PDB Chemical Component DIY

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DIY

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.465 1.466
N1 C6 1.448 1.466
N1 HN1 1.020 1.009
C2 C3 1.516 1.530
C2 H21 1.115 1.090
C2 H22 1.115 1.090
C6 C5 1.494 1.528
C6 H61 1.116 1.089
C6 H62 1.115 1.090
C3 C4 1.523 1.531
C3 H31 1.115 1.089
C3 H32 1.115 1.090
C4 C5 1.539 1.532
C4 H41 1.114 1.090
C4 H42 1.115 1.090
C5 C1' 1.512 1.529
C5 H5 1.115 1.090
C1' C2' 1.506 1.529
C1' H1'1 1.115 1.089
C1' H1'2 1.116 1.090
C2' C3' 1.503 1.529
C2' H2'1 1.115 1.090
C2' H2'2 1.114 1.089
C3' C4' 1.496 1.529
C3' H3'1 1.115 1.091
C3' H3'2 1.115 1.090
C4' H4'1 1.116 1.090
C4' H4'2 1.116 1.090
C4' H4'3 1.115 1.090

Bond Angles for DIY

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 115.9 107.4
C2 N1 HN1 109.9 106.7
N1 C2 C3 104.8 109.8
N1 C2 H21 113.9 109.4
N1 C2 H22 113.9 109.5
C6 N1 HN1 109.8 106.7
N1 C6 C5 109.2 109.8
N1 C6 H61 112.2 109.4
N1 C6 H62 112.3 109.4
C3 C2 H21 114.0 109.4
C3 C2 H22 114.0 109.4
C2 C3 C4 109.3 109.2
C2 C3 H31 112.3 109.6
C2 C3 H32 112.2 109.4
H21 C2 H22 96.5 109.4
C5 C6 H61 112.3 109.5
C5 C6 H62 112.3 109.3
C6 C5 C4 107.3 109.2
C6 C5 C1' 112.4 109.6
C6 C5 H5 111.2 109.5
H61 C6 H62 98.1 109.3
C4 C3 H31 112.3 109.6
C4 C3 H32 112.3 109.5
C3 C4 C5 116.9 109.0
C3 C4 H41 109.5 109.5
C3 C4 H42 109.5 109.6
H31 C3 H32 98.1 109.5
C5 C4 H41 109.5 109.5
C5 C4 H42 109.5 109.6
C4 C5 C1' 115.1 109.5
C4 C5 H5 108.2 109.5
H41 C4 H42 100.7 109.6
C1' C5 H5 102.6 109.5
C5 C1' C2' 108.5 109.5
C5 C1' H1'1 112.6 109.4
C5 C1' H1'2 112.6 109.5
C2' C1' H1'1 112.6 109.5
C2' C1' H1'2 112.6 109.5
C1' C2' C3' 111.5 109.5
C1' C2' H2'1 111.4 109.5
C1' C2' H2'2 111.4 109.5
H1'1 C1' H1'2 97.8 109.5
C3' C2' H2'1 111.4 109.4
C3' C2' H2'2 111.5 109.5
C2' C3' C4' 106.5 109.6
C2' C3' H3'1 113.3 109.5
C2' C3' H3'2 113.3 109.5
H2'1 C2' H2'2 98.9 109.4
C4' C3' H3'1 113.3 109.5
C4' C3' H3'2 113.3 109.5
C3' C4' H4'1 106.6 109.6
C3' C4' H4'2 113.3 109.5
C3' C4' H4'3 113.4 109.5
H3'1 C3' H3'2 97.2 109.4
H4'1 C4' H4'2 113.3 109.5
H4'1 C4' H4'3 113.3 109.4
H4'2 C4' H4'3 97.1 109.4

Torsion Angles for DIY

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 N1 C2 HN1 125.2 245.9
C2 N1 C6 C5 66.8 294.5
C2 N1 C6 H61 192.0 174.2
C2 N1 C6 H62 301.5 54.5
C3 C2 N1 H21 234.7 120.0
C3 C2 N1 H22 125.3 239.9
N1 C2 C3 C4 54.5 298.7
N1 C2 C3 H31 179.8 178.7
N1 C2 C3 H32 289.2 58.6
H21 C2 N1 H22 250.6 119.9
C2 N1 C6 HN1 234.7 114.1
C6 N1 C2 C3 293.7 65.6
C6 N1 C2 H21 59.0 305.5
C6 N1 C2 H22 168.4 185.7
C5 C6 N1 H61 234.7 120.3
C5 C6 N1 H62 125.3 240.0
N1 C6 C5 C4 308.2 61.2
N1 C6 C5 C1' 75.7 181.2
N1 C6 C5 H5 190.1 301.4
H61 C6 N1 H62 250.6 119.7
C2 N1 HN1 C6 128.7 245.4
HN1 N1 C2 C3 168.4 179.7
HN1 N1 C2 H21 293.7 59.7
HN1 N1 C2 H22 43.2 299.8
HN1 N1 C6 C5 192.1 180.4
HN1 N1 C6 H61 317.3 60.1
HN1 N1 C6 H62 66.7 300.4
C3 C2 N1 C6 293.7 65.6
C3 C2 N1 HN1 168.4 179.7
N1 C2 C3 H21 125.2 240.0
N1 C2 C3 H22 234.8 120.1
H21 C2 C3 H22 109.6 240.2
C4 C3 C2 H31 234.7 120.0
C4 C3 C2 H32 125.2 240.1
C2 C3 C4 C5 307.7 55.5
C2 C3 C4 H41 73.0 295.7
C2 C3 C4 H42 182.5 175.4
H31 C3 C2 H32 250.5 120.1
H21 C2 N1 C6 59.0 305.5
H21 C2 N1 HN1 293.7 59.7
N1 C2 H21 C3 239.7 120.3
N1 C2 H21 H22 119.8 240.1
C3 C2 H21 H22 240.1 119.8
H21 C2 C3 C4 289.3 58.7
H21 C2 C3 H31 54.6 298.7
H21 C2 C3 H32 164.0 178.6
H22 C2 N1 C6 168.4 185.7
H22 C2 N1 HN1 43.2 299.8
N1 C2 H22 C3 120.3 239.7
N1 C2 H22 H21 240.2 119.9
C3 C2 H22 H21 119.9 240.2
H22 C2 C3 C4 179.7 178.5
H22 C2 C3 H31 305.0 58.5
H22 C2 C3 H32 54.5 298.4
C5 C6 N1 HN1 192.1 180.4
N1 C6 C5 H61 125.2 239.8
N1 C6 C5 H62 234.7 120.1
H61 C6 C5 H62 109.5 240.3
C3 C4 C5 C6 49.4 304.5
C6 C5 C4 H41 284.2 64.3
C6 C5 C4 H42 174.6 184.6
C4 C5 C6 C1' 232.5 240.0
C4 C5 C6 H5 118.1 119.9
C1' C5 C6 H5 245.6 239.9
C6 C5 C1' C2' 176.5 60.1
C6 C5 C1' H1'1 301.8 300.1
C6 C5 C1' H1'2 51.2 180.1
H61 C6 N1 HN1 317.3 60.1
N1 C6 H61 C5 236.4 120.5
N1 C6 H61 H62 118.2 240.2
C5 C6 H61 H62 241.7 119.7
H61 C6 C5 C4 183.0 181.4
H61 C6 C5 C1' 310.5 301.4
H61 C6 C5 H5 64.9 61.6
H62 C6 N1 HN1 66.7 300.4
N1 C6 H62 C5 123.6 239.7
N1 C6 H62 H61 241.8 119.8
C5 C6 H62 H61 118.2 240.1
H62 C6 C5 C4 73.5 301.2
H62 C6 C5 C1' 201.0 61.2
H62 C6 C5 H5 315.4 181.3
C4 C3 C2 H21 289.3 58.7
C4 C3 C2 H22 179.7 178.5
C2 C3 C4 H31 125.3 240.0
C2 C3 C4 H32 234.8 119.8
C6 C5 C4 C3 49.4 304.5
H31 C3 C4 H32 109.5 239.9
C5 C4 C3 H41 234.8 119.8
C5 C4 C3 H42 125.2 240.1
C3 C4 C5 C1' 283.5 184.5
C3 C4 C5 H5 169.4 64.4
H41 C4 C3 H42 250.4 120.3
H31 C3 C2 H21 54.6 298.7
H31 C3 C2 H22 305.0 58.5
C2 C3 H31 C4 236.4 119.8
C2 C3 H31 H32 118.2 239.9
C4 C3 H31 H32 241.8 120.1
H31 C3 C4 C5 182.4 175.5
H31 C3 C4 H41 307.7 55.7
H31 C3 C4 H42 57.2 295.4
H32 C3 C2 H21 164.0 178.6
H32 C3 C2 H22 54.5 298.4
C2 C3 H32 C4 123.6 240.3
C2 C3 H32 H31 241.8 120.1
C4 C3 H32 H31 118.2 239.8
H32 C3 C4 C5 73.0 295.7
H32 C3 C4 H41 198.2 175.9
H32 C3 C4 H42 307.7 55.6
C4 C5 C6 H61 183.0 181.4
C4 C5 C6 H62 73.5 301.2
C6 C5 C4 C1' 125.9 120.1
C6 C5 C4 H5 240.0 240.1
C5 C4 C3 H31 182.4 175.5
C5 C4 C3 H32 73.0 295.7
C3 C4 C5 H41 125.2 240.2
C3 C4 C5 H42 234.8 119.9
H41 C4 C5 H42 109.5 239.7
C1' C5 C4 H5 114.1 120.0
C4 C5 C1' C2' 299.7 179.9
C4 C5 C1' H1'1 65.0 60.0
C4 C5 C1' H1'2 174.4 299.9
H41 C4 C3 H31 307.7 55.7
H41 C4 C3 H32 198.2 175.9
C3 C4 H41 C5 230.6 119.5
C3 C4 H41 H42 115.3 239.7
C5 C4 H41 H42 244.7 120.3
H41 C4 C5 C1' 158.3 304.3
H41 C4 C5 H5 44.2 184.2
H42 C4 C3 H31 57.2 295.4
H42 C4 C3 H32 307.7 55.6
C3 C4 H42 C5 129.4 240.5
C3 C4 H42 H41 244.7 120.3
C5 C4 H42 H41 115.3 239.8
H42 C4 C5 C1' 48.7 64.6
H42 C4 C5 H5 294.7 304.6
C1' C5 C6 H61 310.5 301.4
C1' C5 C6 H62 201.0 61.2
C6 C5 C1' C4 236.8 240.2
C6 C5 C1' H5 119.5 120.1
C1' C5 C4 H41 158.3 304.3
C1' C5 C4 H42 48.7 64.6
C4 C5 C1' H5 242.7 240.0
C2' C1' C5 H1'1 234.7 120.0
C2' C1' C5 H1'2 125.3 240.0
C5 C1' C2' C3' 161.9 180.0
C5 C1' C2' H2'1 287.1 60.1
C5 C1' C2' H2'2 36.6 300.1
H1'1 C1' C5 H1'2 250.6 120.0
H5 C5 C6 H61 64.9 61.6
H5 C5 C6 H62 315.4 181.3
C6 C5 H5 C4 117.6 119.7
C6 C5 H5 C1' 239.6 239.8
H5 C5 C4 H41 44.2 184.2
H5 C5 C4 H42 294.7 304.6
C4 C5 H5 C1' 122.1 120.1
H5 C5 C1' C2' 57.0 299.9
H5 C5 C1' H1'1 182.3 180.0
H5 C5 C1' H1'2 291.7 60.0
C2' C1' C5 H5 57.0 299.9
C5 C1' C2' H1'1 125.3 240.1
C5 C1' C2' H1'2 234.7 120.0
H1'1 C1' C2' H1'2 109.4 240.0
C3' C2' C1' H2'1 234.7 120.0
C3' C2' C1' H2'2 125.3 239.9
C1' C2' C3' C4' 62.1 180.0
C1' C2' C3' H3'1 187.4 60.0
C1' C2' C3' H3'2 296.9 300.1
H2'1 C2' C1' H2'2 250.5 120.0
H1'1 C1' C5 H5 182.3 180.0
C5 C1' H1'1 C2' 237.0 120.0
C5 C1' H1'1 H1'2 118.5 240.0
C2' C1' H1'1 H1'2 241.5 120.0
H1'1 C1' C2' C3' 36.6 300.0
H1'1 C1' C2' H2'1 161.8 180.0
H1'1 C1' C2' H2'2 271.3 60.0
H1'2 C1' C5 H5 291.7 60.0
C5 C1' H1'2 C2' 123.0 240.0
C5 C1' H1'2 H1'1 241.5 120.0
C2' C1' H1'2 H1'1 118.5 240.0
H1'2 C1' C2' C3' 287.2 60.0
H1'2 C1' C2' H2'1 52.4 300.0
H1'2 C1' C2' H2'2 161.9 180.0
C3' C2' C1' H1'1 36.6 300.0
C3' C2' C1' H1'2 287.2 60.0
C1' C2' C3' H2'1 125.3 240.0
C1' C2' C3' H2'2 234.8 120.1
H2'1 C2' C3' H2'2 109.5 240.1
C4' C3' C2' H3'1 234.8 120.0
C4' C3' C2' H3'2 125.2 239.9
C2' C3' C4' H4'1 180.0 180.0
C2' C3' C4' H4'2 305.2 300.0
C2' C3' C4' H4'3 54.7 60.0
H3'1 C3' C2' H3'2 250.4 119.9
H2'1 C2' C1' H1'1 161.8 180.0
H2'1 C2' C1' H1'2 52.4 300.0
C1' C2' H2'1 C3' 234.7 120.0
C1' C2' H2'1 H2'2 117.3 240.0
C3' C2' H2'1 H2'2 242.6 120.0
H2'1 C2' C3' C4' 296.9 300.0
H2'1 C2' C3' H3'1 62.1 180.0
H2'1 C2' C3' H3'2 171.7 60.1
H2'2 C2' C1' H1'1 271.3 60.0
H2'2 C2' C1' H1'2 161.9 180.0
C1' C2' H2'2 C3' 125.3 239.9
C1' C2' H2'2 H2'1 242.7 120.0
C3' C2' H2'2 H2'1 117.4 240.1
H2'2 C2' C3' C4' 187.4 59.9
H2'2 C2' C3' H3'1 312.6 299.9
H2'2 C2' C3' H3'2 62.2 180.0
C4' C3' C2' H2'1 296.9 300.0
C4' C3' C2' H2'2 187.4 59.9
C2' C3' C4' H3'1 125.3 239.9
C2' C3' C4' H3'2 234.7 120.1
H3'1 C3' C4' H3'2 109.5 240.2
H4'1 C4' C3' H4'2 234.8 239.9
H4'1 C4' C3' H4'3 125.3 120.0
H4'2 C4' C3' H4'3 250.5 240.0
H3'1 C3' C2' H2'1 62.1 180.0
H3'1 C3' C2' H2'2 312.6 299.9
C2' C3' H3'1 C4' 238.5 120.1
C2' C3' H3'1 H3'2 119.3 240.0
C4' C3' H3'1 H3'2 240.8 119.9
H3'1 C3' C4' H4'1 54.7 300.0
H3'1 C3' C4' H4'2 180.0 60.1
H3'1 C3' C4' H4'3 289.5 180.0
H3'2 C3' C2' H2'1 171.7 60.1
H3'2 C3' C2' H2'2 62.2 180.0
C2' C3' H3'2 C4' 121.5 239.9
C2' C3' H3'2 H3'1 240.7 120.0
C4' C3' H3'2 H3'1 119.2 240.1
H3'2 C3' C4' H4'1 305.3 59.9
H3'2 C3' C4' H4'2 70.5 179.9
H3'2 C3' C4' H4'3 180.0 299.9
H4'1 C4' C3' H3'1 54.7 300.0
H4'1 C4' C3' H3'2 305.3 59.9
C3' C4' H4'1 H4'2 125.3 120.1
C3' C4' H4'1 H4'3 234.7 240.0
H4'2 C4' H4'1 H4'3 109.4 119.9
H4'2 C4' C3' H3'1 180.0 60.1
H4'2 C4' C3' H3'2 70.5 179.9
C3' C4' H4'2 H4'1 238.4 239.9
C3' C4' H4'2 H4'3 119.3 120.0
H4'1 C4' H4'2 H4'3 240.8 240.1
H4'3 C4' C3' H3'1 289.5 180.0
H4'3 C4' C3' H3'2 180.0 299.9
C3' C4' H4'3 H4'1 121.6 120.1
C3' C4' H4'3 H4'2 240.7 240.0
H4'1 C4' H4'3 H4'2 119.1 119.9