PDB Chemical Component DI7
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DI7
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CA |
C |
1.529 |
1.507 |
| C |
O |
1.347 |
1.209 |
| C |
OXT |
1.229 |
1.342 |
| N |
CA |
1.478 |
1.469 |
| N |
H |
1.000 |
1.010 |
| N |
H2 |
1.000 |
1.009 |
| OXT |
HXT |
0.950 |
0.967 |
| CA |
CB |
1.556 |
1.530 |
| CA |
HA |
1.100 |
1.090 |
| CB |
CD |
1.393 |
1.507 |
| CB |
HB |
1.100 |
1.089 |
| CB |
HBA |
1.100 |
1.090 |
| CD1 |
CD |
1.409 |
1.383 |
| CD |
CD2 |
1.411 |
1.382 |
| CZ |
OH |
1.357 |
1.359 |
| OH |
HOH |
0.950 |
0.967 |
| CE1 |
CZ |
1.385 |
1.388 |
| CZ |
CE2 |
1.377 |
1.388 |
| CE3 |
CD1 |
1.406 |
1.506 |
| CD1 |
CE1 |
1.398 |
1.381 |
| CD2 |
CE2 |
1.388 |
1.381 |
| CD2 |
CE4 |
1.398 |
1.507 |
| CE1 |
HE1 |
1.080 |
1.080 |
| CE2 |
HE2 |
1.080 |
1.080 |
| CE3 |
HE3 |
1.100 |
1.090 |
| CE3 |
HE3A |
1.100 |
1.090 |
| CE3 |
HE3B |
1.100 |
1.090 |
| CE4 |
HE4 |
1.100 |
1.091 |
| CE4 |
HE4A |
1.100 |
1.090 |
| CE4 |
HE4B |
1.100 |
1.089 |
Bond Angles for DI7
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
C |
OXT |
118.8 |
120.0 |
| O |
C |
OXT |
122.2 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.0 |
| N |
CA |
CB |
110.8 |
109.5 |
| N |
CA |
HA |
109.8 |
109.5 |
| H |
N |
H2 |
109.5 |
110.9 |
| CB |
CA |
HA |
108.7 |
109.5 |
| CA |
CB |
CD |
111.0 |
109.5 |
| CA |
CB |
HB |
109.1 |
109.5 |
| CA |
CB |
HBA |
109.1 |
109.5 |
| CD |
CB |
HB |
109.1 |
109.5 |
| CD |
CB |
HBA |
109.1 |
109.4 |
| CB |
CD |
CD2 |
120.7 |
120.0 |
| HB |
CB |
HBA |
109.5 |
109.5 |
| CD1 |
CD |
CD2 |
118.0 |
120.1 |
| CD |
CD2 |
CE2 |
120.8 |
120.1 |
| CD |
CD2 |
CE4 |
123.0 |
120.0 |
| CZ |
OH |
HOH |
109.5 |
114.0 |
| CE1 |
CZ |
CE2 |
119.5 |
119.8 |
| CZ |
CE2 |
CD2 |
120.7 |
119.9 |
| CZ |
CE2 |
HE2 |
119.6 |
120.0 |
| CD1 |
CE1 |
HE1 |
119.5 |
120.0 |
| CE2 |
CD2 |
CE4 |
116.2 |
119.9 |
| CD2 |
CE2 |
HE2 |
119.6 |
120.1 |
| CD2 |
CE4 |
HE4 |
109.5 |
109.5 |
| CD2 |
CE4 |
HE4A |
109.5 |
109.5 |
| CD2 |
CE4 |
HE4B |
109.4 |
109.5 |
| HE3 |
CE3 |
HE3A |
109.5 |
109.5 |
| HE3 |
CE3 |
HE3B |
109.4 |
109.4 |
| HE3A |
CE3 |
HE3B |
109.5 |
109.4 |
| HE4 |
CE4 |
HE4A |
109.5 |
109.4 |
| HE4 |
CE4 |
HE4B |
109.5 |
109.5 |
| HE4A |
CE4 |
HE4B |
109.5 |
109.5 |
Torsion Angles for DI7
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
CA |
OXT |
180.0 |
179.7 |
| CA |
C |
OXT |
HXT |
180.0 |
179.7 |
| CA |
C |
O |
OXT |
180.0 |
180.3 |
| O |
C |
OXT |
HXT |
360.0 |
360.0 |
| N |
CA |
C |
OXT |
318.3 |
160.3 |
| H |
N |
CA |
H2 |
240.0 |
236.1 |
| CB |
CA |
N |
HA |
120.1 |
120.0 |
| N |
CA |
CB |
CD |
191.9 |
294.2 |
| N |
CA |
CB |
HB |
312.1 |
54.2 |
| N |
CA |
CB |
HBA |
71.6 |
174.3 |
| CA |
N |
H |
H2 |
120.0 |
123.9 |
| H |
N |
CA |
CB |
58.6 |
172.7 |
| H |
N |
CA |
HA |
298.5 |
52.8 |
| CA |
N |
H2 |
H |
240.0 |
236.1 |
| H2 |
N |
CA |
CB |
178.6 |
296.6 |
| H2 |
N |
CA |
HA |
58.5 |
176.7 |
| CB |
CA |
C |
OXT |
79.6 |
280.3 |
| CB |
CA |
N |
H |
58.6 |
172.7 |
| CB |
CA |
N |
H2 |
178.6 |
296.6 |
| N |
CA |
CB |
HA |
239.3 |
240.0 |
| CD |
CB |
CA |
HB |
239.8 |
240.0 |
| CD |
CB |
CA |
HBA |
120.3 |
120.0 |
| CA |
CB |
CD |
CD2 |
256.1 |
275.7 |
| HB |
CB |
CA |
HBA |
240.5 |
240.0 |
| HA |
CA |
C |
OXT |
199.4 |
40.2 |
| HA |
CA |
N |
H |
298.5 |
52.8 |
| HA |
CA |
N |
H2 |
58.5 |
176.7 |
| N |
CA |
HA |
CB |
121.3 |
120.0 |
| HA |
CA |
CB |
CD |
312.6 |
54.2 |
| HA |
CA |
CB |
HB |
72.8 |
174.2 |
| HA |
CA |
CB |
HBA |
192.3 |
294.3 |
| CD |
CB |
CA |
HA |
312.6 |
54.2 |
| CA |
CB |
CD |
HB |
120.2 |
120.0 |
| CA |
CB |
CD |
HBA |
239.8 |
240.0 |
| HB |
CB |
CD |
HBA |
119.5 |
120.0 |
| CD1 |
CD |
CB |
CD2 |
182.1 |
180.3 |
| CB |
CD |
CD2 |
CE2 |
181.0 |
180.0 |
| CB |
CD |
CD2 |
CE4 |
1.2 |
0.0 |
| HB |
CB |
CA |
HA |
72.8 |
174.2 |
| CA |
CB |
HB |
CD |
238.6 |
240.0 |
| CA |
CB |
HB |
HBA |
119.3 |
120.0 |
| CD |
CB |
HB |
HBA |
240.7 |
240.0 |
| HB |
CB |
CD |
CD2 |
135.9 |
155.7 |
| HBA |
CB |
CA |
HA |
192.3 |
294.3 |
| CA |
CB |
HBA |
CD |
121.4 |
120.0 |
| CA |
CB |
HBA |
HB |
240.7 |
240.0 |
| CD |
CB |
HBA |
HB |
119.3 |
120.0 |
| HBA |
CB |
CD |
CD2 |
16.4 |
35.6 |
| CD1 |
CD |
CB |
HB |
318.0 |
336.0 |
| CD1 |
CD |
CB |
HBA |
198.5 |
216.0 |
| CB |
CD |
CD1 |
CD2 |
177.9 |
179.7 |
| CD1 |
CD |
CD2 |
CE2 |
358.9 |
359.7 |
| CD1 |
CD |
CD2 |
CE4 |
179.1 |
179.7 |
| CD2 |
CD |
CB |
HB |
135.9 |
155.7 |
| CD2 |
CD |
CB |
HBA |
16.4 |
35.6 |
| CZ |
CE2 |
CD2 |
CD |
0.4 |
0.0 |
| CE2 |
CD2 |
CD |
CE4 |
179.8 |
180.0 |
| CD |
CD2 |
CE2 |
HE2 |
180.4 |
180.3 |
| CD |
CD2 |
CE4 |
HE4 |
89.9 |
84.2 |
| CD |
CD2 |
CE4 |
HE4A |
209.9 |
204.2 |
| CD |
CD2 |
CE4 |
HE4B |
329.9 |
324.2 |
| CE1 |
CZ |
OH |
HOH |
180.0 |
269.7 |
| CE1 |
CZ |
CE2 |
CD2 |
0.1 |
0.3 |
| CE1 |
CZ |
CE2 |
HE2 |
180.1 |
180.0 |
| CD |
CD2 |
CE2 |
CZ |
0.4 |
0.0 |
| CE2 |
CZ |
OH |
HOH |
359.6 |
90.0 |
| CZ |
CE2 |
CD2 |
CE4 |
180.2 |
180.0 |
| CD2 |
CE2 |
CZ |
HE2 |
180.0 |
180.3 |
| CE3 |
CD1 |
CE1 |
HE1 |
359.5 |
360.0 |
| CE1 |
CD1 |
CD |
CD2 |
1.2 |
0.3 |
| CD1 |
CE1 |
CZ |
CE2 |
0.0 |
359.7 |
| CD |
CD2 |
CE2 |
CE4 |
180.2 |
180.0 |
| CZ |
CE2 |
CD2 |
HE2 |
180.0 |
179.7 |
| CE2 |
CD2 |
CE4 |
HE4 |
270.1 |
264.2 |
| CE2 |
CD2 |
CE4 |
HE4A |
30.1 |
24.2 |
| CE2 |
CD2 |
CE4 |
HE4B |
150.1 |
144.2 |
| CD |
CD2 |
CE4 |
CE2 |
179.8 |
180.0 |
| CE4 |
CD2 |
CE2 |
HE2 |
0.2 |
0.3 |
| HE4 |
CE4 |
CD2 |
HE4A |
240.0 |
240.1 |
| HE4 |
CE4 |
CD2 |
HE4B |
120.0 |
120.0 |
| HE4A |
CE4 |
CD2 |
HE4B |
240.0 |
240.0 |
| HE1 |
CE1 |
CZ |
CE2 |
180.0 |
179.7 |
| CZ |
CE2 |
HE2 |
CD2 |
180.0 |
180.3 |
| HE2 |
CE2 |
CD2 |
CE4 |
0.2 |
0.3 |
| HE3A |
CE3 |
HE3 |
HE3B |
120.0 |
119.9 |
| HE3 |
CE3 |
HE3A |
HE3B |
240.0 |
240.1 |
| HE3 |
CE3 |
HE3B |
HE3A |
120.0 |
120.0 |
| CD2 |
CE4 |
HE4 |
HE4A |
120.0 |
120.0 |
| CD2 |
CE4 |
HE4 |
HE4B |
240.0 |
240.0 |
| HE4A |
CE4 |
HE4 |
HE4B |
120.0 |
120.0 |
| CD2 |
CE4 |
HE4A |
HE4 |
240.0 |
240.0 |
| CD2 |
CE4 |
HE4A |
HE4B |
120.0 |
120.0 |
| HE4 |
CE4 |
HE4A |
HE4B |
240.0 |
240.0 |
| CD2 |
CE4 |
HE4B |
HE4 |
120.0 |
120.0 |
| CD2 |
CE4 |
HE4B |
HE4A |
240.0 |
240.0 |
| HE4 |
CE4 |
HE4B |
HE4A |
120.0 |
120.0 |