PDB Chemical Component DIO

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DIO

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C1' 1.530 1.528
C1 O1 1.435 1.427
C1 H11 1.115 1.090
C1 H12 1.115 1.090
C2 C2' 1.578 1.528
C2 O1 1.434 1.427
C2 H21 1.115 1.090
C2 H22 1.115 1.090
C1' O1' 1.449 1.427
C1' H1'1 1.115 1.090
C1' H1'2 1.114 1.090
C2' O1' 1.425 1.427
C2' H2'1 1.116 1.090
C2' H2'2 1.115 1.090

Bond Angles for DIO

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C1' C1 O1 110.2 109.7
C1' C1 H11 111.9 109.4
C1' C1 H12 111.9 109.5
C1 C1' O1' 110.2 109.7
C1 C1' H1'1 111.9 109.4
C1 C1' H1'2 112.0 109.5
O1 C1 H11 111.9 109.5
O1 C1 H12 111.9 109.5
C1 O1 C2 110.0 107.0
H11 C1 H12 98.5 109.3
C2' C2 O1 110.4 109.7
C2' C2 H21 111.9 109.5
C2' C2 H22 111.8 109.4
C2 C2' O1' 110.2 109.7
C2 C2' H2'1 111.9 109.4
C2 C2' H2'2 111.9 109.5
O1 C2 H21 111.9 109.5
O1 C2 H22 111.9 109.5
H21 C2 H22 98.5 109.3
O1' C1' H1'1 111.9 109.5
O1' C1' H1'2 111.9 109.5
C1' O1' C2' 109.7 107.0
H1'1 C1' H1'2 98.5 109.3
O1' C2' H2'1 111.9 109.5
O1' C2' H2'2 111.9 109.5
H2'1 C2' H2'2 98.5 109.3

Torsion Angles for DIO

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O1 C1 C1' H11 234.8 239.9
O1 C1 C1' H12 125.3 120.1
C1' C1 O1 C2 59.2 61.1
H11 C1 C1' H12 250.5 240.2
O1' C1' C1 H1'1 234.8 239.9
O1' C1' C1 H1'2 125.3 120.1
C1 C1' O1' C2' 59.6 61.1
H1'1 C1' C1 H1'2 250.5 240.2
C1' C1 O1 H11 125.2 120.0
C1' C1 O1 H12 234.7 239.9
O1 C1 C1' O1' 299.8 297.2
O1 C1 C1' H1'1 65.0 57.3
O1 C1 C1' H1'2 174.5 177.1
H11 C1 O1 H12 109.5 119.8
C2' C2 O1 C1 303.0 298.9
C1 O1 C2 H21 177.7 178.7
C1 O1 C2 H22 68.2 58.9
C1' C1 H11 O1 235.7 239.8
C1' C1 H11 H12 117.9 119.9
H11 C1 C1' O1' 65.0 57.3
H11 C1 C1' H1'1 190.2 177.3
H11 C1 C1' H1'2 299.7 297.1
O1 C1 H11 H12 242.1 240.1
H11 C1 O1 C2 294.0 301.1
C1' C1 H12 O1 124.3 120.3
C1' C1 H12 H11 242.2 240.1
H12 C1 C1' O1' 174.5 177.1
H12 C1 C1' H1'1 299.7 297.1
H12 C1 C1' H1'2 49.2 56.9
O1 C1 H12 H11 117.8 119.9
H12 C1 O1 C2 184.4 181.3
C1 O1 C2 C2' 303.0 298.9
O1 C2 C2' H21 234.7 239.9
O1 C2 C2' H22 125.3 120.1
H21 C2 C2' H22 250.5 240.2
C1' O1' C2' C2 302.7 298.9
O1' C2' C2 H2'1 234.8 120.1
O1' C2' C2 H2'2 125.3 239.9
H2'1 C2' C2 H2'2 250.5 119.8
C2 O1 C1 H11 294.0 301.1
C2 O1 C1 H12 184.4 181.3
C2' C2 O1 H21 125.3 120.1
C2' C2 O1 H22 234.8 240.0
O1 C2 C2' O1' 56.9 62.8
O1 C2 C2' H2'1 182.1 302.7
O1 C2 C2' H2'2 291.6 182.9
H21 C2 O1 H22 109.5 119.8
C2' C2 H21 O1 235.6 239.7
C2' C2 H21 H22 117.7 119.9
H21 C2 C2' O1' 182.1 182.9
H21 C2 C2' H2'1 307.4 62.9
H21 C2 C2' H2'2 56.9 303.1
O1 C2 H21 H22 242.2 240.1
C2' C2 H22 O1 124.4 120.2
C2' C2 H22 H21 242.2 240.1
H22 C2 C2' O1' 291.6 302.7
H22 C2 C2' H2'1 56.8 182.7
H22 C2 C2' H2'2 166.3 62.9
O1 C2 H22 H21 117.8 119.9
O1' C1' C1 O1 299.8 297.2
O1' C1' C1 H11 65.0 57.3
O1' C1' C1 H12 174.5 177.1
C1 C1' O1' H1'1 125.3 120.0
C1 C1' O1' H1'2 234.7 239.9
C2 C2' O1' C1' 302.7 298.9
H1'1 C1' O1' H1'2 109.4 119.8
C1' O1' C2' H2'1 177.4 58.9
C1' O1' C2' H2'2 67.9 178.7
H1'1 C1' C1 O1 65.0 57.3
H1'1 C1' C1 H11 190.2 177.3
H1'1 C1' C1 H12 299.7 297.1
C1 C1' H1'1 O1' 235.7 239.8
C1 C1' H1'1 H1'2 117.9 119.9
O1' C1' H1'1 H1'2 242.2 240.1
H1'1 C1' O1' C2' 294.3 301.1
H1'2 C1' C1 O1 174.5 177.1
H1'2 C1' C1 H11 299.7 297.1
H1'2 C1' C1 H12 49.2 56.9
C1 C1' H1'2 O1' 124.3 120.3
C1 C1' H1'2 H1'1 242.1 240.1
O1' C1' H1'2 H1'1 117.8 119.9
H1'2 C1' O1' C2' 184.9 181.3
O1' C2' C2 O1 56.9 62.8
O1' C2' C2 H21 182.1 182.9
O1' C2' C2 H22 291.6 302.7
C2 C2' O1' H2'1 125.2 240.0
C2 C2' O1' H2'2 234.7 120.1
C2' O1' C1' H1'1 294.3 301.1
C2' O1' C1' H1'2 184.9 181.3
H2'1 C2' O1' H2'2 109.5 240.2
H2'1 C2' C2 O1 182.1 302.7
H2'1 C2' C2 H21 307.4 62.9
H2'1 C2' C2 H22 56.8 182.7
C2 C2' H2'1 O1' 235.7 120.2
C2 C2' H2'1 H2'2 117.8 240.1
O1' C2' H2'1 H2'2 242.1 119.9
H2'2 C2' C2 O1 291.6 182.9
H2'2 C2' C2 H21 56.9 303.1
H2'2 C2' C2 H22 166.3 62.9
C2 C2' H2'2 O1' 124.3 239.7
C2 C2' H2'2 H2'1 242.2 119.9
O1' C2' H2'2 H2'1 117.8 240.1