PDB Chemical Component DIX

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DIX

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CM 1.453 1.468
N C3 1.463 1.468
N HN 1.020 1.009
CM HM1 1.116 1.089
CM HM2 1.115 1.090
CM HM3 1.115 1.090
C3 C2 1.553 1.529
C3 H31 1.116 1.089
C3 H32 1.115 1.091
C2 C1 1.510 1.528
C2 H21 1.115 1.091
C2 H22 1.115 1.091
C1 C1' 1.491 1.530
C1 H11 1.115 1.089
C1 H12 1.115 1.090
C1' C2' 1.470 1.539
C1' C5' 1.495 1.542
C1' H1' 1.115 1.090
C2' C3' 1.490 1.542
C2' H2'1 1.116 1.089
C2' H2'2 1.116 1.090
C5' C4' 1.517 1.549
C5' H5'1 1.115 1.089
C5' H5'2 1.115 1.090
C4' C3' 1.476 1.548
C4' H4'1 1.114 1.089
C4' H4'2 1.115 1.090
C3' H3'1 1.115 1.089
C3' H3'2 1.115 1.090

Bond Angles for DIX

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CM N C3 113.7 106.7
CM N HN 110.7 106.7
N CM HM1 113.6 109.6
N CM HM2 110.6 109.5
N CM HM3 110.7 109.4
C3 N HN 110.7 106.7
N C3 C2 110.2 109.5
N C3 H31 111.9 109.5
N C3 H32 112.0 109.4
HM1 CM HM2 110.7 109.5
HM1 CM HM3 110.7 109.4
HM2 CM HM3 99.7 109.5
C2 C3 H31 111.9 109.5
C2 C3 H32 112.0 109.4
C3 C2 C1 119.1 109.5
C3 C2 H21 108.8 109.5
C3 C2 H22 108.7 109.5
H31 C3 H32 98.5 109.5
C1 C2 H21 108.7 109.5
C1 C2 H22 108.7 109.4
C2 C1 C1' 110.6 109.5
C2 C1 H11 111.8 109.5
C2 C1 H12 111.8 109.4
H21 C2 H22 101.3 109.4
C1' C1 H11 111.8 109.5
C1' C1 H12 111.8 109.4
C1 C1' C2' 117.0 110.1
C1 C1' C5' 114.3 110.1
C1 C1' H1' 99.3 110.0
H11 C1 H12 98.6 109.5
C2' C1' C5' 106.7 106.6
C2' C1' H1' 108.1 110.0
C1' C2' C3' 99.2 106.6
C1' C2' H2'1 116.2 110.1
C1' C2' H2'2 116.2 110.0
C5' C1' H1' 111.1 110.0
C1' C5' C4' 102.5 104.2
C1' C5' H5'1 114.8 110.5
C1' C5' H5'2 114.8 110.5
C3' C2' H2'1 116.2 110.0
C3' C2' H2'2 116.2 110.1
C2' C3' C4' 103.3 104.2
C2' C3' H3'1 114.5 110.5
C2' C3' H3'2 114.6 110.4
H2'1 C2' H2'2 94.2 110.0
C4' C5' H5'1 114.9 110.6
C4' C5' H5'2 114.9 110.4
C5' C4' C3' 106.1 102.7
C5' C4' H4'1 113.5 110.9
C5' C4' H4'2 113.5 110.7
H5'1 C5' H5'2 95.6 110.6
C3' C4' H4'1 113.5 110.7
C3' C4' H4'2 113.4 110.7
C4' C3' H3'1 114.6 110.5
C4' C3' H3'2 114.6 110.5
H4'1 C4' H4'2 97.0 110.8
H3'1 C3' H3'2 95.9 110.5

Torsion Angles for DIX

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C3 N CM HN 125.3 246.2
CM N C3 C2 76.0 180.0
CM N C3 H31 201.2 300.1
CM N C3 H32 310.7 60.1
HM1 CM N HM2 234.8 240.0
HM1 CM N HM3 125.3 119.9
HM2 CM N HM3 250.5 240.0
CM N C3 HN 234.7 113.8
C3 N CM HM1 180.0 179.9
C3 N CM HM2 305.3 300.0
C3 N CM HM3 54.8 60.0
C2 C3 N H31 234.8 239.9
C2 C3 N H32 125.3 119.9
N C3 C2 C1 70.8 180.0
N C3 C2 H21 196.0 300.1
N C3 C2 H22 305.5 60.0
H31 C3 N H32 250.5 240.0
CM N HN C3 127.0 246.2
HN N CM HM1 54.7 293.8
HN N CM HM2 180.0 53.8
HN N CM HM3 289.5 173.8
HN N C3 C2 201.3 66.1
HN N C3 H31 326.5 186.2
HN N C3 H32 76.0 306.2
HM1 CM N C3 180.0 179.9
HM1 CM N HN 54.7 293.8
N CM HM1 HM2 125.2 120.1
N CM HM1 HM3 234.8 240.0
HM2 CM HM1 HM3 109.6 120.0
HM2 CM N C3 305.3 300.0
HM2 CM N HN 180.0 53.8
N CM HM2 HM1 233.1 239.9
N CM HM2 HM3 116.5 120.0
HM1 CM HM2 HM3 243.4 240.1
HM3 CM N C3 54.8 60.0
HM3 CM N HN 289.5 173.8
N CM HM3 HM1 126.9 120.0
N CM HM3 HM2 243.5 240.0
HM1 CM HM3 HM2 116.6 120.0
C2 C3 N HN 201.3 66.1
N C3 C2 H31 125.2 120.1
N C3 C2 H32 234.7 240.1
H31 C3 C2 H32 109.5 120.0
C1 C2 C3 H21 234.8 239.9
C1 C2 C3 H22 125.3 120.0
C3 C2 C1 C1' 183.3 180.0
C3 C2 C1 H11 308.6 300.0
C3 C2 C1 H12 58.1 60.1
H21 C2 C3 H22 250.5 240.0
H31 C3 N HN 326.5 186.2
N C3 H31 C2 235.7 239.9
N C3 H31 H32 117.9 120.0
C2 C3 H31 H32 242.1 240.1
H31 C3 C2 C1 305.5 59.9
H31 C3 C2 H21 70.8 180.0
H31 C3 C2 H22 180.3 299.9
H32 C3 N HN 76.0 306.2
N C3 H32 C2 124.3 120.0
N C3 H32 H31 242.2 240.0
C2 C3 H32 H31 117.9 120.0
H32 C3 C2 C1 196.1 300.0
H32 C3 C2 H21 321.3 60.0
H32 C3 C2 H22 70.8 180.0
C1 C2 C3 H31 305.5 59.9
C1 C2 C3 H32 196.1 300.0
C3 C2 C1 H21 125.3 120.0
C3 C2 C1 H22 234.7 240.0
H21 C2 C1 H22 109.5 120.0
C1' C1 C2 H11 234.7 239.9
C1' C1 C2 H12 125.3 119.9
C2 C1 C1' C2' 176.4 180.0
C2 C1 C1' C5' 50.6 297.2
C2 C1 C1' H1' 292.2 58.6
H11 C1 C2 H12 250.6 240.0
H21 C2 C3 H31 70.8 180.0
H21 C2 C3 H32 321.3 60.0
C3 C2 H21 C1 228.9 239.9
C3 C2 H21 H22 114.4 120.0
C1 C2 H21 H22 245.6 240.0
H21 C2 C1 C1' 58.1 59.9
H21 C2 C1 H11 183.4 180.0
H21 C2 C1 H12 292.8 300.0
H22 C2 C3 H31 180.3 299.9
H22 C2 C3 H32 70.8 180.0
C3 C2 H22 C1 131.1 120.1
C3 C2 H22 H21 245.5 240.0
C1 C2 H22 H21 114.4 120.0
H22 C2 C1 C1' 308.6 300.0
H22 C2 C1 H11 73.9 60.1
H22 C2 C1 H12 183.3 180.1
C1' C1 C2 H21 58.1 59.9
C1' C1 C2 H22 308.6 300.0
C2 C1 C1' H11 125.3 120.1
C2 C1 C1' H12 234.7 240.1
H11 C1 C1' H12 109.4 120.0
C2' C1' C1 C5' 125.8 242.8
C2' C1' C1 H1' 244.1 121.4
C1 C1' C2' C3' 187.1 119.4
C1 C1' C2' H2'1 312.4 238.7
C1 C1' C2' H2'2 61.8 0.0
C5' C1' C1 H1' 118.4 238.6
C1 C1' C5' C4' 154.9 217.0
C1 C1' C5' H5'1 280.2 335.8
C1 C1' C5' H5'2 29.6 98.4
H11 C1 C2 H21 183.4 180.0
H11 C1 C2 H22 73.9 60.1
C2 C1 H11 C1' 235.3 239.9
C2 C1 H11 H12 117.7 120.0
C1' C1 H11 H12 242.3 240.1
H11 C1 C1' C2' 51.1 59.9
H11 C1 C1' C5' 285.3 177.1
H11 C1 C1' H1' 166.9 298.5
H12 C1 C2 H21 292.8 300.0
H12 C1 C2 H22 183.3 180.1
C2 C1 H12 C1' 124.6 120.0
C2 C1 H12 H11 242.3 239.9
C1' C1 H12 H11 117.7 120.0
H12 C1 C1' C2' 301.6 300.0
H12 C1 C1' C5' 175.9 57.2
H12 C1 C1' H1' 57.5 178.6
C2' C1' C1 H11 51.1 59.9
C2' C1' C1 H12 301.6 300.0
C1 C1' C2' C5' 230.5 119.3
C1 C1' C2' H1' 110.9 238.6
C5' C1' C2' H1' 240.4 119.3
C2' C1' C5' C4' 24.0 336.4
C2' C1' C5' H5'1 149.2 95.1
C2' C1' C5' H5'2 258.7 217.8
C3' C2' C1' H2'1 234.7 240.7
C3' C2' C1' H2'2 125.3 119.3
C1' C2' C3' C4' 45.8 23.6
C1' C2' C3' H3'1 171.0 142.4
C1' C2' C3' H3'2 280.5 265.0
H2'1 C2' C1' H2'2 250.6 238.6
C5' C1' C1 H11 285.3 177.1
C5' C1' C1 H12 175.9 57.2
C1 C1' C5' C2' 131.0 240.6
C1 C1' C5' H1' 248.6 121.4
C2' C1' C5' H1' 117.6 240.8
C5' C1' C2' C3' 316.6 0.0
C5' C1' C2' H2'1 81.9 119.3
C5' C1' C2' H2'2 191.3 240.7
C4' C5' C1' H5'1 234.8 241.2
C4' C5' C1' H5'2 125.3 118.6
C1' C5' C4' C3' 5.4 38.0
C1' C5' C4' H4'1 130.7 279.7
C1' C5' C4' H4'2 240.2 156.2
H5'1 C5' C1' H5'2 250.5 237.4
H1' C1' C1 H11 166.9 298.5
H1' C1' C1 H12 57.5 178.6
C1 C1' H1' C2' 237.5 121.4
C1 C1' H1' C5' 120.7 238.6
C2' C1' H1' C5' 243.2 117.1
H1' C1' C2' C3' 76.2 240.7
H1' C1' C2' H2'1 201.5 0.0
H1' C1' C2' H2'2 310.9 121.4
H1' C1' C5' C4' 266.3 95.6
H1' C1' C5' H5'1 31.6 214.4
H1' C1' C5' H5'2 141.1 337.0
C3' C2' C1' C5' 316.6 0.0
C3' C2' C1' H1' 76.2 240.7
C1' C2' C3' H2'1 125.3 119.3
C1' C2' C3' H2'2 234.7 240.8
H2'1 C2' C3' H2'2 109.4 121.4
C5' C4' C3' C2' 327.8 322.0
C2' C3' C4' H4'1 202.5 80.4
C2' C3' C4' H4'2 93.1 203.7
C4' C3' C2' H3'1 234.7 241.3
C4' C3' C2' H3'2 125.3 118.7
H3'1 C3' C2' H3'2 250.5 237.4
H2'1 C2' C1' C5' 81.9 119.3
H2'1 C2' C1' H1' 201.5 0.0
C1' C2' H2'1 C3' 243.9 242.8
C1' C2' H2'1 H2'2 121.9 121.3
C3' C2' H2'1 H2'2 238.0 238.5
H2'1 C2' C3' C4' 280.5 264.3
H2'1 C2' C3' H3'1 45.7 23.0
H2'1 C2' C3' H3'2 155.2 145.6
H2'2 C2' C1' C5' 191.3 240.7
H2'2 C2' C1' H1' 310.9 121.4
C1' C2' H2'2 C3' 116.1 117.2
C1' C2' H2'2 H2'1 238.0 238.6
C3' C2' H2'2 H2'1 121.9 121.4
H2'2 C2' C3' C4' 171.1 142.9
H2'2 C2' C3' H3'1 296.3 261.6
H2'2 C2' C3' H3'2 45.8 24.2
C4' C5' C1' H1' 266.3 95.6
C1' C5' C4' H5'1 125.2 118.7
C1' C5' C4' H5'2 234.8 241.4
C2' C3' C4' C5' 327.8 322.0
H5'1 C5' C4' H5'2 109.5 122.7
C3' C4' C5' H4'1 234.7 118.3
C3' C4' C5' H4'2 125.2 241.7
C5' C4' C3' H3'1 202.6 203.3
C5' C4' C3' H3'2 93.1 80.7
H4'1 C4' C5' H4'2 250.5 123.4
H5'1 C5' C1' H1' 31.6 214.4
C1' C5' H5'1 C4' 241.5 245.2
C1' C5' H5'1 H5'2 120.7 122.6
C4' C5' H5'1 H5'2 239.2 237.4
H5'1 C5' C4' C3' 240.2 279.3
H5'1 C5' C4' H4'1 5.4 161.0
H5'1 C5' C4' H4'2 115.0 37.5
H5'2 C5' C1' H1' 141.1 337.0
C1' C5' H5'2 C4' 118.5 114.7
C1' C5' H5'2 H5'1 239.3 237.4
C4' C5' H5'2 H5'1 120.8 122.7
H5'2 C5' C4' C3' 130.7 156.6
H5'2 C5' C4' H4'1 255.9 38.3
H5'2 C5' C4' H4'2 5.5 274.9
C4' C3' C2' H2'1 280.5 264.3
C4' C3' C2' H2'2 171.1 142.9
C2' C3' C4' H3'1 125.2 118.7
C2' C3' C4' H3'2 234.7 241.4
C3' C4' C5' H5'1 240.2 279.3
C3' C4' C5' H5'2 130.7 156.6
C5' C4' C3' H4'1 125.3 241.6
C5' C4' C3' H4'2 234.7 118.3
H4'1 C4' C3' H4'2 109.5 236.7
H3'1 C3' C4' H3'2 109.5 122.7
H4'1 C4' C5' H5'1 5.4 161.0
H4'1 C4' C5' H5'2 255.9 38.3
C5' C4' H4'1 C3' 238.8 113.4
C5' C4' H4'1 H4'2 119.4 236.6
C3' C4' H4'1 H4'2 240.7 123.3
H4'1 C4' C3' H3'1 77.3 321.7
H4'1 C4' C3' H3'2 327.8 199.1
H4'2 C4' C5' H5'1 115.0 37.5
H4'2 C4' C5' H5'2 5.5 274.9
C5' C4' H4'2 C3' 121.2 246.7
C5' C4' H4'2 H4'1 240.5 123.4
C3' C4' H4'2 H4'1 119.4 236.7
H4'2 C4' C3' H3'1 327.8 85.0
H4'2 C4' C3' H3'2 218.3 322.4
H3'1 C3' C2' H2'1 45.7 23.0
H3'1 C3' C2' H2'2 296.3 261.6
C2' C3' H3'1 C4' 240.9 245.2
C2' C3' H3'1 H3'2 120.4 122.6
H3'1 C3' C4' H4'1 77.3 321.7
H3'1 C3' C4' H4'2 327.8 85.0
C4' C3' H3'1 H3'2 239.5 237.4
H3'2 C3' C2' H2'1 155.2 145.6
H3'2 C3' C2' H2'2 45.8 24.2
C2' C3' H3'2 C4' 119.1 114.8
C2' C3' H3'2 H3'1 239.6 237.4
H3'2 C3' C4' H4'1 327.8 199.1
H3'2 C3' C4' H4'2 218.3 322.4
C4' C3' H3'2 H3'1 120.5 122.6