PDB Chemical Component DIF
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DIF
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.418 |
1.382 |
C1 |
C6 |
1.415 |
1.382 |
C1 |
H1 |
1.103 |
1.080 |
C2 |
CL2 |
1.772 |
1.736 |
C2 |
C3 |
1.447 |
1.389 |
C3 |
C4 |
1.439 |
1.389 |
C3 |
N1 |
1.465 |
1.399 |
C4 |
CL4 |
1.773 |
1.736 |
C4 |
C5 |
1.419 |
1.382 |
C5 |
C6 |
1.412 |
1.382 |
C5 |
H5 |
1.104 |
1.080 |
C6 |
H6 |
1.104 |
1.080 |
N1 |
C8 |
1.463 |
1.395 |
N1 |
HN1 |
1.019 |
0.971 |
C7 |
C8 |
1.445 |
1.389 |
C7 |
C12 |
1.428 |
1.380 |
C7 |
C13 |
1.552 |
1.507 |
C8 |
C9 |
1.429 |
1.390 |
C9 |
C10 |
1.412 |
1.381 |
C9 |
H9 |
1.103 |
1.079 |
C10 |
C11 |
1.414 |
1.383 |
C10 |
H10 |
1.103 |
1.080 |
C11 |
C12 |
1.415 |
1.383 |
C11 |
H11 |
1.102 |
1.080 |
C12 |
H12 |
1.103 |
1.080 |
C13 |
C14 |
1.515 |
1.506 |
C13 |
H131 |
1.116 |
1.091 |
C13 |
H132 |
1.114 |
1.090 |
C14 |
O1 |
1.248 |
1.343 |
C14 |
O2 |
1.244 |
1.208 |
O1 |
HO1 |
0.951 |
0.967 |
Bond Angles for DIF
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C6 |
120.6 |
120.1 |
C2 |
C1 |
H1 |
119.8 |
120.0 |
C1 |
C2 |
CL2 |
115.8 |
120.1 |
C1 |
C2 |
C3 |
120.0 |
119.9 |
C6 |
C1 |
H1 |
119.6 |
119.9 |
C1 |
C6 |
C5 |
120.1 |
120.2 |
C1 |
C6 |
H6 |
120.1 |
119.9 |
CL2 |
C2 |
C3 |
124.1 |
120.0 |
C2 |
C3 |
C4 |
118.5 |
119.8 |
C2 |
C3 |
N1 |
123.4 |
120.1 |
C4 |
C3 |
N1 |
118.1 |
120.0 |
C3 |
C4 |
CL4 |
122.6 |
120.1 |
C3 |
C4 |
C5 |
120.4 |
119.9 |
C3 |
N1 |
C8 |
137.2 |
120.0 |
C3 |
N1 |
HN1 |
102.7 |
119.9 |
CL4 |
C4 |
C5 |
117.1 |
120.1 |
C4 |
C5 |
C6 |
120.4 |
120.1 |
C4 |
C5 |
H5 |
120.0 |
119.9 |
C6 |
C5 |
H5 |
119.5 |
120.0 |
C5 |
C6 |
H6 |
119.8 |
119.9 |
C8 |
N1 |
HN1 |
102.8 |
120.1 |
N1 |
C8 |
C7 |
119.5 |
120.1 |
N1 |
C8 |
C9 |
121.3 |
120.1 |
C8 |
C7 |
C12 |
119.2 |
120.0 |
C8 |
C7 |
C13 |
124.3 |
120.0 |
C7 |
C8 |
C9 |
119.2 |
119.8 |
C12 |
C7 |
C13 |
116.4 |
120.0 |
C7 |
C12 |
C11 |
120.5 |
120.1 |
C7 |
C12 |
H12 |
120.1 |
120.0 |
C7 |
C13 |
C14 |
116.2 |
109.5 |
C7 |
C13 |
H131 |
109.8 |
109.5 |
C7 |
C13 |
H132 |
109.8 |
109.5 |
C8 |
C9 |
C10 |
120.5 |
119.9 |
C8 |
C9 |
H9 |
120.3 |
120.0 |
C10 |
C9 |
H9 |
119.2 |
120.1 |
C9 |
C10 |
C11 |
120.4 |
120.1 |
C9 |
C10 |
H10 |
119.7 |
119.9 |
C11 |
C10 |
H10 |
119.9 |
120.0 |
C10 |
C11 |
C12 |
120.1 |
120.1 |
C10 |
C11 |
H11 |
119.9 |
119.9 |
C12 |
C11 |
H11 |
120.0 |
119.9 |
C11 |
C12 |
H12 |
119.3 |
119.9 |
C14 |
C13 |
H131 |
109.7 |
109.4 |
C14 |
C13 |
H132 |
109.7 |
109.5 |
C13 |
C14 |
O1 |
118.8 |
120.0 |
C13 |
C14 |
O2 |
117.9 |
120.0 |
H131 |
C13 |
H132 |
100.4 |
109.5 |
O1 |
C14 |
O2 |
123.2 |
120.0 |
C14 |
O1 |
HO1 |
118.8 |
120.0 |
Torsion Angles for DIF
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
C1 |
C2 |
H1 |
180.0 |
180.0 |
C2 |
C1 |
C6 |
C5 |
359.3 |
0.0 |
C2 |
C1 |
C6 |
H6 |
179.3 |
180.0 |
CL2 |
C2 |
C1 |
C3 |
175.9 |
180.0 |
C1 |
C2 |
C3 |
C4 |
359.5 |
0.4 |
C1 |
C2 |
C3 |
N1 |
181.2 |
180.1 |
C2 |
C1 |
C6 |
H1 |
180.0 |
180.0 |
C6 |
C1 |
C2 |
CL2 |
176.7 |
180.0 |
C6 |
C1 |
C2 |
C3 |
0.8 |
359.9 |
C4 |
C5 |
C6 |
C1 |
0.3 |
359.7 |
C1 |
C6 |
C5 |
H5 |
180.3 |
180.0 |
C5 |
C6 |
C1 |
H6 |
180.0 |
180.0 |
C2 |
C1 |
H1 |
C6 |
180.0 |
180.0 |
H1 |
C1 |
C2 |
CL2 |
356.7 |
0.0 |
H1 |
C1 |
C2 |
C3 |
180.8 |
180.0 |
H1 |
C1 |
C6 |
C5 |
179.3 |
180.0 |
H1 |
C1 |
C6 |
H6 |
359.3 |
359.9 |
CL2 |
C2 |
C1 |
C6 |
176.7 |
180.0 |
CL2 |
C2 |
C1 |
H1 |
356.7 |
0.0 |
C1 |
C2 |
CL2 |
C3 |
184.3 |
180.0 |
CL2 |
C2 |
C3 |
C4 |
184.0 |
180.3 |
CL2 |
C2 |
C3 |
N1 |
5.6 |
0.0 |
C3 |
C2 |
C1 |
C6 |
0.8 |
359.9 |
C3 |
C2 |
C1 |
H1 |
180.8 |
180.0 |
C1 |
C2 |
C3 |
CL2 |
175.5 |
180.0 |
C4 |
C3 |
C2 |
N1 |
178.4 |
180.3 |
C2 |
C3 |
C4 |
CL4 |
180.5 |
179.9 |
C2 |
C3 |
C4 |
C5 |
0.1 |
359.4 |
C2 |
C3 |
N1 |
C8 |
56.4 |
120.1 |
C2 |
C3 |
N1 |
HN1 |
291.1 |
300.0 |
C2 |
C3 |
C4 |
N1 |
181.5 |
179.7 |
C4 |
C3 |
N1 |
C8 |
238.0 |
299.8 |
C4 |
C3 |
N1 |
HN1 |
112.7 |
119.8 |
CL4 |
C4 |
C3 |
C5 |
180.5 |
180.5 |
C3 |
C4 |
C5 |
C6 |
0.0 |
0.5 |
C3 |
C4 |
C5 |
H5 |
180.0 |
180.3 |
C2 |
C3 |
N1 |
C4 |
178.4 |
180.3 |
N1 |
C3 |
C4 |
CL4 |
359.0 |
0.2 |
N1 |
C3 |
C4 |
C5 |
178.5 |
179.7 |
C8 |
N1 |
C3 |
HN1 |
125.3 |
180.0 |
C3 |
N1 |
C8 |
C7 |
198.9 |
179.4 |
C3 |
N1 |
C8 |
C9 |
19.0 |
360.0 |
CL4 |
C4 |
C3 |
N1 |
359.0 |
0.2 |
C3 |
C4 |
CL4 |
C5 |
179.6 |
179.5 |
CL4 |
C4 |
C5 |
C6 |
179.6 |
180.0 |
CL4 |
C4 |
C5 |
H5 |
359.6 |
359.8 |
C1 |
C6 |
C5 |
C4 |
0.3 |
359.7 |
C5 |
C4 |
C3 |
N1 |
178.5 |
179.7 |
C3 |
C4 |
C5 |
CL4 |
180.4 |
180.5 |
C6 |
C5 |
C4 |
H5 |
180.0 |
180.2 |
C4 |
C5 |
C6 |
H6 |
180.3 |
179.8 |
C5 |
C6 |
C1 |
H1 |
179.3 |
180.0 |
C1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
C4 |
C5 |
C6 |
H5 |
180.0 |
179.8 |
C4 |
C5 |
H5 |
C6 |
180.0 |
180.2 |
H5 |
C5 |
C6 |
H6 |
0.3 |
0.0 |
H6 |
C6 |
C1 |
H1 |
359.3 |
359.9 |
C1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
H6 |
C6 |
C5 |
H5 |
0.3 |
0.0 |
C3 |
N1 |
C8 |
HN1 |
234.7 |
180.0 |
N1 |
C8 |
C7 |
C12 |
180.0 |
179.9 |
N1 |
C8 |
C7 |
C13 |
0.3 |
0.3 |
C7 |
C8 |
N1 |
C9 |
180.0 |
179.5 |
N1 |
C8 |
C9 |
C10 |
180.1 |
180.1 |
N1 |
C8 |
C9 |
H9 |
0.1 |
359.8 |
C3 |
N1 |
HN1 |
C8 |
145.4 |
180.0 |
HN1 |
N1 |
C8 |
C7 |
324.2 |
359.5 |
HN1 |
N1 |
C8 |
C9 |
144.3 |
180.0 |
C7 |
C8 |
N1 |
HN1 |
324.2 |
359.5 |
N1 |
C8 |
C7 |
C9 |
180.0 |
180.5 |
C12 |
C7 |
C8 |
C13 |
179.6 |
179.7 |
C8 |
C7 |
C12 |
C11 |
360.0 |
0.3 |
C8 |
C7 |
C12 |
H12 |
180.0 |
180.4 |
C8 |
C7 |
C13 |
C14 |
292.7 |
269.7 |
C8 |
C7 |
C13 |
H131 |
57.9 |
149.7 |
C8 |
C7 |
C13 |
H132 |
167.5 |
29.7 |
C7 |
C8 |
C9 |
C10 |
0.2 |
0.6 |
C7 |
C8 |
C9 |
H9 |
180.2 |
180.3 |
C8 |
C7 |
C12 |
C13 |
180.3 |
180.3 |
C12 |
C7 |
C8 |
C9 |
360.0 |
359.4 |
C12 |
C7 |
C13 |
C14 |
113.1 |
90.0 |
C12 |
C7 |
C13 |
H131 |
238.3 |
330.1 |
C12 |
C7 |
C13 |
H132 |
347.8 |
210.0 |
C10 |
C11 |
C12 |
C7 |
360.0 |
360.0 |
C7 |
C12 |
C11 |
H11 |
180.0 |
179.9 |
C11 |
C12 |
C7 |
H12 |
180.0 |
180.0 |
C8 |
C7 |
C13 |
C12 |
179.7 |
179.7 |
C13 |
C7 |
C8 |
C9 |
180.3 |
179.7 |
C13 |
C7 |
C12 |
C11 |
179.7 |
180.0 |
C13 |
C7 |
C12 |
H12 |
359.6 |
0.0 |
C14 |
C13 |
C7 |
H131 |
234.8 |
119.9 |
C14 |
C13 |
C7 |
H132 |
125.3 |
240.0 |
C7 |
C13 |
C14 |
O1 |
268.2 |
180.0 |
C7 |
C13 |
C14 |
O2 |
89.6 |
0.1 |
H131 |
C13 |
C7 |
H132 |
250.5 |
120.0 |
C9 |
C8 |
N1 |
HN1 |
144.3 |
180.0 |
N1 |
C8 |
C9 |
C7 |
180.0 |
179.5 |
C9 |
C8 |
C7 |
C12 |
360.0 |
359.4 |
C9 |
C8 |
C7 |
C13 |
180.3 |
179.7 |
C10 |
C9 |
C8 |
H9 |
180.0 |
180.3 |
C8 |
C9 |
C10 |
C11 |
359.8 |
359.7 |
C8 |
C9 |
C10 |
H10 |
179.8 |
179.7 |
C8 |
C9 |
C10 |
H9 |
180.0 |
179.7 |
C11 |
C10 |
C9 |
H10 |
180.0 |
180.0 |
C9 |
C10 |
C11 |
C12 |
0.1 |
0.0 |
C9 |
C10 |
C11 |
H11 |
180.2 |
180.0 |
C8 |
C9 |
H9 |
C10 |
180.0 |
180.3 |
H9 |
C9 |
C10 |
C11 |
179.8 |
180.0 |
H9 |
C9 |
C10 |
H10 |
359.8 |
0.0 |
C7 |
C12 |
C11 |
C10 |
360.0 |
360.0 |
C11 |
C10 |
C9 |
H9 |
179.8 |
180.0 |
C9 |
C10 |
C11 |
H10 |
180.0 |
180.0 |
C12 |
C11 |
C10 |
H11 |
180.0 |
180.0 |
C10 |
C11 |
C12 |
H12 |
180.0 |
179.9 |
H10 |
C10 |
C9 |
H9 |
359.8 |
0.0 |
C9 |
C10 |
H10 |
C11 |
180.0 |
180.0 |
H10 |
C10 |
C11 |
C12 |
180.1 |
180.0 |
H10 |
C10 |
C11 |
H11 |
0.1 |
0.0 |
C11 |
C12 |
C7 |
C13 |
179.7 |
180.0 |
C7 |
C12 |
C11 |
H12 |
180.0 |
180.0 |
C12 |
C11 |
C10 |
H10 |
180.1 |
180.0 |
C10 |
C11 |
C12 |
H11 |
180.0 |
180.0 |
H11 |
C11 |
C10 |
H10 |
0.1 |
0.0 |
C10 |
C11 |
H11 |
C12 |
180.0 |
180.0 |
H11 |
C11 |
C12 |
H12 |
360.0 |
359.9 |
H12 |
C12 |
C7 |
C13 |
359.6 |
0.0 |
C7 |
C12 |
H12 |
C11 |
180.0 |
180.0 |
H12 |
C12 |
C11 |
H11 |
360.0 |
359.9 |
C7 |
C13 |
C14 |
H131 |
125.3 |
240.0 |
C7 |
C13 |
C14 |
H132 |
234.7 |
120.1 |
H131 |
C13 |
C14 |
H132 |
109.5 |
240.0 |
O1 |
C14 |
C13 |
O2 |
178.5 |
180.0 |
C13 |
C14 |
O1 |
HO1 |
180.0 |
180.0 |
C7 |
C13 |
H131 |
C14 |
231.1 |
120.0 |
C7 |
C13 |
H131 |
H132 |
115.6 |
239.9 |
C14 |
C13 |
H131 |
H132 |
244.5 |
120.0 |
H131 |
C13 |
C14 |
O1 |
142.9 |
300.0 |
H131 |
C13 |
C14 |
O2 |
324.4 |
120.0 |
C7 |
C13 |
H132 |
C14 |
128.9 |
240.0 |
C7 |
C13 |
H132 |
H131 |
244.4 |
120.0 |
C14 |
C13 |
H132 |
H131 |
115.5 |
240.1 |
H132 |
C13 |
C14 |
O1 |
33.4 |
60.0 |
H132 |
C13 |
C14 |
O2 |
214.9 |
240.0 |
O1 |
C14 |
C13 |
H131 |
142.9 |
300.0 |
O1 |
C14 |
C13 |
H132 |
33.4 |
60.0 |
C13 |
C14 |
O1 |
O2 |
181.6 |
180.0 |
O2 |
C14 |
C13 |
H131 |
324.4 |
120.0 |
O2 |
C14 |
C13 |
H132 |
214.9 |
240.0 |
C13 |
C14 |
O2 |
O1 |
178.4 |
180.0 |
O2 |
C14 |
O1 |
HO1 |
358.4 |
360.0 |
HO1 |
O1 |
C14 |
O2 |
358.4 |
360.0 |