PDB Chemical Component DIH
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DIH
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O6 |
C6 |
1.229 |
1.220 |
| C6 |
N1 |
1.438 |
1.350 |
| C6 |
C5 |
1.467 |
1.410 |
| N7 |
C5 |
1.388 |
1.375 |
| N7 |
C8 |
1.312 |
1.361 |
| N1 |
C2 |
1.432 |
1.358 |
| C5 |
C4 |
1.417 |
1.400 |
| C8 |
C9 |
1.389 |
1.349 |
| C2 |
N3 |
1.392 |
1.302 |
| C4 |
C9 |
1.409 |
1.411 |
| C4 |
N3 |
1.440 |
1.355 |
| C9 |
C10 |
1.484 |
1.507 |
| C10 |
N1' |
1.445 |
1.469 |
| N1' |
C6' |
1.450 |
1.486 |
| N1' |
C2' |
1.436 |
1.479 |
| C6' |
C4' |
1.468 |
1.550 |
| C2' |
C3' |
1.479 |
1.540 |
| O5' |
C5' |
1.419 |
1.429 |
| C5' |
C4' |
1.487 |
1.530 |
| C4' |
C3' |
1.491 |
1.546 |
| C3' |
O3' |
1.414 |
1.429 |
| O5' |
H1 |
0.950 |
0.968 |
| C5' |
H2 |
1.100 |
1.090 |
| C5' |
H3 |
1.100 |
1.090 |
| C4' |
H4 |
1.100 |
1.090 |
| C6' |
H5 |
1.100 |
1.091 |
| C6' |
H6 |
1.100 |
1.090 |
| C3' |
H7 |
1.100 |
1.090 |
| O3' |
H8 |
0.950 |
0.967 |
| C2' |
H9 |
1.100 |
1.090 |
| C2' |
H10 |
1.100 |
1.090 |
| N1' |
H11 |
1.000 |
1.009 |
| C10 |
H12 |
1.100 |
1.090 |
| C10 |
H13 |
1.100 |
1.090 |
| C8 |
H14 |
1.080 |
1.080 |
| N7 |
H15 |
1.000 |
0.970 |
| N1 |
H16 |
1.000 |
0.970 |
| C2 |
H17 |
1.080 |
1.080 |
Bond Angles for DIH
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O6 |
C6 |
N1 |
118.8 |
120.8 |
| C6 |
N1 |
C2 |
124.5 |
120.6 |
| C6 |
N1 |
H16 |
117.7 |
119.7 |
| C6 |
C5 |
C4 |
118.9 |
118.5 |
| N7 |
C5 |
C4 |
110.3 |
107.3 |
| C5 |
N7 |
H15 |
127.8 |
125.6 |
| N7 |
C8 |
H14 |
122.3 |
125.3 |
| N1 |
C2 |
N3 |
121.1 |
122.1 |
| C2 |
N1 |
H16 |
117.7 |
119.7 |
| N1 |
C2 |
H17 |
119.5 |
119.0 |
| C5 |
C4 |
N3 |
125.5 |
119.4 |
| N3 |
C2 |
H17 |
119.5 |
118.9 |
| C9 |
C10 |
H12 |
104.2 |
109.5 |
| C9 |
C10 |
H13 |
104.2 |
109.5 |
| C10 |
N1' |
H11 |
110.0 |
110.3 |
| N1' |
C6' |
H5 |
110.0 |
110.6 |
| N1' |
C6' |
H6 |
110.0 |
110.8 |
| N1' |
C2' |
H9 |
110.1 |
109.9 |
| N1' |
C2' |
H10 |
110.0 |
110.1 |
| C6' |
C4' |
C3' |
107.5 |
102.9 |
| C6' |
C4' |
H4 |
109.1 |
110.9 |
| C2' |
C3' |
H7 |
107.6 |
110.4 |
| O5' |
C5' |
C4' |
127.5 |
109.4 |
| C5' |
O5' |
H1 |
109.5 |
114.0 |
| O5' |
C5' |
H2 |
104.8 |
109.5 |
| O5' |
C5' |
H3 |
104.8 |
109.4 |
| C5' |
C4' |
C3' |
113.6 |
110.8 |
| C4' |
C5' |
H2 |
104.8 |
109.5 |
| C4' |
C5' |
H3 |
104.8 |
109.5 |
| C5' |
C4' |
H4 |
108.8 |
110.7 |
| C4' |
C3' |
O3' |
116.2 |
110.3 |
| C3' |
C4' |
H4 |
108.7 |
110.7 |
| C4' |
C3' |
H7 |
107.5 |
110.3 |
| O3' |
C3' |
H7 |
108.5 |
110.2 |
| C3' |
O3' |
H8 |
109.5 |
114.0 |
| H2 |
C5' |
H3 |
109.5 |
109.5 |
| H5 |
C6' |
H6 |
109.5 |
110.5 |
| H9 |
C2' |
H10 |
109.4 |
110.0 |
| H12 |
C10 |
H13 |
109.5 |
109.4 |
Torsion Angles for DIH
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O6 |
C6 |
N1 |
C2 |
180.0 |
180.0 |
| O6 |
C6 |
N1 |
H16 |
360.0 |
360.0 |
| O6 |
C6 |
C5 |
C4 |
180.1 |
180.3 |
| N1 |
C6 |
C5 |
C4 |
0.2 |
0.3 |
| C6 |
N1 |
C2 |
N3 |
0.1 |
360.0 |
| C2 |
N1 |
C6 |
H16 |
180.0 |
180.1 |
| C6 |
N1 |
C2 |
H17 |
180.0 |
180.0 |
| N7 |
C5 |
C6 |
C4 |
179.8 |
179.7 |
| C6 |
C5 |
N7 |
H15 |
0.0 |
0.3 |
| C6 |
C5 |
C4 |
N3 |
359.8 |
359.4 |
| C6 |
C5 |
N7 |
C4 |
180.2 |
180.3 |
| C5 |
N7 |
C8 |
H14 |
180.1 |
180.1 |
| N7 |
C5 |
C4 |
N3 |
179.9 |
179.6 |
| C6 |
N1 |
C2 |
H16 |
180.0 |
179.9 |
| N3 |
C2 |
N1 |
H17 |
180.0 |
180.0 |
| C4 |
C5 |
N7 |
H15 |
179.9 |
180.0 |
| C8 |
C9 |
C10 |
H12 |
25.8 |
140.0 |
| C8 |
C9 |
C10 |
H13 |
140.6 |
20.0 |
| N3 |
C2 |
N1 |
H16 |
180.1 |
180.0 |
| N1 |
C2 |
N3 |
H17 |
180.0 |
180.0 |
| C5 |
C4 |
N3 |
C2 |
0.2 |
0.7 |
| C4 |
C9 |
C10 |
H12 |
205.8 |
319.7 |
| C4 |
C9 |
C10 |
H13 |
320.6 |
199.7 |
| C4 |
N3 |
C2 |
H17 |
179.9 |
179.7 |
| C9 |
C10 |
N1' |
H11 |
169.9 |
306.8 |
| H12 |
C10 |
C9 |
H13 |
245.2 |
120.0 |
| C10 |
N1' |
C6' |
H5 |
328.8 |
83.3 |
| C10 |
N1' |
C6' |
H6 |
89.5 |
320.3 |
| C10 |
N1' |
C2' |
H9 |
286.3 |
25.1 |
| C10 |
N1' |
C2' |
H10 |
47.0 |
263.8 |
| N1' |
C6' |
C4' |
H4 |
242.7 |
279.0 |
| H5 |
C6' |
N1' |
H6 |
239.3 |
123.0 |
| C2' |
N1' |
C6' |
H5 |
91.7 |
202.3 |
| C2' |
N1' |
C6' |
H6 |
212.4 |
79.3 |
| N1' |
C2' |
C3' |
H7 |
203.1 |
239.8 |
| H9 |
C2' |
N1' |
H10 |
239.3 |
121.3 |
| C5' |
C4' |
C6' |
C3' |
123.5 |
118.4 |
| C6' |
C4' |
C5' |
H2 |
297.2 |
60.1 |
| C6' |
C4' |
C5' |
H3 |
181.9 |
300.0 |
| C5' |
C4' |
C6' |
H4 |
241.3 |
236.8 |
| C6' |
C4' |
C3' |
O3' |
258.6 |
219.1 |
| C3' |
C4' |
C6' |
H4 |
117.7 |
118.4 |
| C6' |
C4' |
C3' |
H7 |
136.9 |
97.1 |
| C2' |
C3' |
C4' |
H4 |
144.2 |
96.5 |
| C4' |
C3' |
C2' |
H7 |
110.5 |
119.0 |
| O3' |
C3' |
C2' |
H7 |
235.5 |
237.9 |
| C2' |
C3' |
O3' |
H8 |
180.0 |
64.3 |
| O5' |
C5' |
C4' |
C3' |
179.4 |
293.5 |
| C4' |
C5' |
O5' |
H2 |
237.6 |
240.0 |
| C4' |
C5' |
O5' |
H3 |
122.4 |
120.0 |
| O5' |
C5' |
C4' |
H4 |
300.6 |
56.7 |
| H2 |
C5' |
O5' |
H3 |
244.8 |
240.0 |
| C6' |
C4' |
C5' |
C3' |
240.2 |
246.5 |
| C6' |
C4' |
C5' |
H4 |
118.9 |
123.3 |
| C4' |
C5' |
O5' |
H1 |
180.0 |
179.9 |
| O5' |
C5' |
C4' |
H2 |
122.4 |
120.0 |
| O5' |
C5' |
C4' |
H3 |
237.6 |
240.1 |
| C5' |
C4' |
C3' |
O3' |
137.9 |
100.8 |
| C3' |
C4' |
C5' |
H4 |
238.7 |
236.8 |
| C5' |
C4' |
C3' |
H7 |
16.2 |
338.8 |
| H2 |
C5' |
C4' |
H3 |
115.2 |
120.1 |
| C6' |
C4' |
C3' |
H4 |
242.1 |
241.5 |
| C2' |
C3' |
C4' |
H7 |
249.3 |
240.9 |
| C3' |
C4' |
C5' |
H2 |
57.0 |
173.5 |
| C3' |
C4' |
C5' |
H3 |
301.8 |
53.4 |
| C5' |
C4' |
C3' |
H4 |
121.3 |
123.2 |
| O3' |
C3' |
C4' |
H7 |
121.7 |
122.0 |
| C4' |
C3' |
O3' |
H8 |
294.8 |
180.0 |
| C2' |
C3' |
O3' |
H7 |
124.1 |
122.2 |
| O3' |
C3' |
C4' |
H4 |
16.6 |
337.6 |
| C4' |
C3' |
O3' |
H7 |
238.9 |
238.0 |
| H1 |
O5' |
C5' |
C4' |
180.0 |
179.9 |
| H1 |
O5' |
C5' |
H2 |
302.4 |
299.9 |
| H1 |
O5' |
C5' |
H3 |
57.6 |
60.0 |
| O5' |
C5' |
H2 |
C4' |
223.9 |
240.0 |
| H2 |
C5' |
O5' |
H1 |
302.4 |
299.9 |
| O5' |
C5' |
H2 |
H3 |
111.9 |
120.0 |
| H2 |
C5' |
C4' |
C3' |
57.0 |
173.5 |
| C4' |
C5' |
H2 |
H3 |
248.1 |
239.9 |
| H2 |
C5' |
C4' |
H4 |
178.2 |
296.7 |
| O5' |
C5' |
H3 |
C4' |
136.1 |
119.9 |
| H3 |
C5' |
O5' |
H1 |
57.6 |
60.0 |
| O5' |
C5' |
H3 |
H2 |
248.1 |
240.0 |
| H3 |
C5' |
C4' |
C3' |
301.8 |
53.4 |
| C4' |
C5' |
H3 |
H2 |
111.9 |
120.1 |
| H3 |
C5' |
C4' |
H4 |
63.0 |
176.7 |
| C6' |
C4' |
H4 |
C3' |
116.9 |
113.6 |
| C5' |
C4' |
H4 |
C3' |
235.8 |
236.8 |
| H4 |
C4' |
C5' |
H2 |
178.2 |
296.7 |
| H4 |
C4' |
C5' |
H3 |
63.0 |
176.7 |
| H4 |
C4' |
C3' |
O3' |
16.6 |
337.6 |
| H4 |
C4' |
C3' |
H7 |
254.9 |
215.6 |
| N1' |
C6' |
H5 |
H6 |
121.0 |
236.8 |
| H5 |
C6' |
C4' |
C3' |
240.8 |
155.9 |
| H5 |
C6' |
C4' |
H4 |
123.1 |
37.4 |
| N1' |
C6' |
H6 |
H5 |
239.0 |
123.1 |
| H6 |
C6' |
C4' |
C3' |
120.0 |
278.8 |
| H6 |
C6' |
C4' |
H4 |
2.3 |
160.4 |
| C4' |
C3' |
H7 |
O3' |
126.4 |
122.0 |
| H7 |
C3' |
C4' |
H4 |
254.9 |
215.6 |
| H7 |
C3' |
O3' |
H8 |
56.0 |
302.0 |
| H8 |
O3' |
C3' |
H7 |
56.0 |
302.0 |
| N1' |
C2' |
H9 |
H10 |
121.1 |
238.7 |
| H9 |
C2' |
C3' |
H7 |
83.4 |
359.1 |
| N1' |
C2' |
H10 |
H9 |
238.9 |
121.2 |
| H10 |
C2' |
C3' |
H7 |
322.7 |
120.3 |
| H11 |
N1' |
C6' |
H5 |
206.8 |
321.4 |
| H11 |
N1' |
C6' |
H6 |
327.5 |
198.4 |
| H11 |
N1' |
C2' |
H9 |
52.4 |
146.9 |
| H11 |
N1' |
C2' |
H10 |
173.1 |
25.7 |
| C9 |
C10 |
H12 |
H13 |
111.0 |
240.0 |
| H12 |
C10 |
N1' |
H11 |
47.3 |
66.8 |
| C9 |
C10 |
H13 |
H12 |
249.0 |
120.0 |
| H13 |
C10 |
N1' |
H11 |
292.5 |
186.8 |
| H15 |
N7 |
C5 |
C4 |
179.9 |
180.0 |
| H15 |
N7 |
C8 |
H14 |
0.1 |
359.8 |
| C6 |
N1 |
H16 |
C2 |
180.0 |
180.1 |
| H16 |
N1 |
C2 |
N3 |
180.1 |
180.0 |
| H16 |
N1 |
C2 |
H17 |
0.1 |
0.1 |
| N1 |
C2 |
H17 |
N3 |
180.0 |
180.0 |
| H17 |
C2 |
N1 |
H16 |
0.1 |
0.1 |