PDB Chemical Component DIP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DIP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N C1 1.468 1.468
N C1' 1.472 1.468
N HN 1.020 1.008
C1 C2 1.516 1.529
C1 H11 1.115 1.089
C1 H12 1.114 1.090
C2 C3 1.503 1.530
C2 H21 1.115 1.090
C2 H22 1.115 1.090
C3 C4 1.515 1.529
C3 H31 1.114 1.090
C3 H32 1.114 1.090
C4 C5 1.532 1.530
C4 H41 1.115 1.088
C4 H42 1.114 1.090
C5 H51 1.115 1.089
C5 H52 1.114 1.090
C5 H53 1.116 1.090
C1' C2' 1.542 1.529
C1' H1'1 1.116 1.089
C1' H1'2 1.115 1.090
C2' C3' 1.539 1.530
C2' H2'1 1.115 1.090
C2' H2'2 1.114 1.090
C3' C4' 1.504 1.529
C3' H3'1 1.116 1.090
C3' H3'2 1.116 1.090
C4' C5' 1.512 1.530
C4' H4'1 1.115 1.088
C4' H4'2 1.115 1.090
C5' H5'1 1.114 1.089
C5' H5'2 1.115 1.090
C5' H5'3 1.115 1.090

Bond Angles for DIP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C1 N C1' 120.0 106.7
C1 N HN 108.5 106.7
N C1 C2 102.3 109.5
N C1 H11 114.9 109.5
N C1 H12 114.9 109.5
C1' N HN 108.4 106.7
N C1' C2' 108.6 109.5
N C1' H1'1 112.5 109.5
N C1' H1'2 112.6 109.5
C2 C1 H11 115.0 109.5
C2 C1 H12 115.0 109.4
C1 C2 C3 109.7 109.5
C1 C2 H21 112.1 109.5
C1 C2 H22 112.1 109.5
H11 C1 H12 95.5 109.5
C3 C2 H21 112.2 109.4
C3 C2 H22 112.2 109.4
C2 C3 C4 107.9 109.5
C2 C3 H31 112.8 109.5
C2 C3 H32 112.8 109.5
H21 C2 H22 98.2 109.5
C4 C3 H31 112.8 109.5
C4 C3 H32 112.8 109.4
C3 C4 C5 113.2 109.5
C3 C4 H41 110.8 109.5
C3 C4 H42 110.9 109.4
H31 C3 H32 97.7 109.4
C5 C4 H41 110.8 109.5
C5 C4 H42 110.9 109.4
C4 C5 H51 113.2 109.6
C4 C5 H52 110.9 109.4
C4 C5 H53 110.9 109.5
H41 C4 H42 99.5 109.5
H51 C5 H52 110.9 109.4
H51 C5 H53 110.8 109.5
H52 C5 H53 99.4 109.5
C2' C1' H1'1 112.5 109.5
C2' C1' H1'2 112.5 109.4
C1' C2' C3' 116.1 109.5
C1' C2' H2'1 109.8 109.5
C1' C2' H2'2 109.8 109.5
H1'1 C1' H1'2 97.9 109.5
C3' C2' H2'1 109.8 109.4
C3' C2' H2'2 109.8 109.4
C2' C3' C4' 104.8 109.5
C2' C3' H3'1 114.0 109.5
C2' C3' H3'2 114.0 109.5
H2'1 C2' H2'2 100.4 109.5
C4' C3' H3'1 114.0 109.5
C4' C3' H3'2 114.0 109.4
C3' C4' C5' 108.9 109.5
C3' C4' H4'1 112.4 109.5
C3' C4' H4'2 112.4 109.4
H3'1 C3' H3'2 96.5 109.4
C5' C4' H4'1 112.4 109.5
C5' C4' H4'2 112.4 109.4
C4' C5' H5'1 108.9 109.6
C4' C5' H5'2 112.4 109.5
C4' C5' H5'3 112.4 109.4
H4'1 C4' H4'2 98.1 109.5
H5'1 C5' H5'2 112.4 109.5
H5'1 C5' H5'3 112.5 109.4
H5'2 C5' H5'3 98.0 109.5

Torsion Angles for DIP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C1' N C1 HN 125.2 246.2
C1 N C1' C2' 68.2 180.0
C1 N C1' H1'1 193.4 300.0
C1 N C1' H1'2 302.9 60.0
C2 C1 N H11 234.7 120.0
C2 C1 N H12 125.3 240.1
N C1 C2 C3 187.6 180.0
N C1 C2 H21 312.9 59.9
N C1 C2 H22 62.3 299.9
H11 C1 N H12 250.6 120.0
C1 N C1' HN 234.7 113.8
C1' N C1 C2 100.7 180.0
C1' N C1 H11 225.9 60.0
C1' N C1 H12 335.4 300.0
C2' C1' N H1'1 234.7 240.0
C2' C1' N H1'2 125.3 119.9
N C1' C2' C3' 78.9 180.0
N C1' C2' H2'1 204.1 300.1
N C1' C2' H2'2 313.6 60.1
H1'1 C1' N H1'2 250.5 240.0
C1 N HN C1' 131.8 246.2
HN N C1 C2 335.4 293.8
HN N C1 H11 100.7 173.8
HN N C1 H12 210.1 53.8
HN N C1' C2' 193.5 66.2
HN N C1' H1'1 318.7 186.2
HN N C1' H1'2 68.2 306.2
C2 C1 N C1' 100.7 180.0
C2 C1 N HN 335.4 293.8
N C1 C2 H11 125.2 240.0
N C1 C2 H12 234.7 120.0
H11 C1 C2 H12 109.5 240.0
C3 C2 C1 H21 234.7 120.1
C3 C2 C1 H22 125.3 240.1
C1 C2 C3 C4 203.8 180.0
C1 C2 C3 H31 329.1 59.9
C1 C2 C3 H32 78.5 300.0
H21 C2 C1 H22 250.6 120.0
H11 C1 N C1' 225.9 60.0
H11 C1 N HN 100.7 173.8
N C1 H11 C2 241.7 120.0
N C1 H11 H12 120.8 240.0
C2 C1 H11 H12 239.1 120.0
H11 C1 C2 C3 62.4 300.0
H11 C1 C2 H21 187.7 180.0
H11 C1 C2 H22 297.1 60.0
H12 C1 N C1' 335.4 300.0
H12 C1 N HN 210.1 53.8
N C1 H12 C2 118.4 240.0
N C1 H12 H11 239.2 120.0
C2 C1 H12 H11 120.9 240.0
H12 C1 C2 C3 312.9 60.0
H12 C1 C2 H21 78.2 300.0
H12 C1 C2 H22 187.6 180.0
C3 C2 C1 H11 62.4 300.0
C3 C2 C1 H12 312.9 60.0
C1 C2 C3 H21 125.3 239.9
C1 C2 C3 H22 234.7 120.0
H21 C2 C3 H22 109.5 240.1
C4 C3 C2 H31 234.7 120.1
C4 C3 C2 H32 125.3 240.0
C2 C3 C4 C5 300.0 180.0
C2 C3 C4 H41 65.2 59.9
C2 C3 C4 H42 174.7 300.0
H31 C3 C2 H32 250.5 119.9
H21 C2 C1 H11 187.7 180.0
H21 C2 C1 H12 78.2 300.0
C1 C2 H21 C3 236.1 120.1
C1 C2 H21 H22 118.0 240.0
C3 C2 H21 H22 241.9 119.9
H21 C2 C3 C4 78.5 300.1
H21 C2 C3 H31 203.8 180.0
H21 C2 C3 H32 313.3 60.1
H22 C2 C1 H11 297.1 60.0
H22 C2 C1 H12 187.6 180.0
C1 C2 H22 C3 123.9 240.0
C1 C2 H22 H21 242.0 120.1
C3 C2 H22 H21 118.1 240.1
H22 C2 C3 C4 329.1 60.0
H22 C2 C3 H31 94.3 299.9
H22 C2 C3 H32 203.8 180.0
C4 C3 C2 H21 78.5 300.1
C4 C3 C2 H22 329.1 60.0
C2 C3 C4 H31 125.3 239.9
C2 C3 C4 H32 234.7 120.0
H31 C3 C4 H32 109.5 240.1
C5 C4 C3 H41 234.8 120.1
C5 C4 C3 H42 125.3 240.1
C3 C4 C5 H51 180.0 180.0
C3 C4 C5 H52 305.3 300.0
C3 C4 C5 H53 54.7 59.9
H41 C4 C3 H42 250.5 120.0
H31 C3 C2 H21 203.8 180.0
H31 C3 C2 H22 94.3 299.9
C2 C3 H31 C4 237.4 120.1
C2 C3 H31 H32 118.7 240.0
C4 C3 H31 H32 241.3 119.9
H31 C3 C4 C5 174.7 300.1
H31 C3 C4 H41 300.0 180.0
H31 C3 C4 H42 49.4 60.0
H32 C3 C2 H21 313.3 60.1
H32 C3 C2 H22 203.8 180.0
C2 C3 H32 C4 122.6 240.0
C2 C3 H32 H31 241.3 120.0
C4 C3 H32 H31 118.7 240.0
H32 C3 C4 C5 65.2 60.1
H32 C3 C4 H41 190.5 299.9
H32 C3 C4 H42 299.9 180.0
C5 C4 C3 H31 174.7 300.1
C5 C4 C3 H32 65.2 60.1
C3 C4 C5 H41 125.3 239.9
C3 C4 C5 H42 234.7 119.9
H41 C4 C5 H42 109.5 240.0
H51 C5 C4 H52 234.6 240.1
H51 C5 C4 H53 125.2 120.2
H52 C5 C4 H53 250.6 240.1
H41 C4 C3 H31 300.0 180.0
H41 C4 C3 H32 190.5 299.9
C3 C4 H41 C5 233.4 120.1
C3 C4 H41 H42 116.7 240.1
C5 C4 H41 H42 243.3 119.9
H41 C4 C5 H51 54.7 300.1
H41 C4 C5 H52 180.1 60.1
H41 C4 C5 H53 289.5 180.0
H42 C4 C3 H31 49.4 60.0
H42 C4 C3 H32 299.9 180.0
C3 C4 H42 C5 126.6 240.0
C3 C4 H42 H41 243.3 120.0
C5 C4 H42 H41 116.7 240.0
H42 C4 C5 H51 305.3 60.1
H42 C4 C5 H52 70.6 180.0
H42 C4 C5 H53 180.0 299.9
H51 C5 C4 H41 54.7 300.1
H51 C5 C4 H42 305.3 60.1
C4 C5 H51 H52 125.4 119.9
C4 C5 H51 H53 234.8 239.9
H52 C5 H51 H53 109.4 120.0
H52 C5 C4 H41 180.1 60.1
H52 C5 C4 H42 70.6 180.0
C4 C5 H52 H51 233.3 240.0
C4 C5 H52 H53 116.7 119.9
H51 C5 H52 H53 243.4 240.0
H53 C5 C4 H41 289.5 180.0
H53 C5 C4 H42 180.0 299.9
C4 C5 H53 H51 126.6 120.2
C4 C5 H53 H52 243.3 240.1
H51 C5 H53 H52 116.7 120.0
C2' C1' N HN 193.5 66.2
N C1' C2' H1'1 125.3 120.0
N C1' C2' H1'2 234.7 240.0
H1'1 C1' C2' H1'2 109.4 120.0
C3' C2' C1' H2'1 234.8 239.9
C3' C2' C1' H2'2 125.3 119.9
C1' C2' C3' C4' 192.0 180.0
C1' C2' C3' H3'1 317.3 300.1
C1' C2' C3' H3'2 66.7 60.0
H2'1 C2' C1' H2'2 250.5 240.0
H1'1 C1' N HN 318.7 186.2
N C1' H1'1 C2' 236.9 240.0
N C1' H1'1 H1'2 118.5 120.0
C2' C1' H1'1 H1'2 241.6 240.0
H1'1 C1' C2' C3' 313.6 60.0
H1'1 C1' C2' H2'1 78.8 180.0
H1'1 C1' C2' H2'2 188.3 300.0
H1'2 C1' N HN 68.2 306.2
N C1' H1'2 C2' 123.1 120.0
N C1' H1'2 H1'1 241.6 240.0
C2' C1' H1'2 H1'1 118.4 120.0
H1'2 C1' C2' C3' 204.2 300.0
H1'2 C1' C2' H2'1 329.4 60.0
H1'2 C1' C2' H2'2 78.9 180.0
C3' C2' C1' H1'1 313.6 60.0
C3' C2' C1' H1'2 204.2 300.0
C1' C2' C3' H2'1 125.2 120.1
C1' C2' C3' H2'2 234.7 240.0
H2'1 C2' C3' H2'2 109.5 119.9
C4' C3' C2' H3'1 234.7 239.9
C4' C3' C2' H3'2 125.3 120.0
C2' C3' C4' C5' 173.2 180.0
C2' C3' C4' H4'1 298.4 300.1
C2' C3' C4' H4'2 48.0 60.0
H3'1 C3' C2' H3'2 250.6 240.1
H2'1 C2' C1' H1'1 78.8 180.0
H2'1 C2' C1' H1'2 329.4 60.0
C1' C2' H2'1 C3' 231.2 239.9
C1' C2' H2'1 H2'2 115.6 120.0
C3' C2' H2'1 H2'2 244.4 240.1
H2'1 C2' C3' C4' 66.8 59.9
H2'1 C2' C3' H3'1 192.1 180.0
H2'1 C2' C3' H3'2 301.5 299.9
H2'2 C2' C1' H1'1 188.3 300.0
H2'2 C2' C1' H1'2 78.9 180.0
C1' C2' H2'2 C3' 128.8 120.0
C1' C2' H2'2 H2'1 244.4 239.9
C3' C2' H2'2 H2'1 115.6 119.9
H2'2 C2' C3' C4' 317.3 300.0
H2'2 C2' C3' H3'1 82.6 60.1
H2'2 C2' C3' H3'2 192.0 180.0
C4' C3' C2' H2'1 66.8 59.9
C4' C3' C2' H2'2 317.3 300.0
C2' C3' C4' H3'1 125.3 120.1
C2' C3' C4' H3'2 234.7 240.0
H3'1 C3' C4' H3'2 109.4 119.9
C5' C4' C3' H4'1 234.8 239.9
C5' C4' C3' H4'2 125.2 119.9
C3' C4' C5' H5'1 180.0 180.0
C3' C4' C5' H5'2 305.3 300.1
C3' C4' C5' H5'3 54.7 60.0
H4'1 C4' C3' H4'2 250.5 240.0
H3'1 C3' C2' H2'1 192.1 180.0
H3'1 C3' C2' H2'2 82.6 60.1
C2' C3' H3'1 C4' 239.7 239.9
C2' C3' H3'1 H3'2 119.9 120.0
C4' C3' H3'1 H3'2 240.1 240.1
H3'1 C3' C4' C5' 47.9 59.9
H3'1 C3' C4' H4'1 173.2 180.0
H3'1 C3' C4' H4'2 282.7 300.0
H3'2 C3' C2' H2'1 301.5 299.9
H3'2 C3' C2' H2'2 192.0 180.0
C2' C3' H3'2 C4' 120.3 120.0
C2' C3' H3'2 H3'1 240.2 240.0
C4' C3' H3'2 H3'1 119.9 120.0
H3'2 C3' C4' C5' 298.5 299.9
H3'2 C3' C4' H4'1 63.8 60.1
H3'2 C3' C4' H4'2 173.3 180.0
C5' C4' C3' H3'1 47.9 59.9
C5' C4' C3' H3'2 298.5 299.9
C3' C4' C5' H4'1 125.2 120.1
C3' C4' C5' H4'2 234.7 240.1
H4'1 C4' C5' H4'2 109.5 120.0
H5'1 C5' C4' H5'2 234.7 239.8
H5'1 C5' C4' H5'3 125.3 119.9
H5'2 C5' C4' H5'3 250.6 240.1
H4'1 C4' C3' H3'1 173.2 180.0
H4'1 C4' C3' H3'2 63.8 60.1
C3' C4' H4'1 C5' 236.7 239.9
C3' C4' H4'1 H4'2 118.4 119.9
C5' C4' H4'1 H4'2 241.7 240.1
H4'1 C4' C5' H5'1 54.8 59.9
H4'1 C4' C5' H5'2 180.1 180.0
H4'1 C4' C5' H5'3 289.5 299.9
H4'2 C4' C3' H3'1 282.7 300.0
H4'2 C4' C3' H3'2 173.3 180.0
C3' C4' H4'2 C5' 123.3 120.0
C3' C4' H4'2 H4'1 241.7 240.0
C5' C4' H4'2 H4'1 118.4 120.0
H4'2 C4' C5' H5'1 305.3 299.9
H4'2 C4' C5' H5'2 70.5 60.1
H4'2 C4' C5' H5'3 179.9 180.0
H5'1 C5' C4' H4'1 54.8 59.9
H5'1 C5' C4' H4'2 305.3 299.9
C4' C5' H5'1 H5'2 125.3 120.1
C4' C5' H5'1 H5'3 234.7 240.1
H5'2 C5' H5'1 H5'3 109.4 120.0
H5'2 C5' C4' H4'1 180.1 180.0
H5'2 C5' C4' H4'2 70.5 60.1
C4' C5' H5'2 H5'1 236.7 239.8
C4' C5' H5'2 H5'3 118.3 119.9
H5'1 C5' H5'2 H5'3 241.6 240.0
H5'3 C5' C4' H4'1 289.5 299.9
H5'3 C5' C4' H4'2 179.9 180.0
C4' C5' H5'3 H5'1 123.3 120.0
C4' C5' H5'3 H5'2 241.7 240.1
H5'1 C5' H5'3 H5'2 118.3 120.0