PDB Chemical Component DIO
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DIO
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C1' |
1.530 |
1.528 |
C1 |
O1 |
1.435 |
1.427 |
C1 |
H11 |
1.115 |
1.090 |
C1 |
H12 |
1.115 |
1.090 |
C2 |
C2' |
1.578 |
1.528 |
C2 |
O1 |
1.434 |
1.427 |
C2 |
H21 |
1.115 |
1.090 |
C2 |
H22 |
1.115 |
1.090 |
C1' |
O1' |
1.449 |
1.427 |
C1' |
H1'1 |
1.115 |
1.090 |
C1' |
H1'2 |
1.114 |
1.090 |
C2' |
O1' |
1.425 |
1.427 |
C2' |
H2'1 |
1.116 |
1.090 |
C2' |
H2'2 |
1.115 |
1.090 |
Bond Angles for DIO
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C1' |
C1 |
O1 |
110.2 |
109.7 |
C1' |
C1 |
H11 |
111.9 |
109.4 |
C1' |
C1 |
H12 |
111.9 |
109.5 |
C1 |
C1' |
O1' |
110.2 |
109.7 |
C1 |
C1' |
H1'1 |
111.9 |
109.4 |
C1 |
C1' |
H1'2 |
112.0 |
109.5 |
O1 |
C1 |
H11 |
111.9 |
109.5 |
O1 |
C1 |
H12 |
111.9 |
109.5 |
C1 |
O1 |
C2 |
110.0 |
107.0 |
H11 |
C1 |
H12 |
98.5 |
109.3 |
C2' |
C2 |
O1 |
110.4 |
109.7 |
C2' |
C2 |
H21 |
111.9 |
109.5 |
C2' |
C2 |
H22 |
111.8 |
109.4 |
C2 |
C2' |
O1' |
110.2 |
109.7 |
C2 |
C2' |
H2'1 |
111.9 |
109.4 |
C2 |
C2' |
H2'2 |
111.9 |
109.5 |
O1 |
C2 |
H21 |
111.9 |
109.5 |
O1 |
C2 |
H22 |
111.9 |
109.5 |
H21 |
C2 |
H22 |
98.5 |
109.3 |
O1' |
C1' |
H1'1 |
111.9 |
109.5 |
O1' |
C1' |
H1'2 |
111.9 |
109.5 |
C1' |
O1' |
C2' |
109.7 |
107.0 |
H1'1 |
C1' |
H1'2 |
98.5 |
109.3 |
O1' |
C2' |
H2'1 |
111.9 |
109.5 |
O1' |
C2' |
H2'2 |
111.9 |
109.5 |
H2'1 |
C2' |
H2'2 |
98.5 |
109.3 |
Torsion Angles for DIO
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1 |
C1' |
H11 |
234.8 |
239.9 |
O1 |
C1 |
C1' |
H12 |
125.3 |
120.1 |
C1' |
C1 |
O1 |
C2 |
59.2 |
61.1 |
H11 |
C1 |
C1' |
H12 |
250.5 |
240.2 |
O1' |
C1' |
C1 |
H1'1 |
234.8 |
239.9 |
O1' |
C1' |
C1 |
H1'2 |
125.3 |
120.1 |
C1 |
C1' |
O1' |
C2' |
59.6 |
61.1 |
H1'1 |
C1' |
C1 |
H1'2 |
250.5 |
240.2 |
C1' |
C1 |
O1 |
H11 |
125.2 |
120.0 |
C1' |
C1 |
O1 |
H12 |
234.7 |
239.9 |
O1 |
C1 |
C1' |
O1' |
299.8 |
297.2 |
O1 |
C1 |
C1' |
H1'1 |
65.0 |
57.3 |
O1 |
C1 |
C1' |
H1'2 |
174.5 |
177.1 |
H11 |
C1 |
O1 |
H12 |
109.5 |
119.8 |
C2' |
C2 |
O1 |
C1 |
303.0 |
298.9 |
C1 |
O1 |
C2 |
H21 |
177.7 |
178.7 |
C1 |
O1 |
C2 |
H22 |
68.2 |
58.9 |
C1' |
C1 |
H11 |
O1 |
235.7 |
239.8 |
C1' |
C1 |
H11 |
H12 |
117.9 |
119.9 |
H11 |
C1 |
C1' |
O1' |
65.0 |
57.3 |
H11 |
C1 |
C1' |
H1'1 |
190.2 |
177.3 |
H11 |
C1 |
C1' |
H1'2 |
299.7 |
297.1 |
O1 |
C1 |
H11 |
H12 |
242.1 |
240.1 |
H11 |
C1 |
O1 |
C2 |
294.0 |
301.1 |
C1' |
C1 |
H12 |
O1 |
124.3 |
120.3 |
C1' |
C1 |
H12 |
H11 |
242.2 |
240.1 |
H12 |
C1 |
C1' |
O1' |
174.5 |
177.1 |
H12 |
C1 |
C1' |
H1'1 |
299.7 |
297.1 |
H12 |
C1 |
C1' |
H1'2 |
49.2 |
56.9 |
O1 |
C1 |
H12 |
H11 |
117.8 |
119.9 |
H12 |
C1 |
O1 |
C2 |
184.4 |
181.3 |
C1 |
O1 |
C2 |
C2' |
303.0 |
298.9 |
O1 |
C2 |
C2' |
H21 |
234.7 |
239.9 |
O1 |
C2 |
C2' |
H22 |
125.3 |
120.1 |
H21 |
C2 |
C2' |
H22 |
250.5 |
240.2 |
C1' |
O1' |
C2' |
C2 |
302.7 |
298.9 |
O1' |
C2' |
C2 |
H2'1 |
234.8 |
120.1 |
O1' |
C2' |
C2 |
H2'2 |
125.3 |
239.9 |
H2'1 |
C2' |
C2 |
H2'2 |
250.5 |
119.8 |
C2 |
O1 |
C1 |
H11 |
294.0 |
301.1 |
C2 |
O1 |
C1 |
H12 |
184.4 |
181.3 |
C2' |
C2 |
O1 |
H21 |
125.3 |
120.1 |
C2' |
C2 |
O1 |
H22 |
234.8 |
240.0 |
O1 |
C2 |
C2' |
O1' |
56.9 |
62.8 |
O1 |
C2 |
C2' |
H2'1 |
182.1 |
302.7 |
O1 |
C2 |
C2' |
H2'2 |
291.6 |
182.9 |
H21 |
C2 |
O1 |
H22 |
109.5 |
119.8 |
C2' |
C2 |
H21 |
O1 |
235.6 |
239.7 |
C2' |
C2 |
H21 |
H22 |
117.7 |
119.9 |
H21 |
C2 |
C2' |
O1' |
182.1 |
182.9 |
H21 |
C2 |
C2' |
H2'1 |
307.4 |
62.9 |
H21 |
C2 |
C2' |
H2'2 |
56.9 |
303.1 |
O1 |
C2 |
H21 |
H22 |
242.2 |
240.1 |
C2' |
C2 |
H22 |
O1 |
124.4 |
120.2 |
C2' |
C2 |
H22 |
H21 |
242.2 |
240.1 |
H22 |
C2 |
C2' |
O1' |
291.6 |
302.7 |
H22 |
C2 |
C2' |
H2'1 |
56.8 |
182.7 |
H22 |
C2 |
C2' |
H2'2 |
166.3 |
62.9 |
O1 |
C2 |
H22 |
H21 |
117.8 |
119.9 |
O1' |
C1' |
C1 |
O1 |
299.8 |
297.2 |
O1' |
C1' |
C1 |
H11 |
65.0 |
57.3 |
O1' |
C1' |
C1 |
H12 |
174.5 |
177.1 |
C1 |
C1' |
O1' |
H1'1 |
125.3 |
120.0 |
C1 |
C1' |
O1' |
H1'2 |
234.7 |
239.9 |
C2 |
C2' |
O1' |
C1' |
302.7 |
298.9 |
H1'1 |
C1' |
O1' |
H1'2 |
109.4 |
119.8 |
C1' |
O1' |
C2' |
H2'1 |
177.4 |
58.9 |
C1' |
O1' |
C2' |
H2'2 |
67.9 |
178.7 |
H1'1 |
C1' |
C1 |
O1 |
65.0 |
57.3 |
H1'1 |
C1' |
C1 |
H11 |
190.2 |
177.3 |
H1'1 |
C1' |
C1 |
H12 |
299.7 |
297.1 |
C1 |
C1' |
H1'1 |
O1' |
235.7 |
239.8 |
C1 |
C1' |
H1'1 |
H1'2 |
117.9 |
119.9 |
O1' |
C1' |
H1'1 |
H1'2 |
242.2 |
240.1 |
H1'1 |
C1' |
O1' |
C2' |
294.3 |
301.1 |
H1'2 |
C1' |
C1 |
O1 |
174.5 |
177.1 |
H1'2 |
C1' |
C1 |
H11 |
299.7 |
297.1 |
H1'2 |
C1' |
C1 |
H12 |
49.2 |
56.9 |
C1 |
C1' |
H1'2 |
O1' |
124.3 |
120.3 |
C1 |
C1' |
H1'2 |
H1'1 |
242.1 |
240.1 |
O1' |
C1' |
H1'2 |
H1'1 |
117.8 |
119.9 |
H1'2 |
C1' |
O1' |
C2' |
184.9 |
181.3 |
O1' |
C2' |
C2 |
O1 |
56.9 |
62.8 |
O1' |
C2' |
C2 |
H21 |
182.1 |
182.9 |
O1' |
C2' |
C2 |
H22 |
291.6 |
302.7 |
C2 |
C2' |
O1' |
H2'1 |
125.2 |
240.0 |
C2 |
C2' |
O1' |
H2'2 |
234.7 |
120.1 |
C2' |
O1' |
C1' |
H1'1 |
294.3 |
301.1 |
C2' |
O1' |
C1' |
H1'2 |
184.9 |
181.3 |
H2'1 |
C2' |
O1' |
H2'2 |
109.5 |
240.2 |
H2'1 |
C2' |
C2 |
O1 |
182.1 |
302.7 |
H2'1 |
C2' |
C2 |
H21 |
307.4 |
62.9 |
H2'1 |
C2' |
C2 |
H22 |
56.8 |
182.7 |
C2 |
C2' |
H2'1 |
O1' |
235.7 |
120.2 |
C2 |
C2' |
H2'1 |
H2'2 |
117.8 |
240.1 |
O1' |
C2' |
H2'1 |
H2'2 |
242.1 |
119.9 |
H2'2 |
C2' |
C2 |
O1 |
291.6 |
182.9 |
H2'2 |
C2' |
C2 |
H21 |
56.9 |
303.1 |
H2'2 |
C2' |
C2 |
H22 |
166.3 |
62.9 |
C2 |
C2' |
H2'2 |
O1' |
124.3 |
239.7 |
C2 |
C2' |
H2'2 |
H2'1 |
242.2 |
119.9 |
O1' |
C2' |
H2'2 |
H2'1 |
117.8 |
240.1 |