PDB Chemical Component DIB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DIB
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.469 |
1.468 |
| N |
H |
1.019 |
1.008 |
| N |
HN2 |
1.019 |
1.009 |
| CA |
CB |
1.533 |
1.529 |
| CA |
HA1 |
1.114 |
1.090 |
| CA |
HA2 |
1.115 |
1.090 |
| CB |
CG |
1.538 |
1.529 |
| CB |
HB1 |
1.115 |
1.090 |
| CB |
HB2 |
1.115 |
1.090 |
| CG |
ND |
1.516 |
1.469 |
| CG |
HG1 |
1.115 |
1.090 |
| CG |
HG2 |
1.116 |
1.089 |
| ND |
CE1 |
1.472 |
1.468 |
| ND |
CE2 |
1.470 |
1.469 |
| CE1 |
HE11 |
1.115 |
1.089 |
| CE1 |
HE12 |
1.115 |
1.089 |
| CE1 |
HE13 |
1.115 |
1.090 |
| CE2 |
HE21 |
1.115 |
1.090 |
| CE2 |
HE22 |
1.115 |
1.090 |
| CE2 |
HE23 |
1.114 |
1.090 |
Bond Angles for DIB
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
115.5 |
106.7 |
| CA |
N |
HN2 |
110.0 |
106.7 |
| N |
CA |
CB |
115.5 |
109.6 |
| N |
CA |
HA1 |
110.0 |
109.5 |
| N |
CA |
HA2 |
110.0 |
109.5 |
| H |
N |
HN2 |
110.0 |
106.7 |
| CB |
CA |
HA1 |
110.0 |
109.4 |
| CB |
CA |
HA2 |
110.0 |
109.4 |
| CA |
CB |
CG |
113.1 |
109.5 |
| CA |
CB |
HB1 |
110.9 |
109.4 |
| CA |
CB |
HB2 |
110.9 |
109.5 |
| HA1 |
CA |
HA2 |
100.3 |
109.5 |
| CG |
CB |
HB1 |
110.8 |
109.5 |
| CG |
CB |
HB2 |
110.9 |
109.5 |
| CB |
CG |
ND |
116.6 |
109.5 |
| CB |
CG |
HG1 |
109.6 |
109.5 |
| CB |
CG |
HG2 |
109.6 |
109.5 |
| HB1 |
CB |
HB2 |
99.4 |
109.4 |
| ND |
CG |
HG1 |
109.7 |
109.4 |
| ND |
CG |
HG2 |
109.7 |
109.5 |
| CG |
ND |
CE1 |
110.7 |
106.8 |
| CG |
ND |
CE2 |
111.8 |
106.7 |
| HG1 |
CG |
HG2 |
100.5 |
109.4 |
| CE1 |
ND |
CE2 |
112.3 |
106.7 |
| ND |
CE1 |
HE11 |
110.7 |
109.5 |
| ND |
CE1 |
HE12 |
111.8 |
109.4 |
| ND |
CE1 |
HE13 |
111.7 |
109.5 |
| ND |
CE2 |
HE21 |
111.8 |
109.6 |
| ND |
CE2 |
HE22 |
111.3 |
109.5 |
| ND |
CE2 |
HE23 |
111.4 |
109.5 |
| HE11 |
CE1 |
HE12 |
111.7 |
109.5 |
| HE11 |
CE1 |
HE13 |
111.7 |
109.5 |
| HE12 |
CE1 |
HE13 |
98.6 |
109.4 |
| HE21 |
CE2 |
HE22 |
111.3 |
109.5 |
| HE21 |
CE2 |
HE23 |
111.4 |
109.4 |
| HE22 |
CE2 |
HE23 |
99.0 |
109.4 |
Torsion Angles for DIB
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
HN2 |
125.3 |
246.2 |
| CB |
CA |
N |
HA1 |
234.7 |
120.0 |
| CB |
CA |
N |
HA2 |
125.2 |
240.0 |
| N |
CA |
CB |
CG |
273.1 |
180.0 |
| N |
CA |
CB |
HB1 |
38.3 |
60.0 |
| N |
CA |
CB |
HB2 |
147.8 |
300.1 |
| HA1 |
CA |
N |
HA2 |
250.5 |
120.0 |
| CA |
N |
H |
HN2 |
234.7 |
113.7 |
| H |
N |
CA |
CB |
180.0 |
180.0 |
| H |
N |
CA |
HA1 |
305.3 |
60.0 |
| H |
N |
CA |
HA2 |
54.8 |
300.0 |
| CA |
N |
HN2 |
H |
128.3 |
246.2 |
| HN2 |
N |
CA |
CB |
54.7 |
293.8 |
| HN2 |
N |
CA |
HA1 |
180.0 |
173.8 |
| HN2 |
N |
CA |
HA2 |
289.5 |
53.8 |
| CB |
CA |
N |
H |
180.0 |
180.0 |
| CB |
CA |
N |
HN2 |
54.7 |
293.8 |
| N |
CA |
CB |
HA1 |
125.3 |
240.0 |
| N |
CA |
CB |
HA2 |
234.8 |
120.0 |
| HA1 |
CA |
CB |
HA2 |
109.5 |
240.1 |
| CG |
CB |
CA |
HB1 |
234.8 |
120.0 |
| CG |
CB |
CA |
HB2 |
125.2 |
239.9 |
| CA |
CB |
CG |
ND |
281.2 |
180.0 |
| CA |
CB |
CG |
HG1 |
46.5 |
60.0 |
| CA |
CB |
CG |
HG2 |
155.9 |
300.0 |
| HB1 |
CB |
CA |
HB2 |
250.5 |
119.9 |
| HA1 |
CA |
N |
H |
305.3 |
60.0 |
| HA1 |
CA |
N |
HN2 |
180.0 |
173.8 |
| N |
CA |
HA1 |
CB |
231.7 |
120.1 |
| N |
CA |
HA1 |
HA2 |
115.8 |
240.0 |
| CB |
CA |
HA1 |
HA2 |
244.2 |
119.9 |
| HA1 |
CA |
CB |
CG |
147.8 |
300.0 |
| HA1 |
CA |
CB |
HB1 |
273.0 |
180.0 |
| HA1 |
CA |
CB |
HB2 |
22.6 |
60.1 |
| HA2 |
CA |
N |
H |
54.8 |
300.0 |
| HA2 |
CA |
N |
HN2 |
289.5 |
53.8 |
| N |
CA |
HA2 |
CB |
128.3 |
239.9 |
| N |
CA |
HA2 |
HA1 |
244.2 |
120.0 |
| CB |
CA |
HA2 |
HA1 |
115.9 |
240.1 |
| HA2 |
CA |
CB |
CG |
38.3 |
60.0 |
| HA2 |
CA |
CB |
HB1 |
163.5 |
299.9 |
| HA2 |
CA |
CB |
HB2 |
273.1 |
180.0 |
| CG |
CB |
CA |
HA1 |
147.8 |
300.0 |
| CG |
CB |
CA |
HA2 |
38.3 |
60.0 |
| CA |
CB |
CG |
HB1 |
125.3 |
240.0 |
| CA |
CB |
CG |
HB2 |
234.7 |
120.1 |
| HB1 |
CB |
CG |
HB2 |
109.4 |
240.1 |
| ND |
CG |
CB |
HG1 |
234.7 |
120.0 |
| ND |
CG |
CB |
HG2 |
125.3 |
239.9 |
| CB |
CG |
ND |
CE1 |
207.3 |
180.0 |
| CB |
CG |
ND |
CE2 |
333.3 |
293.8 |
| HG1 |
CG |
CB |
HG2 |
250.6 |
120.0 |
| HB1 |
CB |
CA |
HA1 |
273.0 |
180.0 |
| HB1 |
CB |
CA |
HA2 |
163.5 |
299.9 |
| CA |
CB |
HB1 |
CG |
233.5 |
120.1 |
| CA |
CB |
HB1 |
HB2 |
116.8 |
240.1 |
| CG |
CB |
HB1 |
HB2 |
243.3 |
120.0 |
| HB1 |
CB |
CG |
ND |
155.9 |
300.0 |
| HB1 |
CB |
CG |
HG1 |
281.2 |
180.0 |
| HB1 |
CB |
CG |
HG2 |
30.6 |
60.0 |
| HB2 |
CB |
CA |
HA1 |
22.6 |
60.1 |
| HB2 |
CB |
CA |
HA2 |
273.1 |
180.0 |
| CA |
CB |
HB2 |
CG |
126.5 |
239.9 |
| CA |
CB |
HB2 |
HB1 |
243.2 |
119.9 |
| CG |
CB |
HB2 |
HB1 |
116.7 |
240.0 |
| HB2 |
CB |
CG |
ND |
46.4 |
59.9 |
| HB2 |
CB |
CG |
HG1 |
171.7 |
299.9 |
| HB2 |
CB |
CG |
HG2 |
281.2 |
180.0 |
| ND |
CG |
CB |
HB1 |
155.9 |
300.0 |
| ND |
CG |
CB |
HB2 |
46.4 |
59.9 |
| CB |
CG |
ND |
HG1 |
125.3 |
240.0 |
| CB |
CG |
ND |
HG2 |
234.8 |
120.1 |
| HG1 |
CG |
ND |
HG2 |
109.5 |
240.1 |
| CE1 |
ND |
CG |
CE2 |
233.9 |
246.2 |
| CG |
ND |
CE1 |
HE11 |
180.0 |
180.0 |
| CG |
ND |
CE1 |
HE12 |
305.3 |
300.0 |
| CG |
ND |
CE1 |
HE13 |
54.7 |
60.0 |
| CG |
ND |
CE2 |
HE21 |
180.0 |
66.1 |
| CG |
ND |
CE2 |
HE22 |
305.2 |
186.3 |
| CG |
ND |
CE2 |
HE23 |
54.7 |
306.2 |
| HG1 |
CG |
CB |
HB1 |
281.2 |
180.0 |
| HG1 |
CG |
CB |
HB2 |
171.7 |
299.9 |
| CB |
CG |
HG1 |
ND |
230.8 |
120.0 |
| CB |
CG |
HG1 |
HG2 |
115.4 |
240.0 |
| ND |
CG |
HG1 |
HG2 |
244.6 |
120.0 |
| HG1 |
CG |
ND |
CE1 |
82.0 |
300.0 |
| HG1 |
CG |
ND |
CE2 |
208.0 |
53.8 |
| HG2 |
CG |
CB |
HB1 |
30.6 |
60.0 |
| HG2 |
CG |
CB |
HB2 |
281.2 |
180.0 |
| CB |
CG |
HG2 |
ND |
129.2 |
239.9 |
| CB |
CG |
HG2 |
HG1 |
244.6 |
120.0 |
| ND |
CG |
HG2 |
HG1 |
115.4 |
240.1 |
| HG2 |
CG |
ND |
CE1 |
332.5 |
60.0 |
| HG2 |
CG |
ND |
CE2 |
98.5 |
173.8 |
| CE1 |
ND |
CG |
HG1 |
82.0 |
300.0 |
| CE1 |
ND |
CG |
HG2 |
332.5 |
60.0 |
| CG |
ND |
CE1 |
CE2 |
125.7 |
113.8 |
| CE1 |
ND |
CE2 |
HE21 |
305.2 |
180.0 |
| CE1 |
ND |
CE2 |
HE22 |
70.4 |
300.1 |
| CE1 |
ND |
CE2 |
HE23 |
179.9 |
60.0 |
| HE11 |
CE1 |
ND |
HE12 |
234.7 |
239.9 |
| HE11 |
CE1 |
ND |
HE13 |
125.3 |
120.0 |
| HE12 |
CE1 |
ND |
HE13 |
250.6 |
240.1 |
| CE2 |
ND |
CG |
HG1 |
208.0 |
53.8 |
| CE2 |
ND |
CG |
HG2 |
98.5 |
173.8 |
| CG |
ND |
CE2 |
CE1 |
234.8 |
246.1 |
| CE2 |
ND |
CE1 |
HE11 |
54.2 |
66.2 |
| CE2 |
ND |
CE1 |
HE12 |
179.5 |
186.2 |
| CE2 |
ND |
CE1 |
HE13 |
289.0 |
306.2 |
| HE21 |
CE2 |
ND |
HE22 |
234.8 |
239.9 |
| HE21 |
CE2 |
ND |
HE23 |
125.3 |
120.0 |
| HE22 |
CE2 |
ND |
HE23 |
250.5 |
240.1 |
| HE11 |
CE1 |
ND |
CE2 |
54.2 |
66.2 |
| ND |
CE1 |
HE11 |
HE12 |
125.3 |
120.0 |
| ND |
CE1 |
HE11 |
HE13 |
234.7 |
240.0 |
| HE12 |
CE1 |
HE11 |
HE13 |
109.4 |
120.0 |
| HE12 |
CE1 |
ND |
CE2 |
179.5 |
186.2 |
| ND |
CE1 |
HE12 |
HE11 |
235.2 |
239.9 |
| ND |
CE1 |
HE12 |
HE13 |
117.6 |
119.9 |
| HE11 |
CE1 |
HE12 |
HE13 |
242.4 |
240.0 |
| HE13 |
CE1 |
ND |
CE2 |
289.0 |
306.2 |
| ND |
CE1 |
HE13 |
HE11 |
124.7 |
120.0 |
| ND |
CE1 |
HE13 |
HE12 |
242.3 |
240.1 |
| HE11 |
CE1 |
HE13 |
HE12 |
117.6 |
120.0 |
| ND |
CE2 |
HE21 |
HE22 |
125.2 |
120.1 |
| ND |
CE2 |
HE21 |
HE23 |
234.7 |
240.0 |
| HE22 |
CE2 |
HE21 |
HE23 |
109.5 |
119.9 |
| ND |
CE2 |
HE22 |
HE21 |
234.6 |
239.9 |
| ND |
CE2 |
HE22 |
HE23 |
117.3 |
119.9 |
| HE21 |
CE2 |
HE22 |
HE23 |
242.7 |
240.1 |
| ND |
CE2 |
HE23 |
HE21 |
125.5 |
120.1 |
| ND |
CE2 |
HE23 |
HE22 |
242.8 |
240.0 |
| HE21 |
CE2 |
HE23 |
HE22 |
117.3 |
120.0 |