PDB Chemical Component DJN

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DJN

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O4	C4	1.431	1.429
O3	C3	1.433	1.429
C4	C3	1.529	1.531
C4	C5	1.525	1.531
C6	C5	1.542	1.531
C6	O6	1.440	1.429
C3	C2	1.504	1.531
C5	N5	1.467	1.469
O7	C7	1.232	1.213
C2	N2	1.456	1.466
C2	C1	1.533	1.530
N5	C1	1.469	1.469
C7	N2	1.336	1.348
C7	C8	1.519	1.507
C8	H1	1.100	1.090
C8	H2	1.100	1.090
C8	H3	1.100	1.090
N2	H4	1.000	0.969
C2	H5	1.101	1.090
C3	H6	1.100	1.091
O3	H7	0.950	0.967
C4	H8	1.101	1.089
O4	H9	0.950	0.967
C5	H10	1.100	1.090
C6	H11	1.100	1.090
C6	H12	1.100	1.090
O6	H13	0.950	0.967
N5	H14	1.000	1.009
C1	H16	1.100	1.090
C1	H17	1.100	1.090

Bond Angles for DJN

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O4	C4	C5	109.8	109.5
O4	C4	H8	110.3	109.6
O3	C3	H6	109.5	109.5
C4	C3	H6	108.2	109.5
C4	C5	N5	116.6	109.6
C5	C4	H8	109.0	109.5
C4	C5	H10	106.7	109.4
C6	C5	N5	108.9	109.5
C6	C5	H10	106.5	109.5
O6	C6	H11	109.4	109.5
O6	C6	H12	109.4	109.5
C6	O6	H13	109.5	114.0
C3	C2	C1	108.3	109.3
C3	C2	H5	108.2	109.5
C5	N5	C1	111.0	111.1
N5	C5	H10	107.4	109.5
C5	N5	H14	109.1	111.0
O7	C7	N2	120.6	120.0
O7	C7	C8	123.1	120.0
C2	N2	H4	118.7	120.0
C2	C1	N5	111.2	109.5
C1	C2	H5	107.8	109.5
C2	C1	H16	109.1	109.5
C2	C1	H17	109.1	109.5
C1	N5	H14	109.1	111.0
N5	C1	H16	109.0	109.4
N5	C1	H17	109.0	109.5
C8	C7	N2	116.3	120.0
C7	N2	H4	118.6	120.1
C7	C8	H1	109.5	109.5
C7	C8	H2	109.5	109.5
C7	C8	H3	109.5	109.5
H1	C8	H2	109.4	109.4
H1	C8	H3	109.4	109.5
H2	C8	H3	109.5	109.5
H11	C6	H12	109.5	109.5
H16	C1	H17	109.4	109.4

Torsion Angles for DJN

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O4	C4	C3	H6	180.0	177.8
O4	C4	C5	N5	70.0	60.7
C5	C4	O4	H8	120.1	120.1
O4	C4	C5	H10	190.0	180.8
C4	C3	O3	H6	119.3	120.1
O3	C3	C2	C1	173.0	182.4
O3	C3	C2	H5	289.6	302.3
O3	C3	C4	H6	240.0	239.9
C4	C3	C2	C1	295.0	302.3
C4	C3	C2	H5	51.6	62.3
O4	C4	C5	H8	239.1	239.8
C5	C4	C3	H6	300.4	297.7
C6	C5	C4	N5	235.2	240.0
C6	C5	C4	H10	115.2	119.9
C4	C5	N5	C1	47.6	61.7
N5	C5	C4	H10	240.1	240.0
C4	C5	N5	H14	167.8	185.8
C4	C5	C6	N5	129.1	120.1
C6	C5	C4	H8	66.1	60.9
C4	C5	C6	H10	244.6	240.1
C6	C5	N5	C1	173.0	181.8
N5	C5	C6	H10	115.5	120.0
C6	C5	N5	H14	293.3	305.8
O6	C6	C5	N5	48.7	64.9
O6	C6	C5	H10	293.2	304.9
H11	C6	O6	H12	120.0	120.0
C3	C2	N2	H4	61.7	24.9
C3	C2	C1	N5	64.2	59.2
C1	C2	C3	H5	243.4	240.1
C3	C2	C1	H16	184.5	179.2
C3	C2	C1	H17	304.0	299.1
N5	C5	C4	H8	190.9	180.9
C4	C5	N5	H10	119.6	120.0
C6	C5	N5	H10	245.0	240.0
C2	C1	N5	C5	306.8	298.2
C1	N5	C5	H14	239.7	235.9
C5	N5	C1	H16	186.5	178.3
C5	N5	C1	H17	67.0	58.3
C8	C7	O7	N2	180.4	180.2
O7	C7	N2	H4	188.4	180.0
O7	C7	C8	H1	360.0	0.0
O7	C7	C8	H2	120.0	120.0
O7	C7	C8	H3	240.0	240.0
C7	N2	C2	H4	180.0	179.9
C3	C2	C1	H5	116.8	120.0
C5	N5	C1	C2	306.8	298.2
C1	C2	N2	H4	300.4	265.1
C2	C1	N5	H14	186.5	174.2
N5	C1	C2	H16	239.7	240.1
N5	C1	C2	H17	120.3	120.1
H16	C1	C2	H17	240.5	240.0
C1	N5	C5	H10	288.0	301.7
C5	N5	C1	H14	120.2	124.0
N5	C1	C2	H5	307.4	299.3
C2	C1	N5	H16	120.3	120.0
C2	C1	N5	H17	239.7	239.9
H16	C1	N5	H17	119.4	119.9
O7	C7	N2	C8	180.4	180.2
C2	N2	C7	H4	180.0	180.1
N2	C7	C8	H1	180.4	180.3
N2	C7	C8	H2	300.4	300.2
N2	C7	C8	H3	60.4	60.2
O7	C7	C8	N2	179.6	179.8
C8	C7	N2	H4	8.0	359.7
H1	C8	C7	H2	240.0	240.1
H1	C8	C7	H3	120.0	120.0
H2	C8	C7	H3	240.0	240.0
H1	C8	C7	N2	180.4	180.3
C7	C8	H1	H2	120.0	119.9
C7	C8	H1	H3	240.0	239.9
H2	C8	H1	H3	120.0	120.0
H2	C8	C7	N2	300.4	300.2
C7	C8	H2	H1	240.0	240.0
C7	C8	H2	H3	120.0	120.1
H1	C8	H2	H3	240.0	240.0
H3	C8	C7	N2	60.4	60.2
C7	C8	H3	H1	120.0	120.0
C7	C8	H3	H2	240.0	240.0
H1	C8	H3	H2	120.0	119.9
C3	C2	H5	C1	243.1	240.2
H5	C2	N2	H4	183.6	145.0
H5	C2	C1	N5	307.4	299.3
H5	C2	C1	H16	67.7	59.2
H5	C2	C1	H17	187.2	179.2
H6	C3	C2	C1	51.7	62.3
H6	C3	C2	H5	168.3	182.2
H7	O3	C3	H6	60.7	300.1
O4	C4	H8	C5	120.6	120.1
H8	C4	C3	H6	59.5	57.6
H8	C4	C5	N5	190.9	180.9
H8	C4	C5	H10	310.8	300.9
H9	O4	C4	C5	59.7	180.3
H9	O4	C4	H8	299.6	60.1
C4	C5	H10	N5	234.2	239.9
H10	C5	C4	H8	310.8	300.9
C6	C5	H10	N5	116.6	120.0
H10	C5	N5	C1	288.0	301.7
H10	C5	N5	H14	48.2	65.8
H11	C6	C5	N5	168.7	184.9
H11	C6	C5	H10	53.2	65.0
O6	C6	H11	H12	240.1	240.0
H11	C6	O6	H13	60.0	60.0
H12	C6	C5	N5	288.7	304.9
H12	C6	C5	H10	173.1	184.9
O6	C6	H12	H11	119.9	120.0
H12	C6	O6	H13	300.0	300.0
H13	O6	C6	H11	60.0	60.0
H13	O6	C6	H12	300.0	300.0
C5	N5	H14	C1	238.6	235.9
H14	N5	C5	H10	48.2	65.8
H14	N5	C1	H16	66.2	54.2
H14	N5	C1	H17	306.8	294.3
C2	C1	H16	N5	238.4	240.0
H16	C1	C2	H5	67.7	59.2
C2	C1	H16	H17	119.3	120.0
H16	C1	N5	H14	66.2	54.2
N5	C1	H16	H17	240.8	240.0
C2	C1	H17	N5	121.5	120.1
H17	C1	C2	H5	187.2	179.2
C2	C1	H17	H16	240.7	240.0
H17	C1	N5	H14	306.8	294.3
N5	C1	H17	H16	119.2	119.9