PDB Chemical Component DII

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DII

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
P1	O1	1.495	1.480
P1	O2	1.540	1.609
P1	O3	1.569	1.609
P1	C7	1.644	1.823
O2	C1	1.436	1.429
C1	C2	1.518	1.529
C1	C3	1.526	1.529
C1	H1	1.114	1.090
C2	H21	1.115	1.090
C2	H22	1.114	1.089
C2	H23	1.116	1.091
C3	H31	1.115	1.090
C3	H32	1.116	1.090
C3	H33	1.115	1.090
O3	C4	1.461	1.428
C4	C5	1.535	1.530
C4	C6	1.526	1.529
C4	H4	1.116	1.090
C5	H51	1.116	1.090
C5	H52	1.115	1.090
C5	H53	1.115	1.090
C6	H61	1.116	1.089
C6	H62	1.115	1.089
C6	H63	1.115	1.091
C7	H71	1.115	1.090
C7	H72	1.114	1.090
C7	H73	1.115	1.090

Bond Angles for DII

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1	P1	O2	109.1	109.4
O1	P1	O3	109.8	109.5
O1	P1	C7	111.4	109.4
O2	P1	O3	105.6	109.5
O2	P1	C7	109.2	109.4
P1	O2	C1	120.3	106.9
O3	P1	C7	111.5	109.5
P1	O3	C4	116.6	106.8
P1	C7	H71	111.4	109.5
P1	C7	H72	111.5	109.5
P1	C7	H73	111.5	109.5
O2	C1	C2	111.9	109.5
O2	C1	C3	113.1	109.5
O2	C1	H1	106.1	109.4
C2	C1	C3	112.0	109.5
C2	C1	H1	107.3	109.5
C1	C2	H21	111.9	109.5
C1	C2	H22	111.3	109.5
C1	C2	H23	111.3	109.4
C3	C1	H1	105.9	109.5
C1	C3	H31	113.1	109.5
C1	C3	H32	110.9	109.5
C1	C3	H33	110.9	109.5
H21	C2	H22	111.4	109.5
H21	C2	H23	111.3	109.4
H22	C2	H23	99.1	109.4
H31	C3	H32	110.8	109.5
H31	C3	H33	110.9	109.5
H32	C3	H33	99.4	109.5
O3	C4	C5	114.0	109.4
O3	C4	C6	113.4	109.5
O3	C4	H4	103.6	109.4
C5	C4	C6	110.3	109.5
C5	C4	H4	107.1	109.4
C4	C5	H51	114.0	109.5
C4	C5	H52	110.5	109.5
C4	C5	H53	110.5	109.5
C6	C4	H4	107.9	109.5
C4	C6	H61	113.3	109.5
C4	C6	H62	110.8	109.4
C4	C6	H63	110.8	109.5
H51	C5	H52	110.5	109.4
H51	C5	H53	110.6	109.5
H52	C5	H53	99.8	109.5
H61	C6	H62	110.8	109.6
H61	C6	H63	110.7	109.4
H62	C6	H63	99.6	109.5
H71	C7	H72	111.5	109.5
H71	C7	H73	111.4	109.5
H72	C7	H73	98.9	109.4

Torsion Angles for DII

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O2	P1	O1	O3	244.7	120.1
O2	P1	O1	C7	120.7	240.1
O1	P1	O2	C1	308.9	50.3
O3	P1	O1	C7	236.0	120.0
O1	P1	O3	C4	194.8	57.0
O1	P1	C7	H71	180.0	180.1
O1	P1	C7	H72	305.3	300.1
O1	P1	C7	H73	54.8	60.0
O1	P1	O2	O3	118.0	240.0
O1	P1	O2	C7	238.0	119.9
O3	P1	O2	C7	120.0	239.9
O2	P1	O3	C4	312.3	297.0
O2	P1	C7	H71	59.3	300.0
O2	P1	C7	H72	184.6	60.0
O2	P1	C7	H73	294.1	179.9
P1	O2	C1	C2	115.7	125.2
P1	O2	C1	C3	243.4	245.2
P1	O2	C1	H1	359.0	5.2
O1	P1	O3	O2	242.5	120.0
O1	P1	O3	C7	124.0	240.0
O2	P1	O3	C7	241.5	120.0
O3	P1	O2	C1	190.9	170.4
O3	P1	C7	H71	303.0	60.0
O3	P1	C7	H72	68.3	180.1
O3	P1	C7	H73	177.8	300.0
P1	O3	C4	C5	96.7	125.4
P1	O3	C4	C6	224.0	245.4
P1	O3	C4	H4	340.6	5.5
O1	P1	C7	O2	120.6	240.1
O1	P1	C7	O3	237.0	120.0
O2	P1	C7	O3	116.3	239.9
C7	P1	O2	C1	70.9	290.4
C7	P1	O3	C4	70.9	177.0
H71	C7	P1	H72	234.7	240.0
H71	C7	P1	H73	125.2	120.0
H72	C7	P1	H73	250.5	240.0
C1	O2	P1	O3	190.9	170.4
C1	O2	P1	C7	70.9	290.4
C2	C1	O2	C3	232.3	240.0
C2	C1	O2	H1	116.7	120.0
O2	C1	C2	H21	180.0	180.0
O2	C1	C2	H22	305.3	300.1
O2	C1	C2	H23	54.8	60.1
C3	C1	O2	H1	244.4	240.0
O2	C1	C3	H31	180.0	295.2
O2	C1	C3	H32	305.2	55.2
O2	C1	C3	H33	54.7	175.1
O2	C1	C2	C3	128.2	120.0
O2	C1	C2	H1	244.0	240.1
C3	C1	C2	H1	115.8	120.0
C2	C1	C3	H31	307.6	55.2
C2	C1	C3	H32	72.8	175.2
C2	C1	C3	H33	182.3	295.2
H21	C2	C1	H22	234.7	239.9
H21	C2	C1	H23	125.2	119.9
H22	C2	C1	H23	250.5	240.1
O2	C1	C3	C2	232.4	240.0
O2	C1	C3	H1	115.7	119.9
C2	C1	C3	H1	243.3	240.0
C3	C1	C2	H21	51.7	60.0
C3	C1	C2	H22	177.0	180.1
C3	C1	C2	H23	286.5	300.0
H31	C3	C1	H32	234.8	240.0
H31	C3	C1	H33	125.3	120.0
H32	C3	C1	H33	250.5	240.0
O2	C1	H1	C2	119.7	120.0
O2	C1	H1	C3	239.6	240.0
C2	C1	H1	C3	119.8	120.0
H1	C1	C2	H21	295.9	299.9
H1	C1	C2	H22	61.2	60.1
H1	C1	C2	H23	170.7	180.0
H1	C1	C3	H31	64.3	175.2
H1	C1	C3	H32	189.5	295.3
H1	C1	C3	H33	299.0	55.2
H21	C2	C1	C3	51.7	60.0
H21	C2	C1	H1	295.9	299.9
C1	C2	H21	H22	125.3	120.1
C1	C2	H21	H23	234.8	240.1
H22	C2	H21	H23	109.5	120.0
H22	C2	C1	C3	177.0	180.1
H22	C2	C1	H1	61.2	60.1
C1	C2	H22	H21	234.4	239.9
C1	C2	H22	H23	117.2	119.9
H21	C2	H22	H23	242.8	240.0
H23	C2	C1	C3	286.5	300.0
H23	C2	C1	H1	170.7	180.0
C1	C2	H23	H21	125.5	120.0
C1	C2	H23	H22	242.8	240.0
H21	C2	H23	H22	117.2	120.0
H31	C3	C1	H1	64.3	175.2
C1	C3	H31	H32	125.3	120.0
C1	C3	H31	H33	234.7	240.0
H32	C3	H31	H33	109.4	120.0
H32	C3	C1	H1	189.5	295.3
C1	C3	H32	H31	233.5	240.0
C1	C3	H32	H33	116.8	120.0
H31	C3	H32	H33	243.3	240.0
H33	C3	C1	H1	299.0	55.2
C1	C3	H33	H31	126.6	120.0
C1	C3	H33	H32	243.2	240.0
H31	C3	H33	H32	116.7	120.0
C4	O3	P1	C7	70.9	177.0
C5	C4	O3	C6	232.7	240.0
C5	C4	O3	H4	116.0	119.9
O3	C4	C5	H51	180.0	184.9
O3	C4	C5	H52	305.2	304.8
O3	C4	C5	H53	54.7	64.8
C6	C4	O3	H4	243.4	239.9
O3	C4	C6	H61	180.0	299.9
O3	C4	C6	H62	305.2	60.0
O3	C4	C6	H63	54.8	180.0
O3	C4	C5	C6	128.9	120.0
O3	C4	C5	H4	246.0	240.1
C6	C4	C5	H4	117.1	120.1
C5	C4	C6	H61	309.2	59.9
C5	C4	C6	H62	74.5	180.0
C5	C4	C6	H63	184.0	300.0
H51	C5	C4	H52	234.8	240.1
H51	C5	C4	H53	125.3	120.0
H52	C5	C4	H53	250.5	239.9
O3	C4	C6	C5	230.7	240.0
O3	C4	C6	H4	114.1	120.0
C5	C4	C6	H4	243.4	240.0
C6	C4	C5	H51	51.1	64.8
C6	C4	C5	H52	176.3	184.7
C6	C4	C5	H53	285.8	304.8
H61	C6	C4	H62	234.7	239.9
H61	C6	C4	H63	125.2	119.9
H62	C6	C4	H63	250.5	240.0
O3	C4	H4	C5	120.8	119.9
O3	C4	H4	C6	239.6	239.9
C5	C4	H4	C6	118.7	120.0
H4	C4	C5	H51	294.0	304.8
H4	C4	C5	H52	59.2	64.7
H4	C4	C5	H53	168.7	184.8
H4	C4	C6	H61	65.9	179.9
H4	C4	C6	H62	191.2	300.0
H4	C4	C6	H63	300.7	60.0
H51	C5	C4	C6	51.1	64.8
H51	C5	C4	H4	294.0	304.8
C4	C5	H51	H52	125.2	120.0
C4	C5	H51	H53	234.7	240.0
H52	C5	H51	H53	109.5	120.0
H52	C5	C4	C6	176.3	184.7
H52	C5	C4	H4	59.2	64.7
C4	C5	H52	H51	232.8	240.0
C4	C5	H52	H53	116.4	120.0
H51	C5	H52	H53	243.6	240.0
H53	C5	C4	C6	285.8	304.8
H53	C5	C4	H4	168.7	184.8
C4	C5	H53	H51	127.2	120.0
C4	C5	H53	H52	243.6	240.0
H51	C5	H53	H52	116.4	120.0
H61	C6	C4	H4	65.9	179.9
C4	C6	H61	H62	125.3	120.0
C4	C6	H61	H63	234.8	240.0
H62	C6	H61	H63	109.5	120.0
H62	C6	C4	H4	191.2	300.0
C4	C6	H62	H61	233.3	240.0
C4	C6	H62	H63	116.7	120.0
H61	C6	H62	H63	243.4	240.0
H63	C6	C4	H4	300.7	60.0
C4	C6	H63	H61	126.6	120.0
C4	C6	H63	H62	243.3	240.0
H61	C6	H63	H62	116.7	120.1
P1	C7	H71	H72	125.3	120.0
P1	C7	H71	H73	234.8	240.0
H72	C7	H71	H73	109.5	119.9
P1	C7	H72	H71	234.8	240.0
P1	C7	H72	H73	117.4	120.0
H71	C7	H72	H73	242.7	240.0
P1	C7	H73	H71	125.2	120.0
P1	C7	H73	H72	242.6	240.0
H71	C7	H73	H72	117.4	120.0