PDB Chemical Component DIL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DIL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.497 |
1.469 |
| N |
H |
1.026 |
1.009 |
| N |
H2 |
1.020 |
1.009 |
| CA |
C |
1.572 |
1.507 |
| CA |
CB |
1.573 |
1.528 |
| CA |
HA |
1.107 |
1.090 |
| C |
O |
1.235 |
1.208 |
| C |
OXT |
1.349 |
1.341 |
| CB |
CG1 |
1.558 |
1.529 |
| CB |
CG2 |
1.553 |
1.531 |
| CB |
HB |
1.109 |
1.089 |
| CG1 |
CD1 |
1.537 |
1.529 |
| CG1 |
HG12 |
1.107 |
1.090 |
| CG1 |
HG13 |
1.106 |
1.090 |
| CG2 |
HG21 |
1.102 |
1.089 |
| CG2 |
HG22 |
1.106 |
1.089 |
| CG2 |
HG23 |
1.106 |
1.090 |
| CD1 |
HD11 |
1.105 |
1.089 |
| CD1 |
HD12 |
1.106 |
1.090 |
| CD1 |
HD13 |
1.106 |
1.089 |
| OXT |
HXT |
0.949 |
0.968 |
Bond Angles for DIL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
121.4 |
106.7 |
| CA |
N |
H2 |
109.9 |
106.7 |
| N |
CA |
C |
115.8 |
109.4 |
| N |
CA |
CB |
110.4 |
109.5 |
| N |
CA |
HA |
104.7 |
109.5 |
| H |
N |
H2 |
125.4 |
106.7 |
| C |
CA |
CB |
114.8 |
109.5 |
| C |
CA |
HA |
104.5 |
109.5 |
| CA |
C |
O |
118.3 |
120.0 |
| CA |
C |
OXT |
119.5 |
120.0 |
| CB |
CA |
HA |
105.2 |
109.5 |
| CA |
CB |
CG1 |
112.1 |
109.5 |
| CA |
CB |
CG2 |
114.6 |
109.4 |
| CA |
CB |
HB |
106.7 |
109.5 |
| O |
C |
OXT |
122.3 |
120.0 |
| C |
OXT |
HXT |
119.5 |
120.0 |
| CG1 |
CB |
CG2 |
111.1 |
109.5 |
| CG1 |
CB |
HB |
105.5 |
109.5 |
| CB |
CG1 |
CD1 |
115.8 |
109.6 |
| CB |
CG1 |
HG12 |
110.2 |
109.5 |
| CB |
CG1 |
HG13 |
109.4 |
109.4 |
| CG2 |
CB |
HB |
106.2 |
109.4 |
| CB |
CG2 |
HG21 |
112.2 |
109.5 |
| CB |
CG2 |
HG22 |
112.0 |
109.5 |
| CB |
CG2 |
HG23 |
111.9 |
109.4 |
| CD1 |
CG1 |
HG12 |
109.1 |
109.5 |
| CD1 |
CG1 |
HG13 |
107.0 |
109.4 |
| CG1 |
CD1 |
HD11 |
112.1 |
109.6 |
| CG1 |
CD1 |
HD12 |
111.0 |
109.5 |
| CG1 |
CD1 |
HD13 |
111.7 |
109.5 |
| HG12 |
CG1 |
HG13 |
104.8 |
109.5 |
| HG21 |
CG2 |
HG22 |
106.9 |
109.5 |
| HG21 |
CG2 |
HG23 |
106.4 |
109.5 |
| HG22 |
CG2 |
HG23 |
107.2 |
109.5 |
| HD11 |
CD1 |
HD12 |
107.0 |
109.4 |
| HD11 |
CD1 |
HD13 |
107.6 |
109.5 |
| HD12 |
CD1 |
HD13 |
107.2 |
109.4 |
Torsion Angles for DIL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
199.5 |
113.8 |
| C |
CA |
N |
CB |
227.3 |
240.0 |
| C |
CA |
N |
HA |
114.5 |
120.0 |
| N |
CA |
C |
O |
212.1 |
30.0 |
| N |
CA |
C |
OXT |
32.5 |
210.0 |
| CB |
CA |
N |
HA |
247.2 |
240.0 |
| N |
CA |
CB |
CG1 |
156.8 |
60.0 |
| N |
CA |
CB |
CG2 |
284.6 |
180.0 |
| N |
CA |
CB |
HB |
41.8 |
299.9 |
| CA |
N |
H |
H2 |
157.4 |
246.2 |
| H |
N |
CA |
C |
254.2 |
53.8 |
| H |
N |
CA |
CB |
26.8 |
173.8 |
| H |
N |
CA |
HA |
139.6 |
293.8 |
| CA |
N |
H2 |
H |
200.5 |
113.8 |
| H2 |
N |
CA |
C |
54.7 |
300.0 |
| H2 |
N |
CA |
CB |
187.4 |
60.0 |
| H2 |
N |
CA |
HA |
300.1 |
180.0 |
| C |
CA |
N |
H |
254.2 |
53.8 |
| C |
CA |
N |
H2 |
54.7 |
300.0 |
| N |
CA |
C |
CB |
130.6 |
120.0 |
| N |
CA |
C |
HA |
245.3 |
240.0 |
| CB |
CA |
C |
HA |
114.7 |
120.0 |
| C |
CA |
CB |
CG1 |
289.9 |
180.0 |
| C |
CA |
CB |
CG2 |
57.7 |
300.0 |
| C |
CA |
CB |
HB |
175.0 |
59.9 |
| O |
C |
CA |
OXT |
179.6 |
180.0 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| CB |
CA |
N |
H |
26.8 |
173.8 |
| CB |
CA |
N |
H2 |
187.4 |
60.0 |
| N |
CA |
CB |
C |
226.8 |
240.0 |
| N |
CA |
CB |
HA |
112.5 |
120.0 |
| C |
CA |
CB |
HA |
245.7 |
240.0 |
| CB |
CA |
C |
O |
81.5 |
270.0 |
| CB |
CA |
C |
OXT |
261.9 |
90.0 |
| CG1 |
CB |
CA |
CG2 |
232.2 |
240.0 |
| CG1 |
CB |
CA |
HB |
114.9 |
120.1 |
| CA |
CB |
CG1 |
CD1 |
195.8 |
180.0 |
| CA |
CB |
CG1 |
HG12 |
71.4 |
60.0 |
| CA |
CB |
CG1 |
HG13 |
316.7 |
300.0 |
| CG2 |
CB |
CA |
HB |
242.8 |
240.1 |
| CA |
CB |
CG2 |
HG21 |
48.8 |
300.0 |
| CA |
CB |
CG2 |
HG22 |
288.6 |
60.0 |
| CA |
CB |
CG2 |
HG23 |
168.2 |
180.0 |
| HA |
CA |
N |
H |
139.6 |
293.8 |
| HA |
CA |
N |
H2 |
300.1 |
180.0 |
| N |
CA |
HA |
C |
122.2 |
120.0 |
| N |
CA |
HA |
CB |
243.5 |
240.0 |
| C |
CA |
HA |
CB |
121.3 |
120.1 |
| HA |
CA |
C |
O |
326.8 |
150.0 |
| HA |
CA |
C |
OXT |
147.2 |
330.0 |
| HA |
CA |
CB |
CG1 |
44.3 |
300.0 |
| HA |
CA |
CB |
CG2 |
172.1 |
60.0 |
| HA |
CA |
CB |
HB |
289.3 |
180.0 |
| O |
C |
CA |
CB |
81.5 |
270.0 |
| O |
C |
CA |
HA |
326.8 |
150.0 |
| CA |
C |
O |
OXT |
180.4 |
180.0 |
| O |
C |
OXT |
HXT |
0.4 |
0.0 |
| OXT |
C |
CA |
CB |
261.9 |
90.0 |
| OXT |
C |
CA |
HA |
147.2 |
330.0 |
| CA |
C |
OXT |
O |
179.6 |
180.0 |
| CG1 |
CB |
CA |
HA |
44.3 |
300.0 |
| CA |
CB |
CG1 |
CG2 |
129.6 |
120.0 |
| CA |
CB |
CG1 |
HB |
244.3 |
239.9 |
| CG2 |
CB |
CG1 |
HB |
114.7 |
119.9 |
| CG1 |
CB |
CG2 |
HG21 |
177.1 |
60.0 |
| CG1 |
CB |
CG2 |
HG22 |
56.9 |
180.1 |
| CG1 |
CB |
CG2 |
HG23 |
296.6 |
300.0 |
| CD1 |
CG1 |
CB |
HG12 |
124.4 |
120.0 |
| CD1 |
CG1 |
CB |
HG13 |
239.1 |
240.0 |
| CB |
CG1 |
CD1 |
HD11 |
295.9 |
180.0 |
| CB |
CG1 |
CD1 |
HD12 |
176.3 |
300.0 |
| CB |
CG1 |
CD1 |
HD13 |
56.8 |
59.9 |
| HG12 |
CG1 |
CB |
HG13 |
114.7 |
120.0 |
| CG2 |
CB |
CA |
HA |
172.1 |
60.0 |
| CA |
CB |
CG2 |
CG1 |
231.7 |
240.0 |
| CA |
CB |
CG2 |
HB |
117.5 |
120.0 |
| CG1 |
CB |
CG2 |
HB |
245.8 |
240.0 |
| CG2 |
CB |
CG1 |
CD1 |
66.2 |
60.0 |
| CG2 |
CB |
CG1 |
HG12 |
301.8 |
300.0 |
| CG2 |
CB |
CG1 |
HG13 |
187.1 |
180.0 |
| HG21 |
CG2 |
CB |
HG22 |
120.2 |
240.0 |
| HG21 |
CG2 |
CB |
HG23 |
240.5 |
120.0 |
| HG22 |
CG2 |
CB |
HG23 |
120.4 |
240.0 |
| HB |
CB |
CA |
HA |
289.3 |
180.0 |
| CA |
CB |
HB |
CG1 |
119.4 |
120.1 |
| CA |
CB |
HB |
CG2 |
237.4 |
240.1 |
| CG1 |
CB |
HB |
CG2 |
118.0 |
120.0 |
| HB |
CB |
CG1 |
CD1 |
311.5 |
300.1 |
| HB |
CB |
CG1 |
HG12 |
187.1 |
180.0 |
| HB |
CB |
CG1 |
HG13 |
72.4 |
60.1 |
| HB |
CB |
CG2 |
HG21 |
291.3 |
180.0 |
| HB |
CB |
CG2 |
HG22 |
171.1 |
300.0 |
| HB |
CB |
CG2 |
HG23 |
50.8 |
60.0 |
| CD1 |
CG1 |
CB |
CG2 |
66.2 |
60.0 |
| CD1 |
CG1 |
CB |
HB |
311.5 |
300.1 |
| CB |
CG1 |
CD1 |
HG12 |
235.0 |
239.9 |
| CB |
CG1 |
CD1 |
HG13 |
122.2 |
120.0 |
| HG12 |
CG1 |
CD1 |
HG13 |
247.1 |
240.0 |
| HD11 |
CD1 |
CG1 |
HD12 |
119.6 |
240.0 |
| HD11 |
CD1 |
CG1 |
HD13 |
239.2 |
120.1 |
| HD12 |
CD1 |
CG1 |
HD13 |
119.6 |
240.1 |
| HG12 |
CG1 |
CB |
CG2 |
301.8 |
300.0 |
| HG12 |
CG1 |
CB |
HB |
187.1 |
180.0 |
| CB |
CG1 |
HG12 |
CD1 |
128.1 |
120.1 |
| CB |
CG1 |
HG12 |
HG13 |
242.4 |
240.0 |
| CD1 |
CG1 |
HG12 |
HG13 |
114.3 |
119.9 |
| HG12 |
CG1 |
CD1 |
HD11 |
60.9 |
300.0 |
| HG12 |
CG1 |
CD1 |
HD12 |
301.3 |
60.0 |
| HG12 |
CG1 |
CD1 |
HD13 |
181.7 |
180.0 |
| HG13 |
CG1 |
CB |
CG2 |
187.1 |
180.0 |
| HG13 |
CG1 |
CB |
HB |
72.4 |
60.1 |
| CB |
CG1 |
HG13 |
CD1 |
233.9 |
240.0 |
| CB |
CG1 |
HG13 |
HG12 |
118.1 |
120.0 |
| CD1 |
CG1 |
HG13 |
HG12 |
244.2 |
240.0 |
| HG13 |
CG1 |
CD1 |
HD11 |
173.8 |
60.0 |
| HG13 |
CG1 |
CD1 |
HD12 |
54.2 |
180.0 |
| HG13 |
CG1 |
CD1 |
HD13 |
294.6 |
299.9 |
| HG21 |
CG2 |
CB |
HB |
291.3 |
180.0 |
| CB |
CG2 |
HG21 |
HG22 |
236.9 |
120.0 |
| CB |
CG2 |
HG21 |
HG23 |
122.6 |
240.1 |
| HG22 |
CG2 |
HG21 |
HG23 |
245.7 |
120.0 |
| HG22 |
CG2 |
CB |
HB |
171.1 |
300.0 |
| CB |
CG2 |
HG22 |
HG21 |
123.2 |
240.0 |
| CB |
CG2 |
HG22 |
HG23 |
236.9 |
120.0 |
| HG21 |
CG2 |
HG22 |
HG23 |
113.7 |
240.0 |
| HG23 |
CG2 |
CB |
HB |
50.8 |
60.0 |
| CB |
CG2 |
HG23 |
HG21 |
237.2 |
120.0 |
| CB |
CG2 |
HG23 |
HG22 |
123.1 |
240.0 |
| HG21 |
CG2 |
HG23 |
HG22 |
245.9 |
120.0 |
| HD11 |
CD1 |
CG1 |
HG12 |
60.9 |
300.0 |
| HD11 |
CD1 |
CG1 |
HG13 |
173.8 |
60.0 |
| CG1 |
CD1 |
HD11 |
HD12 |
238.1 |
120.0 |
| CG1 |
CD1 |
HD11 |
HD13 |
123.1 |
239.9 |
| HD12 |
CD1 |
HD11 |
HD13 |
245.0 |
119.9 |
| HD12 |
CD1 |
CG1 |
HG12 |
301.3 |
60.0 |
| HD12 |
CD1 |
CG1 |
HG13 |
54.2 |
180.0 |
| CG1 |
CD1 |
HD12 |
HD11 |
122.6 |
239.9 |
| CG1 |
CD1 |
HD12 |
HD13 |
237.8 |
120.0 |
| HD11 |
CD1 |
HD12 |
HD13 |
115.2 |
240.1 |
| HD13 |
CD1 |
CG1 |
HG12 |
181.7 |
180.0 |
| HD13 |
CD1 |
CG1 |
HG13 |
294.6 |
299.9 |
| CG1 |
CD1 |
HD13 |
HD11 |
236.6 |
120.1 |
| CG1 |
CD1 |
HD13 |
HD12 |
121.8 |
240.0 |
| HD11 |
CD1 |
HD13 |
HD12 |
245.2 |
119.9 |