PDB Chemical Component DJL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DJL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.382 |
1.382 |
| C1 |
C6 |
1.385 |
1.382 |
| C1 |
H1 |
1.080 |
1.081 |
| C2 |
C3 |
1.380 |
1.382 |
| C2 |
H2 |
1.080 |
1.080 |
| C3 |
C4 |
1.382 |
1.381 |
| C3 |
H3 |
1.080 |
1.081 |
| C4 |
C5 |
1.391 |
1.388 |
| C4 |
H4 |
1.080 |
1.080 |
| C5 |
C6 |
1.385 |
1.387 |
| C5 |
O7 |
1.393 |
1.359 |
| C6 |
H6 |
1.080 |
1.080 |
| O7 |
C8 |
1.390 |
1.359 |
| C8 |
C9 |
1.399 |
1.388 |
| C8 |
C13 |
1.384 |
1.390 |
| C9 |
C10 |
1.381 |
1.382 |
| C9 |
CL1 |
1.735 |
1.736 |
| C10 |
C11 |
1.388 |
1.382 |
| C10 |
H10 |
1.080 |
1.080 |
| C11 |
C12 |
1.394 |
1.383 |
| C11 |
H11 |
1.080 |
1.080 |
| C12 |
C13 |
1.413 |
1.383 |
| C12 |
C30 |
1.523 |
1.507 |
| C13 |
F23 |
1.344 |
1.351 |
| N20 |
C30 |
1.492 |
1.470 |
| N20 |
HN20 |
1.000 |
1.008 |
| N20 |
HN2A |
1.000 |
1.009 |
| N20 |
HN2B |
1.000 |
1.009 |
| C22 |
C23 |
1.484 |
1.530 |
| C22 |
H22 |
1.100 |
1.090 |
| C22 |
H22A |
1.100 |
1.090 |
| C22 |
H22B |
1.100 |
1.090 |
| C23 |
C30 |
1.526 |
1.530 |
| C23 |
H23 |
1.100 |
1.090 |
| C23 |
H23A |
1.100 |
1.090 |
| C30 |
H30 |
1.100 |
1.090 |
Bond Angles for DJL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
120.2 |
120.0 |
| C2 |
C1 |
H1 |
119.9 |
120.0 |
| C1 |
C2 |
C3 |
120.2 |
120.1 |
| C1 |
C2 |
H2 |
119.9 |
119.9 |
| C6 |
C1 |
H1 |
119.9 |
120.0 |
| C1 |
C6 |
C5 |
119.8 |
119.9 |
| C1 |
C6 |
H6 |
120.1 |
120.0 |
| C3 |
C2 |
H2 |
119.9 |
119.9 |
| C2 |
C3 |
C4 |
120.0 |
120.1 |
| C2 |
C3 |
H3 |
120.0 |
120.0 |
| C4 |
C3 |
H3 |
120.0 |
119.9 |
| C3 |
C4 |
C5 |
120.0 |
119.9 |
| C3 |
C4 |
H4 |
120.0 |
120.1 |
| C5 |
C4 |
H4 |
120.0 |
120.0 |
| C4 |
C5 |
C6 |
119.8 |
119.9 |
| C4 |
C5 |
O7 |
113.5 |
120.1 |
| C6 |
C5 |
O7 |
126.6 |
120.0 |
| C5 |
C6 |
H6 |
120.1 |
120.1 |
| C5 |
O7 |
C8 |
121.8 |
118.0 |
| O7 |
C8 |
C9 |
123.7 |
120.1 |
| O7 |
C8 |
C13 |
118.2 |
120.0 |
| C9 |
C8 |
C13 |
118.1 |
119.9 |
| C8 |
C9 |
C10 |
121.0 |
119.9 |
| C8 |
C9 |
CL1 |
120.7 |
120.0 |
| C8 |
C13 |
C12 |
122.2 |
119.9 |
| C8 |
C13 |
F23 |
118.2 |
120.1 |
| C10 |
C9 |
CL1 |
118.4 |
120.1 |
| C9 |
C10 |
C11 |
120.3 |
120.1 |
| C9 |
C10 |
H10 |
119.8 |
119.9 |
| C11 |
C10 |
H10 |
119.9 |
120.0 |
| C10 |
C11 |
C12 |
120.6 |
120.1 |
| C10 |
C11 |
H11 |
119.7 |
120.0 |
| C12 |
C11 |
H11 |
119.7 |
119.9 |
| C11 |
C12 |
C13 |
117.8 |
120.0 |
| C11 |
C12 |
C30 |
119.8 |
120.0 |
| C13 |
C12 |
C30 |
122.4 |
120.0 |
| C12 |
C13 |
F23 |
119.6 |
120.0 |
| C12 |
C30 |
N20 |
111.6 |
109.5 |
| C12 |
C30 |
C23 |
114.0 |
109.4 |
| C12 |
C30 |
H30 |
107.5 |
109.5 |
| C30 |
N20 |
HN20 |
109.5 |
109.4 |
| C30 |
N20 |
HN2A |
109.5 |
109.5 |
| C30 |
N20 |
HN2B |
109.5 |
109.4 |
| N20 |
C30 |
C23 |
108.0 |
109.5 |
| N20 |
C30 |
H30 |
107.9 |
109.5 |
| HN20 |
N20 |
HN2A |
109.5 |
109.5 |
| HN20 |
N20 |
HN2B |
109.5 |
109.4 |
| HN2A |
N20 |
HN2B |
109.5 |
109.5 |
| C23 |
C22 |
H22 |
109.5 |
109.5 |
| C23 |
C22 |
H22A |
109.5 |
109.5 |
| C23 |
C22 |
H22B |
109.5 |
109.5 |
| C22 |
C23 |
C30 |
113.6 |
109.5 |
| C22 |
C23 |
H23 |
108.4 |
109.4 |
| C22 |
C23 |
H23A |
108.4 |
109.4 |
| H22 |
C22 |
H22A |
109.5 |
109.5 |
| H22 |
C22 |
H22B |
109.5 |
109.5 |
| H22A |
C22 |
H22B |
109.5 |
109.5 |
| C30 |
C23 |
H23 |
108.4 |
109.5 |
| C30 |
C23 |
H23A |
108.4 |
109.5 |
| C23 |
C30 |
H30 |
107.5 |
109.5 |
| H23 |
C23 |
H23A |
109.5 |
109.5 |
Torsion Angles for DJL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C2 |
H1 |
180.0 |
180.3 |
| C2 |
C1 |
C6 |
C5 |
359.9 |
360.0 |
| C2 |
C1 |
C6 |
H6 |
180.0 |
179.9 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
| C1 |
C2 |
C3 |
C4 |
359.9 |
360.0 |
| C1 |
C2 |
C3 |
H3 |
179.9 |
180.0 |
| C2 |
C1 |
C6 |
H1 |
180.0 |
179.7 |
| C6 |
C1 |
C2 |
C3 |
0.1 |
0.1 |
| C6 |
C1 |
C2 |
H2 |
180.1 |
180.0 |
| C4 |
C5 |
C6 |
C1 |
0.0 |
360.0 |
| C1 |
C6 |
C5 |
O7 |
180.0 |
180.0 |
| C5 |
C6 |
C1 |
H6 |
180.0 |
180.1 |
| C2 |
C1 |
H1 |
C6 |
180.0 |
180.3 |
| H1 |
C1 |
C2 |
C3 |
180.1 |
179.7 |
| H1 |
C1 |
C2 |
H2 |
0.1 |
359.7 |
| H1 |
C1 |
C6 |
C5 |
179.9 |
180.3 |
| H1 |
C1 |
C6 |
H6 |
359.9 |
0.3 |
| C3 |
C2 |
C1 |
C6 |
0.1 |
0.1 |
| C3 |
C2 |
C1 |
H1 |
180.1 |
179.7 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.0 |
| C2 |
C3 |
C4 |
C5 |
0.0 |
0.0 |
| C2 |
C3 |
C4 |
H4 |
180.0 |
180.0 |
| H2 |
C2 |
C1 |
C6 |
180.1 |
180.0 |
| H2 |
C2 |
C1 |
H1 |
0.1 |
359.7 |
| C1 |
C2 |
H2 |
C3 |
180.0 |
180.0 |
| H2 |
C2 |
C3 |
C4 |
179.9 |
180.0 |
| H2 |
C2 |
C3 |
H3 |
359.9 |
0.0 |
| C4 |
C3 |
C2 |
H2 |
179.9 |
180.0 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
180.0 |
| C5 |
C4 |
C3 |
H4 |
180.0 |
180.0 |
| C3 |
C4 |
C5 |
C6 |
360.0 |
0.0 |
| C3 |
C4 |
C5 |
O7 |
180.0 |
180.0 |
| H3 |
C3 |
C2 |
H2 |
359.9 |
0.0 |
| C2 |
C3 |
H3 |
C4 |
180.0 |
180.0 |
| H3 |
C3 |
C4 |
C5 |
180.0 |
180.0 |
| H3 |
C3 |
C4 |
H4 |
0.0 |
360.0 |
| C1 |
C6 |
C5 |
C4 |
0.0 |
360.0 |
| C5 |
C4 |
C3 |
H3 |
180.0 |
180.0 |
| C3 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
O7 |
180.0 |
180.1 |
| C4 |
C5 |
C6 |
H6 |
180.0 |
180.0 |
| C4 |
C5 |
O7 |
C8 |
183.6 |
180.0 |
| H4 |
C4 |
C3 |
H3 |
0.0 |
360.0 |
| C3 |
C4 |
H4 |
C5 |
180.0 |
180.0 |
| H4 |
C4 |
C5 |
C6 |
180.0 |
180.1 |
| H4 |
C4 |
C5 |
O7 |
360.0 |
360.0 |
| C5 |
C6 |
C1 |
H1 |
179.9 |
180.3 |
| C1 |
C6 |
C5 |
H6 |
180.0 |
179.9 |
| C6 |
C5 |
C4 |
H4 |
180.0 |
180.1 |
| C4 |
C5 |
C6 |
O7 |
180.0 |
179.9 |
| C6 |
C5 |
O7 |
C8 |
3.6 |
360.0 |
| O7 |
C5 |
C4 |
H4 |
360.0 |
360.0 |
| C4 |
C5 |
O7 |
C6 |
180.0 |
180.1 |
| O7 |
C5 |
C6 |
H6 |
0.0 |
0.1 |
| C5 |
O7 |
C8 |
C9 |
71.6 |
90.0 |
| C5 |
O7 |
C8 |
C13 |
251.6 |
269.7 |
| H6 |
C6 |
C1 |
H1 |
359.9 |
0.3 |
| C1 |
C6 |
H6 |
C5 |
180.0 |
180.1 |
| H6 |
C6 |
C5 |
O7 |
0.0 |
0.1 |
| C9 |
C8 |
O7 |
C13 |
180.0 |
180.3 |
| O7 |
C8 |
C9 |
C10 |
180.0 |
180.0 |
| O7 |
C8 |
C9 |
CL1 |
360.0 |
359.9 |
| O7 |
C8 |
C13 |
C12 |
180.0 |
179.7 |
| O7 |
C8 |
C13 |
F23 |
0.0 |
0.1 |
| O7 |
C8 |
C9 |
C13 |
180.0 |
179.7 |
| C9 |
C8 |
C13 |
C12 |
360.0 |
359.4 |
| C9 |
C8 |
C13 |
F23 |
180.0 |
179.8 |
| C10 |
C9 |
C8 |
CL1 |
180.0 |
180.0 |
| C8 |
C9 |
C10 |
C11 |
0.0 |
360.0 |
| C8 |
C9 |
C10 |
H10 |
180.0 |
179.9 |
| O7 |
C8 |
C13 |
C9 |
180.0 |
180.3 |
| C13 |
C8 |
C9 |
C10 |
0.0 |
0.3 |
| C13 |
C8 |
C9 |
CL1 |
180.0 |
180.3 |
| C11 |
C12 |
C13 |
C8 |
360.0 |
0.6 |
| C8 |
C13 |
C12 |
C30 |
180.0 |
180.3 |
| C12 |
C13 |
C8 |
F23 |
180.0 |
179.6 |
| C10 |
C9 |
C8 |
C13 |
0.0 |
0.3 |
| C8 |
C9 |
C10 |
CL1 |
180.0 |
180.0 |
| C11 |
C10 |
C9 |
H10 |
180.0 |
180.0 |
| C9 |
C10 |
C11 |
C12 |
360.0 |
0.0 |
| C9 |
C10 |
C11 |
H11 |
179.9 |
180.0 |
| CL1 |
C9 |
C8 |
C13 |
180.0 |
180.3 |
| C8 |
C9 |
CL1 |
C10 |
180.0 |
180.0 |
| CL1 |
C9 |
C10 |
C11 |
180.0 |
180.0 |
| CL1 |
C9 |
C10 |
H10 |
0.0 |
360.0 |
| C11 |
C10 |
C9 |
CL1 |
180.0 |
180.0 |
| C9 |
C10 |
C11 |
H10 |
180.0 |
180.0 |
| C12 |
C11 |
C10 |
H11 |
180.0 |
180.0 |
| C10 |
C11 |
C12 |
C13 |
0.0 |
359.7 |
| C10 |
C11 |
C12 |
C30 |
180.0 |
180.0 |
| H10 |
C10 |
C9 |
CL1 |
0.0 |
360.0 |
| C9 |
C10 |
H10 |
C11 |
180.0 |
180.0 |
| H10 |
C10 |
C11 |
C12 |
180.0 |
180.0 |
| H10 |
C10 |
C11 |
H11 |
359.9 |
360.0 |
| C8 |
C13 |
C12 |
C11 |
360.0 |
0.6 |
| C12 |
C11 |
C10 |
H10 |
180.0 |
180.0 |
| C10 |
C11 |
C12 |
H11 |
180.0 |
180.0 |
| C13 |
C12 |
C11 |
C30 |
180.0 |
179.7 |
| C11 |
C12 |
C13 |
F23 |
180.0 |
180.2 |
| C11 |
C12 |
C30 |
N20 |
223.7 |
24.9 |
| C11 |
C12 |
C30 |
C23 |
101.0 |
265.0 |
| C11 |
C12 |
C30 |
H30 |
341.9 |
145.0 |
| H11 |
C11 |
C10 |
H10 |
359.9 |
360.0 |
| C10 |
C11 |
H11 |
C12 |
180.0 |
180.0 |
| H11 |
C11 |
C12 |
C13 |
180.1 |
179.8 |
| H11 |
C11 |
C12 |
C30 |
0.0 |
0.1 |
| C8 |
C13 |
C12 |
F23 |
180.0 |
180.4 |
| C13 |
C12 |
C11 |
H11 |
180.1 |
179.8 |
| C11 |
C12 |
C13 |
C30 |
180.0 |
180.3 |
| C13 |
C12 |
C30 |
N20 |
43.7 |
205.3 |
| C13 |
C12 |
C30 |
C23 |
280.9 |
85.3 |
| C13 |
C12 |
C30 |
H30 |
161.9 |
325.3 |
| C30 |
C12 |
C11 |
H11 |
0.0 |
0.1 |
| C11 |
C12 |
C30 |
C13 |
180.0 |
179.7 |
| C30 |
C12 |
C13 |
F23 |
360.0 |
359.9 |
| C12 |
C30 |
N20 |
HN20 |
180.0 |
180.0 |
| C12 |
C30 |
N20 |
HN2A |
300.0 |
300.0 |
| C12 |
C30 |
N20 |
HN2B |
60.0 |
60.1 |
| N20 |
C30 |
C12 |
C23 |
122.8 |
119.9 |
| N20 |
C30 |
C12 |
H30 |
241.9 |
240.0 |
| C22 |
C23 |
C30 |
C12 |
301.0 |
185.0 |
| C12 |
C30 |
C23 |
H23 |
180.4 |
65.0 |
| C12 |
C30 |
C23 |
H23A |
61.6 |
304.9 |
| C23 |
C30 |
C12 |
H30 |
119.1 |
120.0 |
| C8 |
C13 |
F23 |
C12 |
180.0 |
179.6 |
| F23 |
C13 |
C12 |
C30 |
360.0 |
359.9 |
| C12 |
C30 |
N20 |
C23 |
233.9 |
240.1 |
| C12 |
C30 |
N20 |
H30 |
117.9 |
120.0 |
| HN20 |
N20 |
C30 |
HN2A |
240.0 |
240.0 |
| HN20 |
N20 |
C30 |
HN2B |
120.0 |
119.9 |
| HN2A |
N20 |
C30 |
HN2B |
240.0 |
239.9 |
| C22 |
C23 |
C30 |
N20 |
176.3 |
65.0 |
| N20 |
C30 |
C23 |
H23 |
55.7 |
305.1 |
| N20 |
C30 |
C23 |
H23A |
296.9 |
185.0 |
| C23 |
C30 |
N20 |
H30 |
244.1 |
240.0 |
| C30 |
N20 |
HN20 |
HN2A |
120.0 |
120.0 |
| C30 |
N20 |
HN20 |
HN2B |
240.0 |
240.1 |
| HN20 |
N20 |
C30 |
C23 |
306.1 |
299.9 |
| HN20 |
N20 |
C30 |
H30 |
62.1 |
60.0 |
| HN2A |
N20 |
HN20 |
HN2B |
120.0 |
120.1 |
| C30 |
N20 |
HN2A |
HN20 |
240.0 |
240.0 |
| C30 |
N20 |
HN2A |
HN2B |
120.0 |
120.0 |
| HN2A |
N20 |
C30 |
C23 |
66.2 |
60.0 |
| HN2A |
N20 |
C30 |
H30 |
182.1 |
180.0 |
| HN20 |
N20 |
HN2A |
HN2B |
240.0 |
240.0 |
| C30 |
N20 |
HN2B |
HN20 |
120.0 |
119.9 |
| C30 |
N20 |
HN2B |
HN2A |
240.0 |
240.0 |
| HN2B |
N20 |
C30 |
C23 |
186.2 |
180.0 |
| HN2B |
N20 |
C30 |
H30 |
302.1 |
300.0 |
| HN20 |
N20 |
HN2B |
HN2A |
120.0 |
120.1 |
| C12 |
C30 |
C23 |
C22 |
301.0 |
185.0 |
| N20 |
C30 |
C23 |
C22 |
176.3 |
65.0 |
| H22 |
C22 |
C23 |
H22A |
240.0 |
240.0 |
| H22 |
C22 |
C23 |
H22B |
120.0 |
120.0 |
| H22A |
C22 |
C23 |
H22B |
240.0 |
240.0 |
| C30 |
C23 |
C22 |
H23 |
239.4 |
240.0 |
| C30 |
C23 |
C22 |
H23A |
120.6 |
120.0 |
| C22 |
C23 |
C30 |
H30 |
60.1 |
305.0 |
| H23 |
C23 |
C22 |
H23A |
241.3 |
240.0 |
| C23 |
C22 |
H22 |
H22A |
120.0 |
120.0 |
| C23 |
C22 |
H22 |
H22B |
240.0 |
240.0 |
| H22 |
C22 |
C23 |
C30 |
180.0 |
300.0 |
| H22 |
C22 |
C23 |
H23 |
300.6 |
60.0 |
| H22 |
C22 |
C23 |
H23A |
59.3 |
180.0 |
| H22A |
C22 |
H22 |
H22B |
120.0 |
120.0 |
| C23 |
C22 |
H22A |
H22 |
240.0 |
240.0 |
| C23 |
C22 |
H22A |
H22B |
120.0 |
120.0 |
| H22A |
C22 |
C23 |
C30 |
300.0 |
60.0 |
| H22A |
C22 |
C23 |
H23 |
60.6 |
180.0 |
| H22A |
C22 |
C23 |
H23A |
179.3 |
300.0 |
| H22 |
C22 |
H22A |
H22B |
240.0 |
240.0 |
| C23 |
C22 |
H22B |
H22 |
120.0 |
120.0 |
| C23 |
C22 |
H22B |
H22A |
240.0 |
240.0 |
| H22B |
C22 |
C23 |
C30 |
60.0 |
180.0 |
| H22B |
C22 |
C23 |
H23 |
180.6 |
300.0 |
| H22B |
C22 |
C23 |
H23A |
299.3 |
60.0 |
| H22 |
C22 |
H22B |
H22A |
120.0 |
120.0 |
| C12 |
C30 |
C23 |
N20 |
124.7 |
119.9 |
| C12 |
C30 |
C23 |
H30 |
240.9 |
240.0 |
| C23 |
C30 |
N20 |
HN20 |
306.1 |
299.9 |
| C23 |
C30 |
N20 |
HN2A |
66.2 |
60.0 |
| C23 |
C30 |
N20 |
HN2B |
186.2 |
180.0 |
| N20 |
C30 |
C23 |
H30 |
116.2 |
120.0 |
| C30 |
C23 |
C22 |
H22 |
180.0 |
300.0 |
| C30 |
C23 |
C22 |
H22A |
300.0 |
60.0 |
| C30 |
C23 |
C22 |
H22B |
60.0 |
180.0 |
| C22 |
C23 |
C30 |
H23 |
120.6 |
120.0 |
| C22 |
C23 |
C30 |
H23A |
239.4 |
240.0 |
| H23 |
C23 |
C30 |
H23A |
118.8 |
120.1 |
| H23 |
C23 |
C22 |
H22 |
300.6 |
60.0 |
| H23 |
C23 |
C22 |
H22A |
60.6 |
180.0 |
| H23 |
C23 |
C22 |
H22B |
180.6 |
300.0 |
| C22 |
C23 |
H23 |
C30 |
236.2 |
240.0 |
| C22 |
C23 |
H23 |
H23A |
118.1 |
119.9 |
| C30 |
C23 |
H23 |
H23A |
241.9 |
239.9 |
| H23 |
C23 |
C30 |
H30 |
299.5 |
185.0 |
| H23A |
C23 |
C22 |
H22 |
59.3 |
180.0 |
| H23A |
C23 |
C22 |
H22A |
179.3 |
300.0 |
| H23A |
C23 |
C22 |
H22B |
299.3 |
60.0 |
| C22 |
C23 |
H23A |
C30 |
123.8 |
120.0 |
| C22 |
C23 |
H23A |
H23 |
241.9 |
240.1 |
| C30 |
C23 |
H23A |
H23 |
118.1 |
120.1 |
| H23A |
C23 |
C30 |
H30 |
180.7 |
65.0 |
| C12 |
C30 |
H30 |
N20 |
239.5 |
240.0 |
| C12 |
C30 |
H30 |
C23 |
123.2 |
120.0 |
| H30 |
C30 |
N20 |
HN20 |
62.1 |
60.0 |
| H30 |
C30 |
N20 |
HN2A |
182.1 |
180.0 |
| H30 |
C30 |
N20 |
HN2B |
302.1 |
300.0 |
| N20 |
C30 |
H30 |
C23 |
243.7 |
240.0 |
| H30 |
C30 |
C23 |
H23 |
299.5 |
185.0 |
| H30 |
C30 |
C23 |
H23A |
180.7 |
65.0 |