Atom Nomenclature for DIZ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for DIZ

Atom Name (V3) Atom Name (V2)
CL1 CL1
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
O1 O1
O2 O2
N1 N1
C9 C9
O3 O3
C10 C10
C11 C11
C12 C12
I1 I1
C13 C13
C14 C14
C15 C15
N2 N2
C16 C16
O4 O4
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
CL2 CL2
C22 C22
C23 C23
H2 H2
H3 H3
H5 H5
H6 H6
H7 H7
HO2 HO2
H11 H11
H13 H13
H14 H14
HN2 HN2
H17 H17
H19 H19
H20 H20
H22 H22
H23 H23