |
118.4 |
119.5 |
C8 |
C7 |
C6 |
119.7 |
120.8 |
C8 |
C7 |
H7 |
121.0 |
119.6 |
C6 |
C7 |
H7 |
119.3 |
119.5 |
C7 |
C6 |
CL1 |
114.2 |
120.2 |
C7 |
C6 |
C5 |
122.6 |
119.7 |
CL1 |
C6 |
C5 |
123.1 |
120.2 |
C6 |
C5 |
C4 |
125.8 |
121.3 |
C5 |
C4 |
O3 |
123.8 |
121.0 |
C5 |
C4 |
C3 |
116.3 |
118.0 |
O3 |
C4 |
C3 |
119.9 |
121.0 |
C4 |
O3 |
HO3 |
123.8 |
106.8 |
C4 |
C3 |
H3 |
122.0 |
120.2 |
Torsion Angles for DK1
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O2 |
C2 |
O1 |
C1 |
180.1 |
180.0 |
O1 |
C2 |
C1 |
N1 |
0.1 |
359.8 |
O1 |
C2 |
C1 |
C3 |
180.1 |
180.0 |
HO1 |
O1 |
C2 |
O2 |
180.0 |
360.0 |
HO1 |
O1 |
C2 |
C1 |
359.9 |
180.0 |
O2 |
C2 |
O1 |
HO1 |
180.0 |
360.0 |
O1 |
C2 |
O2 |
C1 |
179.9 |
180.0 |
O2 |
C2 |
C1 |
N1 |
180.0 |
179.8 |
O2 |
C2 |
C1 |
C3 |
360.0 |
360.0 |
C1 |
C2 |
O1 |
HO1 |
359.9 |
180.0 |
O1 |
C2 |
C1 |
O2 |
180.1 |
180.0 |
N1 |
C1 |
C2 |
C3 |
180.1 |
179.8 |
C2 |
C1 |
N1 |
C10 |
180.4 |
179.8 |
C2 |
C1 |
C3 |
C4 |
179.5 |
180.0 |
C2 |
C1 |
C3 |
H3 |
359.5 |
359.9 |
C2 |
C1 |
N1 |
C3 |
179.9 |
180.2 |
N1 |
C1 |
C3 |
C4 |
359.4 |
0.2 |
N1 |
C1 |
C3 |
H3 |
179.4 |
180.1 |
C1 |
N1 |
C10 |
C9 |
180.3 |
180.3 |
C1 |
N1 |
C10 |
C5 |
0.2 |
0.3 |
C2 |
C1 |
C3 |
N1 |
180.1 |
179.8 |
C3 |
C1 |
N1 |
C10 |
0.5 |
359.7 |
C5 |
C4 |
C3 |
C1 |
0.0 |
0.0 |
O3 |
C4 |
C3 |
C1 |
179.8 |
180.0 |
C4 |
C3 |
C1 |
H3 |
180.0 |
180.1 |
C10 |
N1 |
C1 |
C3 |
0.5 |
359.7 |
C9 |
C10 |
N1 |
C5 |
180.1 |
179.9 |
N1 |
C10 |
C9 |
C8 |
180.2 |
180.2 |
N1 |
C10 |
C9 |
H9 |
0.2 |
0.1 |
N1 |
C10 |
C5 |
C6 |
179.2 |
179.9 |
N1 |
C10 |
C5 |
C4 |
359.3 |
359.8 |
N1 |
C10 |
C9 |
C5 |
179.9 |
180.1 |
C9 |
C10 |
C5 |
C6 |
359.1 |
359.9 |
C9 |
C10 |
C5 |
C4 |
179.2 |
179.9 |
C8 |
C9 |
C10 |
H9 |
180.0 |
180.1 |
C10 |
C9 |
C8 |
CL2 |
180.6 |
179.9 |
C10 |
C9 |
C8 |
C7 |
0.5 |
360.0 |
N1 |
C10 |
C5 |
C9 |
180.1 |
179.9 |
C5 |
C10 |
C9 |
C8 |
0.3 |
0.1 |
C5 |
C10 |
C9 |
H9 |
180.3 |
180.0 |
C7 |
C6 |
C5 |
C10 |
0.9 |
0.0 |
CL1 |
C6 |
C5 |
C10 |
181.2 |
180.0 |
C6 |
C5 |
C10 |
C4 |
179.8 |
180.0 |
C10 |
C5 |
C4 |
O3 |
180.8 |
180.0 |
C10 |
C5 |
C4 |
C3 |
0.6 |
360.0 |
C8 |
C9 |
C10 |
C5 |
0.3 |
0.1 |
C10 |
C9 |
C8 |
H9 |
180.0 |
179.9 |
CL2 |
C8 |
C9 |
C7 |
180.1 |
180.0 |
C9 |
C8 |
C7 |
C6 |
359.4 |
0.0 |
C9 |
C8 |
C7 |
H7 |
179.4 |
180.0 |
H9 |
C9 |
C10 |
C5 |
180.3 |
180.0 |
C10 |
C9 |
H9 |
C8 |
180.0 |
180.1 |
H9 |
C9 |
C8 |
CL2 |
0.7 |
0.0 |
H9 |
C9 |
C8 |
C7 |
180.5 |
180.1 |
CL2 |
C8 |
C9 |
H9 |
0.7 |
0.0 |
C9 |
C8 |
CL2 |
C7 |
179.9 |
180.0 |
CL2 |
C8 |
C7 |
C6 |
179.3 |
180.0 |
CL2 |
C8 |
C7 |
H7 |
359.3 |
0.0 |
C7 |
C8 |
C9 |
H9 |
180.5 |
180.1 |
C9 |
C8 |
C7 |
CL2 |
180.1 |
180.0 |
C6 |
C7 |
C8 |
H7 |
180.0 |
180.0 |
C8 |
C7 |
C6 |
CL1 |
179.6 |
180.0 |
C8 |
C7 |
C6 |
C5 |
359.8 |
0.0 |
C10 |
C5 |
C6 |
C7 |
0.9 |
0.0 |
C8 |
C7 |
C6 |
H7 |
180.0 |
180.0 |
CL1 |
C6 |
C7 |
C5 |
179.7 |
180.0 |
C7 |
C6 |
C5 |
C4 |
180.7 |
180.0 |
C8 |
C7 |
H7 |
C6 |
180.0 |
180.0 |
H7 |
C7 |
C6 |
CL1 |
359.6 |
0.0 |
H7 |
C7 |
C6 |
C5 |
179.8 |
180.0 |
C10 |
C5 |
C6 |
CL1 |
181.2 |
180.0 |
CL1 |
C6 |
C7 |
H7 |
359.6 |
0.0 |
C7 |
C6 |
CL1 |
C5 |
180.3 |
180.0 |
CL1 |
C6 |
C5 |
C4 |
1.0 |
0.0 |
C10 |
C5 |
C6 |
C4 |
180.2 |
180.0 |
C5 |
C6 |
C7 |
H7 |
179.8 |
180.0 |
C7 |
C6 |
C5 |
CL1 |
179.7 |
180.0 |
C6 |
C5 |
C4 |
O3 |
1.0 |
0.0 |
C6 |
C5 |
C4 |
C3 |
180.7 |
180.0 |
C1 |
C3 |
C4 |
C5 |
0.0 |
0.0 |
C10 |
C5 |
C4 |
C6 |
179.8 |
180.0 |
O3 |
C4 |
C5 |
C3 |
180.2 |
180.0 |
C5 |
C4 |
O3 |
HO3 |
180.0 |
270.0 |
C5 |
C4 |
C3 |
H3 |
180.1 |
180.1 |
C1 |
C3 |
C4 |
O3 |
179.8 |
180.0 |
C5 |
C4 |
O3 |
C3 |
179.8 |
180.0 |
O3 |
C4 |
C3 |
H3 |
359.8 |
0.0 |
C1 |
C3 |
C4 |
H3 |
180.0 |
179.9 |
C5 |
C4 |
C3 |
O3 |
180.2 |
180.0 |
C3 |
C4 |
O3 |
HO3 |
0.2 |
90.0 |
HO3 |
O3 |
C4 |
C3 |
0.2 |
90.0 |
C1 |
C3 |
H3 |
C4 |
180.0 |
180.1 |